Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|033590
Gene name
Locationscaffold_13:5642..6074
Strand+
Gene length (bp)432
Transcript length (bp)432
Coding sequence length (bp)432
Protein length (aa) 144

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 0.0 0.0 0.0
Initials Initials knots 0.0 0.0 0.0
Pileal_Stipeal_center Stage I stipe center 0.0 0.0 0.0
Pileal_Stipeal_shell Stage I stipe shell 0.0 0.0 0.0
DIF_stipe_center Stage II stipe center 0.0 0.0 0.0
DIF_stipe_shell Stage II stipe shell 0.0 0.0 0.0
DIF_stipe_skin Stage II stipe skin 0.0 0.0 0.0
DIF_cap_skin Stage II cap skin 0.0 0.0 0.0
DIF_cap_tissue Stage II cap tissue 0.0 0.0 0.0
DIF_gill_tissue Stage II gill tissue 0.0 0.0 0.0
YFB_stipe_center Young fruiting body stipe center 0.0 0.0 0.0
YFB_stipe_shell Young fruiting body stipe shell 0.0 0.0 0.0
YFB_stipe_skin Young fruiting body stipe skin 0.0 0.0 0.0
YFB_cap_skin Young fruiting body cap skin 0.0 0.0 0.0
YFB_cap_tissue Young fruiting body cap tissue 0.0 0.0 0.0
YFB_gill_tissue Young fruiting body gill tissue 0.0 0.0 0.0
YFB_veil Young fruiting body veil 0.0 0.0 0.0

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 1.0 no
Casing YFB_stipe_center 1.0 no
Casing YFB_stipe_shell 1.0 no
Casing YFB_stipe_skin 1.0 no
Casing YFB_cap_skin 1.0 no
Casing YFB_cap_tissue 1.0 no
Casing YFB_gill_tissue 1.0 no
Casing YFB_veil 1.0 no
Casing Initials 1.0 no
Casing Pileal_Stipeal_center 1.0 no
Casing Pileal_Stipeal_shell 1.0 no
Casing DIF_stipe_center 1.0 no
Casing DIF_stipe_shell 1.0 no
Casing DIF_stipe_skin 1.0 no
Casing DIF_cap_skin 1.0 no
Casing DIF_cap_tissue 1.0 no
DIF_gill_tissue YFB_stipe_center 1.0 no
DIF_gill_tissue YFB_stipe_shell 1.0 no
DIF_gill_tissue YFB_stipe_skin 1.0 no
DIF_gill_tissue YFB_cap_skin 1.0 no
DIF_gill_tissue YFB_cap_tissue 1.0 no
DIF_gill_tissue YFB_gill_tissue 1.0 no
DIF_gill_tissue YFB_veil 1.0 no
YFB_stipe_center YFB_stipe_shell 1.0 no
YFB_stipe_center YFB_stipe_skin 1.0 no
YFB_stipe_center YFB_cap_skin 1.0 no
YFB_stipe_center YFB_cap_tissue 1.0 no
YFB_stipe_center YFB_gill_tissue 1.0 no
YFB_stipe_center YFB_veil 1.0 no
YFB_stipe_shell YFB_stipe_skin 1.0 no
YFB_stipe_shell YFB_cap_skin 1.0 no
YFB_stipe_shell YFB_cap_tissue 1.0 no
YFB_stipe_shell YFB_gill_tissue 1.0 no
YFB_stipe_shell YFB_veil 1.0 no
YFB_stipe_skin YFB_cap_skin 1.0 no
YFB_stipe_skin YFB_cap_tissue 1.0 no
YFB_stipe_skin YFB_gill_tissue 1.0 no
YFB_stipe_skin YFB_veil 1.0 no
YFB_cap_skin YFB_cap_tissue 1.0 no
YFB_cap_skin YFB_gill_tissue 1.0 no
YFB_cap_skin YFB_veil 1.0 no
YFB_cap_tissue YFB_gill_tissue 1.0 no
YFB_cap_tissue YFB_veil 1.0 no
YFB_gill_tissue YFB_veil 1.0 no
Initials DIF_gill_tissue 1.0 no
Initials YFB_stipe_center 1.0 no
Initials YFB_stipe_shell 1.0 no
Initials YFB_stipe_skin 1.0 no
Initials YFB_cap_skin 1.0 no
Initials YFB_cap_tissue 1.0 no
Initials YFB_gill_tissue 1.0 no
Initials YFB_veil 1.0 no
Initials Pileal_Stipeal_center 1.0 no
Initials Pileal_Stipeal_shell 1.0 no
Initials DIF_stipe_center 1.0 no
Initials DIF_stipe_shell 1.0 no
Initials DIF_stipe_skin 1.0 no
Initials DIF_cap_skin 1.0 no
Initials DIF_cap_tissue 1.0 no
Pileal_Stipeal_center DIF_gill_tissue 1.0 no
Pileal_Stipeal_center YFB_stipe_center 1.0 no
Pileal_Stipeal_center YFB_stipe_shell 1.0 no
Pileal_Stipeal_center YFB_stipe_skin 1.0 no
Pileal_Stipeal_center YFB_cap_skin 1.0 no
Pileal_Stipeal_center YFB_cap_tissue 1.0 no
Pileal_Stipeal_center YFB_gill_tissue 1.0 no
Pileal_Stipeal_center YFB_veil 1.0 no
Pileal_Stipeal_center Pileal_Stipeal_shell 1.0 no
Pileal_Stipeal_center DIF_stipe_center 1.0 no
Pileal_Stipeal_center DIF_stipe_shell 1.0 no
Pileal_Stipeal_center DIF_stipe_skin 1.0 no
Pileal_Stipeal_center DIF_cap_skin 1.0 no
Pileal_Stipeal_center DIF_cap_tissue 1.0 no
Pileal_Stipeal_shell DIF_gill_tissue 1.0 no
Pileal_Stipeal_shell YFB_stipe_center 1.0 no
Pileal_Stipeal_shell YFB_stipe_shell 1.0 no
Pileal_Stipeal_shell YFB_stipe_skin 1.0 no
Pileal_Stipeal_shell YFB_cap_skin 1.0 no
Pileal_Stipeal_shell YFB_cap_tissue 1.0 no
Pileal_Stipeal_shell YFB_gill_tissue 1.0 no
Pileal_Stipeal_shell YFB_veil 1.0 no
Pileal_Stipeal_shell DIF_stipe_center 1.0 no
Pileal_Stipeal_shell DIF_stipe_shell 1.0 no
Pileal_Stipeal_shell DIF_stipe_skin 1.0 no
Pileal_Stipeal_shell DIF_cap_skin 1.0 no
Pileal_Stipeal_shell DIF_cap_tissue 1.0 no
DIF_stipe_center DIF_gill_tissue 1.0 no
DIF_stipe_center YFB_stipe_center 1.0 no
DIF_stipe_center YFB_stipe_shell 1.0 no
DIF_stipe_center YFB_stipe_skin 1.0 no
DIF_stipe_center YFB_cap_skin 1.0 no
DIF_stipe_center YFB_cap_tissue 1.0 no
DIF_stipe_center YFB_gill_tissue 1.0 no
DIF_stipe_center YFB_veil 1.0 no
DIF_stipe_center DIF_stipe_shell 1.0 no
DIF_stipe_center DIF_stipe_skin 1.0 no
DIF_stipe_center DIF_cap_skin 1.0 no
DIF_stipe_center DIF_cap_tissue 1.0 no
DIF_stipe_shell DIF_gill_tissue 1.0 no
DIF_stipe_shell YFB_stipe_center 1.0 no
DIF_stipe_shell YFB_stipe_shell 1.0 no
DIF_stipe_shell YFB_stipe_skin 1.0 no
DIF_stipe_shell YFB_cap_skin 1.0 no
DIF_stipe_shell YFB_cap_tissue 1.0 no
DIF_stipe_shell YFB_gill_tissue 1.0 no
DIF_stipe_shell YFB_veil 1.0 no
DIF_stipe_shell DIF_stipe_skin 1.0 no
DIF_stipe_shell DIF_cap_skin 1.0 no
DIF_stipe_shell DIF_cap_tissue 1.0 no
DIF_stipe_skin DIF_gill_tissue 1.0 no
DIF_stipe_skin YFB_stipe_center 1.0 no
DIF_stipe_skin YFB_stipe_shell 1.0 no
DIF_stipe_skin YFB_stipe_skin 1.0 no
DIF_stipe_skin YFB_cap_skin 1.0 no
DIF_stipe_skin YFB_cap_tissue 1.0 no
DIF_stipe_skin YFB_gill_tissue 1.0 no
DIF_stipe_skin YFB_veil 1.0 no
DIF_stipe_skin DIF_cap_skin 1.0 no
DIF_stipe_skin DIF_cap_tissue 1.0 no
DIF_cap_skin DIF_gill_tissue 1.0 no
DIF_cap_skin YFB_stipe_center 1.0 no
DIF_cap_skin YFB_stipe_shell 1.0 no
DIF_cap_skin YFB_stipe_skin 1.0 no
DIF_cap_skin YFB_cap_skin 1.0 no
DIF_cap_skin YFB_cap_tissue 1.0 no
DIF_cap_skin YFB_gill_tissue 1.0 no
DIF_cap_skin YFB_veil 1.0 no
DIF_cap_skin DIF_cap_tissue 1.0 no
DIF_cap_tissue DIF_gill_tissue 1.0 no
DIF_cap_tissue YFB_stipe_center 1.0 no
DIF_cap_tissue YFB_stipe_shell 1.0 no
DIF_cap_tissue YFB_stipe_skin 1.0 no
DIF_cap_tissue YFB_cap_skin 1.0 no
DIF_cap_tissue YFB_cap_tissue 1.0 no
DIF_cap_tissue YFB_gill_tissue 1.0 no
DIF_cap_tissue YFB_veil 1.0 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|033590
MRPKMSLLLALSSLDYSPAFLAEVHSDYLDKGLSGHFLRLDKLGLLDRRFIVSKKRTKQLIDLTAMWRRTVLERR
DHQATEVPAPTLSRGTAAPSTQTELRTSIVAKVAAAPQPVRRRPPVRTGPLDAWLIHRDAPPGEDNDV*
Coding >AgabiH97|033590
ATGCGCCCGAAGATGTCTCTACTCCTGGCGTTGAGTAGTCTGGATTATTCCCCGGCCTTTTTGGCTGAGGTACAT
TCGGATTATCTTGACAAAGGGTTGTCAGGGCATTTTCTGCGGCTCGACAAACTCGGCCTTCTAGATCGCCGCTTT
ATTGTGTCTAAAAAACGCACGAAGCAATTGATCGACCTTACCGCCATGTGGCGTCGGACCGTTCTGGAGCGCCGT
GATCACCAAGCAACAGAAGTGCCTGCTCCGACACTTAGTCGTGGTACGGCGGCGCCTTCAACGCAGACGGAGCTT
CGTACTTCGATTGTCGCGAAGGTTGCTGCTGCGCCGCAACCAGTTAGGAGACGGCCGCCTGTACGTACAGGTCCG
CTTGACGCGTGGTTAATTCATCGGGATGCGCCTCCGGGTGAGGACAACGACGTTTGA
Transcript >AgabiH97|033590
ATGCGCCCGAAGATGTCTCTACTCCTGGCGTTGAGTAGTCTGGATTATTCCCCGGCCTTTTTGGCTGAGGTACAT
TCGGATTATCTTGACAAAGGGTTGTCAGGGCATTTTCTGCGGCTCGACAAACTCGGCCTTCTAGATCGCCGCTTT
ATTGTGTCTAAAAAACGCACGAAGCAATTGATCGACCTTACCGCCATGTGGCGTCGGACCGTTCTGGAGCGCCGT
GATCACCAAGCAACAGAAGTGCCTGCTCCGACACTTAGTCGTGGTACGGCGGCGCCTTCAACGCAGACGGAGCTT
CGTACTTCGATTGTCGCGAAGGTTGCTGCTGCGCCGCAACCAGTTAGGAGACGGCCGCCTGTACGTACAGGTCCG
CTTGACGCGTGGTTAATTCATCGGGATGCGCCTCCGGGTGAGGACAACGACGTTTGA
Gene >AgabiH97|033590
ATGCGCCCGAAGATGTCTCTACTCCTGGCGTTGAGTAGTCTGGATTATTCCCCGGCCTTTTTGGCTGAGGTACAT
TCGGATTATCTTGACAAAGGGTTGTCAGGGCATTTTCTGCGGCTCGACAAACTCGGCCTTCTAGATCGCCGCTTT
ATTGTGTCTAAAAAACGCACGAAGCAATTGATCGACCTTACCGCCATGTGGCGTCGGACCGTTCTGGAGCGCCGT
GATCACCAAGCAACAGAAGTGCCTGCTCCGACACTTAGTCGTGGTACGGCGGCGCCTTCAACGCAGACGGAGCTT
CGTACTTCGATTGTCGCGAAGGTTGCTGCTGCGCCGCAACCAGTTAGGAGACGGCCGCCTGTACGTACAGGTCCG
CTTGACGCGTGGTTAATTCATCGGGATGCGCCTCCGGGTGAGGACAACGACGTTTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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