Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|033530
Gene name
Locationscaffold_12:1471529..1472424
Strand-
Gene length (bp)895
Transcript length (bp)633
Coding sequence length (bp)633
Protein length (aa) 211

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05008 V-SNARE Vesicle transport v-SNARE protein N-terminus 4.4E-21 16 94
PF12352 V-SNARE_C Snare region anchored in the vesicle membrane C-terminus 4.2E-13 142 199

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P78768|VTI1_SCHPO Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2 9 205 3.0E-27
sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1 6 205 8.0E-22
sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1 9 205 3.0E-21
sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=2 9 205 4.0E-21
sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1 9 205 8.0E-21
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Swissprot ID Swissprot Description Start End E-value
sp|P78768|VTI1_SCHPO Vesicle transport v-SNARE protein vti1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vti1 PE=2 SV=2 9 205 3.0E-27
sp|Q9LVP9|VTI13_ARATH Vesicle transport v-SNARE 13 OS=Arabidopsis thaliana GN=VTI13 PE=2 SV=1 6 205 8.0E-22
sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A OS=Mus musculus GN=Vti1a PE=1 SV=1 9 205 3.0E-21
sp|Q96AJ9|VTI1A_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1A OS=Homo sapiens GN=VTI1A PE=1 SV=2 9 205 4.0E-21
sp|Q9JI51|VTI1A_RAT Vesicle transport through interaction with t-SNAREs homolog 1A OS=Rattus norvegicus GN=Vti1a PE=1 SV=1 9 205 8.0E-21
sp|Q9SEL6|VTI11_ARATH Vesicle transport v-SNARE 11 OS=Arabidopsis thaliana GN=VTI11 PE=1 SV=2 8 205 1.0E-19
sp|Q04338|VTI1_YEAST t-SNARE VTI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTI1 PE=1 SV=3 12 203 7.0E-17
sp|Q54CK6|VTI1A_DICDI Vesicle transport through interaction with t-SNAREs homolog 1A OS=Dictyostelium discoideum GN=vti1A PE=1 SV=1 8 198 2.0E-16
sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12 OS=Arabidopsis thaliana GN=VTI12 PE=1 SV=3 8 205 8.0E-16
sp|Q9UEU0|VTI1B_HUMAN Vesicle transport through interaction with t-SNAREs homolog 1B OS=Homo sapiens GN=VTI1B PE=1 SV=3 37 201 3.0E-07
sp|P58200|VTI1B_RAT Vesicle transport through interaction with t-SNAREs homolog 1B OS=Rattus norvegicus GN=Vti1b PE=1 SV=2 9 201 4.0E-07
sp|O88384|VTI1B_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1B OS=Mus musculus GN=Vti1b PE=1 SV=1 9 201 7.0E-07
sp|Q2KIU0|VTI1B_BOVIN Vesicle transport through interaction with t-SNAREs homolog 1B OS=Bos taurus GN=VTI1B PE=2 SV=1 37 201 7.0E-07
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GO

GO Term Description Terminal node
GO:0006886 intracellular protein transport Yes
GO:0016020 membrane Yes
GO:0015031 protein transport No
GO:0051179 localization No
GO:0110165 cellular anatomical entity No
GO:0071705 nitrogen compound transport No
GO:0051234 establishment of localization No
GO:0005575 cellular_component No
GO:0070727 cellular macromolecule localization No
GO:0008150 biological_process No
GO:0045184 establishment of protein localization No
GO:0051641 cellular localization No
GO:0006810 transport No
GO:0008104 protein localization No
GO:0071702 organic substance transport No
GO:0033036 macromolecule localization No
GO:0046907 intracellular transport No
GO:0009987 cellular process No
GO:0051649 establishment of localization in cell No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 12 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|033530
MEQPPTQLFELYEADFKVLLSNIKDKLDGNGKDLPGEQKKAALRKVEIALDEADDIISQLEIEIQGIPASIRSQY
TTRLRQAKTELTRYRKASKESHTQLARFDLLGGSKTRAGLPTSDDPYGEGSDRTRLLAGTNTLDDGTRRLTDSTR
IALETETQGADILRGLRGQREQIENARDTLHGADISIDRSSSRIQTMIRQANKQRADSVF*
Coding >AgabiH97|033530
ATGGAGCAGCCGCCCACCCAATTGTTCGAGTTGTACGAGGCAGATTTCAAAGTTCTTCTGTCGAATATCAAGGAC
AAGTTGGACGGCAATGGCAAAGACTTGCCCGGAGAACAGAAGAAAGCTGCTTTGAGGAAGGTTGAGATCGCGCTG
GATGAAGCAGATGATATCATATCCCAGCTCGAAATCGAGATTCAAGGCATACCTGCCTCAATCCGTAGCCAATAT
ACCACAAGACTCCGACAGGCAAAGACAGAATTAACCCGATATAGGAAAGCCTCGAAGGAGTCACATACCCAGCTT
GCTCGTTTTGACCTCTTGGGTGGTTCAAAAACTCGCGCCGGCCTTCCTACTTCTGACGATCCATACGGTGAAGGG
AGTGACAGAACAAGGCTGCTCGCAGGAACAAACACGCTCGACGACGGGACTCGACGACTGACGGACTCGACAAGA
ATAGCGTTAGAGACAGAGACGCAGGGTGCGGACATACTACGAGGCCTTCGTGGCCAGAGAGAGCAAATTGAAAAT
GCTCGCGATACGCTGCATGGTGCGGACATAAGTATTGATAGGTCATCGTCAAGGATTCAAACAATGATTCGACAG
GCGAACAAGCAACGGGCTGATTCTGTATTTTAA
Transcript >AgabiH97|033530
ATGGAGCAGCCGCCCACCCAATTGTTCGAGTTGTACGAGGCAGATTTCAAAGTTCTTCTGTCGAATATCAAGGAC
AAGTTGGACGGCAATGGCAAAGACTTGCCCGGAGAACAGAAGAAAGCTGCTTTGAGGAAGGTTGAGATCGCGCTG
GATGAAGCAGATGATATCATATCCCAGCTCGAAATCGAGATTCAAGGCATACCTGCCTCAATCCGTAGCCAATAT
ACCACAAGACTCCGACAGGCAAAGACAGAATTAACCCGATATAGGAAAGCCTCGAAGGAGTCACATACCCAGCTT
GCTCGTTTTGACCTCTTGGGTGGTTCAAAAACTCGCGCCGGCCTTCCTACTTCTGACGATCCATACGGTGAAGGG
AGTGACAGAACAAGGCTGCTCGCAGGAACAAACACGCTCGACGACGGGACTCGACGACTGACGGACTCGACAAGA
ATAGCGTTAGAGACAGAGACGCAGGGTGCGGACATACTACGAGGCCTTCGTGGCCAGAGAGAGCAAATTGAAAAT
GCTCGCGATACGCTGCATGGTGCGGACATAAGTATTGATAGGTCATCGTCAAGGATTCAAACAATGATTCGACAG
GCGAACAAGCAACGGGCTGATTCTGTATTTTAA
Gene >AgabiH97|033530
ATGGAGCAGCCGCCCACCCAATTGTTCGAGTTGTACGAGGCAGATTTCAAAGTTCTTCTGTCGAATATCAAGGAC
AAGTTGGACGGCAATGGCAAAGACTTGCCCGGAGGTATGTTCACCCCAGCCACTGTCACGGTGCCGAGTCTCATA
TCTACCCACCACAAGAACAGAAGAAAGCTGCTTTGAGGAAGGTTGAGATCGCGCTGGATGAAGCAGATGATATCG
TGCGTACATTTCCCTTTCCTCGTCCTCAAGCTAGTTCATATTTGTGCAGATATCCCAGCTCGAAATCGAGATTCA
AGGCATACCTGCCTCAATCCGTAGCCAATATACCACAAGACTCCGACAGGCAAAGACAGAATTAACCCGATATAG
GAAAGCCTCGAAGGAGTCACATACCCAGCTTGCTCGTTTTGACCTCTTGGGTGGTTCAAAAACTCGCGCCGGCCT
TCCTACTTCTGACGATCCATACGGTGAAGGGAGTGACAGAACAAGGCTGCTCGCAGGAACAAACACGCTCGACGA
CGGGACTCGACGACTGACGGACTCGACAAGAATAGCGTTAGAGACAGAGACGCAGGGTGCGGACATACTACGAGG
CCTTCGTGGCCAGAGAGAGCAAATTGAAAATGCTCGCGATACGGTAAGCCACTCGGGTTAATTGCATGTTGCCAC
TGAGACTCATTCACAAAAACAGCTGCATGGTGCGGACATAAGTATTGATAGGTCATCGTCAAGGATTCAAACAAT
GATTCGACAGTAAGGGGCACTACTCCTATTGACGTATCAACTTTTTTTCTGATGACCTCGGAAATAGGGCGAACA
AGCAACGGTATATATATATACTAATCGGGTTGTTTTTTGCTGTGCTTGTAGGGCTGATTCTGTATTTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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