© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|031940 |
| Gene name | |
| Location | scaffold_12:1031407..1033793 |
| Strand | - |
| Gene length (bp) | 2386 |
| Transcript length (bp) | 1746 |
| Coding sequence length (bp) | 1746 |
| Protein length (aa) | 582 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07992 | Pyr_redox_2 | Pyridine nucleotide-disulphide oxidoreductase | 1.7E-52 | 111 | 442 |
| PF00070 | Pyr_redox | Pyridine nucleotide-disulphide oxidoreductase | 8.3E-09 | 275 | 358 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14121|NDH1_SCHPO | Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A11.07 PE=3 SV=1 | 46 | 570 | 1.0E-164 |
| sp|F2Z699|NDH2_YARLI | External alternative NADH-ubiquinone oxidoreductase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NDH2 PE=1 SV=1 | 62 | 572 | 1.0E-162 |
| sp|P40215|NDH1_YEAST | External NADH-ubiquinone oxidoreductase 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE1 PE=1 SV=1 | 63 | 568 | 3.0E-134 |
| sp|O43090|NDH2_SCHPO | Probable NADH-ubiquinone oxidoreductase C947.15c, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC947.15c PE=3 SV=1 | 59 | 571 | 2.0E-133 |
| sp|Q07500|NDH2_YEAST | External NADH-ubiquinone oxidoreductase 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE2 PE=1 SV=1 | 76 | 568 | 8.0E-124 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|O14121|NDH1_SCHPO | Probable NADH-ubiquinone oxidoreductase C3A11.07, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3A11.07 PE=3 SV=1 | 46 | 570 | 1.0E-164 |
| sp|F2Z699|NDH2_YARLI | External alternative NADH-ubiquinone oxidoreductase, mitochondrial OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NDH2 PE=1 SV=1 | 62 | 572 | 1.0E-162 |
| sp|P40215|NDH1_YEAST | External NADH-ubiquinone oxidoreductase 1, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE1 PE=1 SV=1 | 63 | 568 | 3.0E-134 |
| sp|O43090|NDH2_SCHPO | Probable NADH-ubiquinone oxidoreductase C947.15c, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC947.15c PE=3 SV=1 | 59 | 571 | 2.0E-133 |
| sp|Q07500|NDH2_YEAST | External NADH-ubiquinone oxidoreductase 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDE2 PE=1 SV=1 | 76 | 568 | 8.0E-124 |
| sp|P32340|NDI1_YEAST | Rotenone-insensitive NADH-ubiquinone oxidoreductase, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NDI1 PE=1 SV=1 | 104 | 568 | 8.0E-100 |
| sp|Q94BV7|NDB2_ARATH | External alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial OS=Arabidopsis thaliana GN=NDB2 PE=1 SV=1 | 79 | 568 | 7.0E-83 |
| sp|Q55CD9|NDH_DICDI | Probable NADH dehydrogenase OS=Dictyostelium discoideum GN=DDB_G0270104 PE=3 SV=2 | 108 | 570 | 2.0E-80 |
| sp|Q9ST62|NDB1_SOLTU | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Solanum tuberosum GN=NDB1 PE=1 SV=1 | 109 | 428 | 3.0E-76 |
| sp|M1BYJ7|ENDB1_SOLTU | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Solanum tuberosum GN=NDB1 PE=3 SV=1 | 109 | 428 | 3.0E-75 |
| sp|Q9SKT7|NDB4_ARATH | External alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial OS=Arabidopsis thaliana GN=NDB4 PE=1 SV=1 | 76 | 568 | 1.0E-73 |
| sp|Q1JPL4|NDB1_ARATH | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Arabidopsis thaliana GN=NDB1 PE=1 SV=1 | 112 | 430 | 4.0E-73 |
| sp|F4JJJ3|NDB3_ARATH | External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial OS=Arabidopsis thaliana GN=NDB3 PE=2 SV=1 | 74 | 428 | 2.0E-72 |
| sp|O80874|NDA2_ARATH | Internal alternative NAD(P)H-ubiquinone oxidoreductase A2, mitochondrial OS=Arabidopsis thaliana GN=NDA2 PE=2 SV=1 | 108 | 571 | 7.0E-64 |
| sp|Q8GWA1|NDA1_ARATH | Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial OS=Arabidopsis thaliana GN=NDA1 PE=2 SV=1 | 108 | 571 | 1.0E-63 |
| sp|Q9ST63|NDA1_SOLTU | Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial OS=Solanum tuberosum GN=NDA1 PE=1 SV=1 | 51 | 571 | 9.0E-60 |
| sp|M0ZYF3|INDA1_SOLTU | Internal alternative NAD(P)H-ubiquinone oxidoreductase A1, mitochondrial OS=Solanum tuberosum GN=NDA1 PE=3 SV=1 | 51 | 571 | 2.0E-59 |
| sp|O05267|YUMB_BACSU | NADH dehydrogenase-like protein YumB OS=Bacillus subtilis (strain 168) GN=yumB PE=3 SV=1 | 108 | 459 | 6.0E-33 |
| sp|Q4L4V6|Y2010_STAHJ | NADH dehydrogenase-like protein SH2010 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH2010 PE=3 SV=1 | 108 | 452 | 2.0E-31 |
| sp|Q2YWP9|Y807_STAAB | NADH dehydrogenase-like protein SAB0807 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB0807 PE=3 SV=1 | 108 | 452 | 6.0E-31 |
| sp|Q5HHE4|Y944_STAAC | NADH dehydrogenase-like protein SACOL0944 OS=Staphylococcus aureus (strain COL) GN=SACOL0944 PE=3 SV=1 | 108 | 452 | 8.0E-31 |
| sp|Q99VE0|Y941_STAAM | NADH dehydrogenase-like protein SAV0941 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV0941 PE=3 SV=1 | 108 | 452 | 8.0E-31 |
| sp|Q6GIE7|Y903_STAAR | NADH dehydrogenase-like protein SAR0903 OS=Staphylococcus aureus (strain MRSA252) GN=SAR0903 PE=3 SV=1 | 108 | 452 | 8.0E-31 |
| sp|Q2FZV7|Y878_STAA8 | NADH dehydrogenase-like protein SAOUHSC_00878 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00878 PE=1 SV=1 | 108 | 452 | 8.0E-31 |
| sp|Q2FID4|Y844_STAA3 | NADH dehydrogenase-like protein SAUSA300_0844 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0844 PE=3 SV=1 | 108 | 452 | 8.0E-31 |
| sp|Q7A6J4|Y802_STAAN | NADH dehydrogenase-like protein SA0802 OS=Staphylococcus aureus (strain N315) GN=SA0802 PE=1 SV=1 | 108 | 452 | 8.0E-31 |
| sp|Q8NXG0|Y823_STAAW | NADH dehydrogenase-like protein MW0823 OS=Staphylococcus aureus (strain MW2) GN=MW0823 PE=3 SV=1 | 108 | 452 | 9.0E-31 |
| sp|Q6GAY5|Y811_STAAS | NADH dehydrogenase-like protein SAS0811 OS=Staphylococcus aureus (strain MSSA476) GN=SAS0811 PE=3 SV=1 | 108 | 452 | 9.0E-31 |
| sp|Q49W80|Y1834_STAS1 | NADH dehydrogenase-like protein SSP1834 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1834 PE=3 SV=1 | 108 | 452 | 2.0E-29 |
| sp|P44856|DHNA_HAEIN | NADH dehydrogenase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ndh PE=3 SV=1 | 135 | 460 | 3.0E-29 |
| sp|P00393|DHNA_ECOLI | NADH dehydrogenase OS=Escherichia coli (strain K12) GN=ndh PE=1 SV=2 | 135 | 443 | 2.0E-27 |
| sp|Q8CPV5|Y635_STAES | NADH dehydrogenase-like protein SE_0635 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_0635 PE=3 SV=1 | 108 | 459 | 4.0E-26 |
| sp|Q5HQM1|Y527_STAEQ | NADH dehydrogenase-like protein SERP0527 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0527 PE=3 SV=1 | 108 | 459 | 9.0E-26 |
| sp|P80861|YJLD_BACSU | NADH dehydrogenase-like protein YjlD OS=Bacillus subtilis (strain 168) GN=yjlD PE=1 SV=3 | 110 | 460 | 2.0E-19 |
| sp|O32117|YUTJ_BACSU | NADH dehydrogenase-like protein YutJ OS=Bacillus subtilis (strain 168) GN=yutJ PE=3 SV=2 | 110 | 480 | 2.0E-16 |
| sp|Q9ST62|NDB1_SOLTU | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Solanum tuberosum GN=NDB1 PE=1 SV=1 | 385 | 571 | 2.0E-13 |
| sp|Q1JPL4|NDB1_ARATH | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Arabidopsis thaliana GN=NDB1 PE=1 SV=1 | 434 | 571 | 3.0E-13 |
| sp|M1BYJ7|ENDB1_SOLTU | External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial OS=Solanum tuberosum GN=NDB1 PE=3 SV=1 | 385 | 571 | 5.0E-13 |
| sp|F4JJJ3|NDB3_ARATH | External alternative NAD(P)H-ubiquinone oxidoreductase B3, mitochondrial OS=Arabidopsis thaliana GN=NDB3 PE=2 SV=1 | 386 | 571 | 1.0E-11 |
| sp|Q8GXR9|DHNA_ARATH | Alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NDC1 PE=1 SV=2 | 107 | 444 | 2.0E-08 |
| sp|Q54NS8|AIFB_DICDI | Apoptosis-inducing factor homolog B OS=Dictyostelium discoideum GN=aifB PE=3 SV=1 | 108 | 431 | 5.0E-07 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016491 | oxidoreductase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 72.08 | 39.71 | 104.45 |
| Initials | Initials knots | 39.71 | 23.62 | 55.79 |
| Pileal_Stipeal_center | Stage I stipe center | 60.49 | 35.98 | 85.00 |
| Pileal_Stipeal_shell | Stage I stipe shell | 68.48 | 40.81 | 96.14 |
| DIF_stipe_center | Stage II stipe center | 90.97 | 54.27 | 127.68 |
| DIF_stipe_shell | Stage II stipe shell | 73.05 | 43.51 | 102.59 |
| DIF_stipe_skin | Stage II stipe skin | 59.30 | 35.65 | 82.94 |
| DIF_cap_skin | Stage II cap skin | 88.98 | 52.86 | 125.10 |
| DIF_cap_tissue | Stage II cap tissue | 104.03 | 61.80 | 146.26 |
| DIF_gill_tissue | Stage II gill tissue | 85.07 | 50.70 | 119.45 |
| YFB_stipe_center | Young fruiting body stipe center | 90.47 | 53.94 | 127.00 |
| YFB_stipe_shell | Young fruiting body stipe shell | 83.91 | 50.05 | 117.76 |
| YFB_stipe_skin | Young fruiting body stipe skin | 50.47 | 30.24 | 70.70 |
| YFB_cap_skin | Young fruiting body cap skin | 68.46 | 41.13 | 95.80 |
| YFB_cap_tissue | Young fruiting body cap tissue | 98.92 | 58.77 | 139.07 |
| YFB_gill_tissue | Young fruiting body gill tissue | 51.30 | 30.49 | 72.11 |
| YFB_veil | Young fruiting body veil | 64.85 | 38.50 | 91.20 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.690614 | no |
| Casing | YFB_stipe_center | 0.545828 | no |
| Casing | YFB_stipe_shell | 0.721179 | no |
| Casing | YFB_stipe_skin | 0.251537 | no |
| Casing | YFB_cap_skin | 0.922853 | no |
| Casing | YFB_cap_tissue | 0.335694 | no |
| Casing | YFB_gill_tissue | 0.292527 | no |
| Casing | YFB_veil | 0.825748 | no |
| Casing | Initials | 0.029648 | yes |
| Casing | Pileal_Stipeal_center | 0.671630 | no |
| Casing | Pileal_Stipeal_shell | 0.924093 | no |
| Casing | DIF_stipe_center | 0.528583 | no |
| Casing | DIF_stipe_shell | 0.981358 | no |
| Casing | DIF_stipe_skin | 0.614815 | no |
| Casing | DIF_cap_skin | 0.583135 | no |
| Casing | DIF_cap_tissue | 0.239648 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.908625 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.979951 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.049046 | yes |
| DIF_gill_tissue | YFB_cap_skin | 0.546363 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.716816 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.065086 | no |
| DIF_gill_tissue | YFB_veil | 0.414788 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.878836 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.024444 | yes |
| YFB_stipe_center | YFB_cap_skin | 0.397993 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.852009 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.037364 | yes |
| YFB_stipe_center | YFB_veil | 0.278783 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.055583 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.583503 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.682261 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.078944 | no |
| YFB_stipe_shell | YFB_veil | 0.445642 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.333804 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.006387 | yes |
| YFB_stipe_skin | YFB_gill_tissue | 0.975228 | no |
| YFB_stipe_skin | YFB_veil | 0.456993 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.207043 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.370264 | no |
| YFB_cap_skin | YFB_veil | 0.913996 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.008457 | yes |
| YFB_cap_tissue | YFB_veil | 0.137029 | no |
| YFB_gill_tissue | YFB_veil | 0.510459 | no |
| Initials | DIF_gill_tissue | 0.002525 | yes |
| Initials | YFB_stipe_center | 0.001140 | yes |
| Initials | YFB_stipe_shell | 0.002951 | yes |
| Initials | YFB_stipe_skin | 0.493298 | no |
| Initials | YFB_cap_skin | 0.041824 | yes |
| Initials | YFB_cap_tissue | 0.000613 | yes |
| Initials | YFB_gill_tissue | 0.456127 | no |
| Initials | YFB_veil | 0.074661 | no |
| Initials | Pileal_Stipeal_center | 0.138696 | no |
| Initials | Pileal_Stipeal_shell | 0.043772 | yes |
| Initials | DIF_stipe_center | 0.000613 | yes |
| Initials | DIF_stipe_shell | 0.022631 | yes |
| Initials | DIF_stipe_skin | 0.162227 | no |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.275344 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.171265 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.298984 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.638541 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.778073 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.071598 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.684211 | no |
| Pileal_Stipeal_center | YFB_veil | 0.889219 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.778838 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.159049 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.627372 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.970398 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.194842 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.043339 | yes |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.551575 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.400686 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.582696 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.331689 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.999543 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.216986 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.378802 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.915511 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.387125 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.901940 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.727419 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.441504 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.145389 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.895852 | no |
| DIF_stipe_center | YFB_stipe_center | 0.991745 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.867833 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.027205 | yes |
| DIF_stipe_center | YFB_cap_skin | 0.388722 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.862312 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.038942 | yes |
| DIF_stipe_center | YFB_veil | 0.274557 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.552015 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.134148 | no |
| DIF_stipe_center | DIF_cap_skin | 0.968363 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.757368 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.713951 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.562521 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.746292 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.211358 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.898761 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.342199 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.252194 | no |
| DIF_stipe_shell | YFB_veil | 0.793543 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.567100 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.603201 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.244911 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.226152 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.136458 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.243731 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.680490 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.724866 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.055182 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.725231 | no |
| DIF_stipe_skin | YFB_veil | 0.849399 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.156253 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.028193 | yes |
| DIF_cap_skin | DIF_gill_tissue | 0.933207 | no |
| DIF_cap_skin | YFB_stipe_center | 0.976055 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.908862 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.027451 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.434863 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.816016 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.042475 | yes |
| DIF_cap_skin | YFB_veil | 0.309002 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.698948 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.592767 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.748495 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.555615 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.002525 | yes |
| DIF_cap_tissue | YFB_cap_skin | 0.135591 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.924874 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.006387 | yes |
| DIF_cap_tissue | YFB_veil | 0.083501 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|031940 MLFPRSQVIILGRTLAQSRPWQSSNVPLRQIGRQDFLGGSSFLRRRLATESSSASVSPPPPPRQSRWQGFLQFVG KATLITTIGGVGALYYITQREKNPGPQLPFDPDKKTLVILGSGWGATSLLKNLDTADFNVVVVSPRNFFLFTPLL PSVAVGTLNNRSIIQSIRYITRHKARNVSVIEAEATDVDPVNKLIKFADNSEVRGSVSSTAIPYDYLVYAVGAET QTFNIPGVKEHACFMKELNDAERFQNEFIDCLETAGFPGQDPQEIERLLHMIVVGGGPTGVELSGELHDFLEDDL KSWYPELAGKVRITLVEALPSVLPTFSKQLIDYTQSTFKESKIEVLTKTMVKEIKERSVILQMPDKSIQEVPCGL VVWAGGNKGRKVTQDLMAKFPEVQTNRRGIVVDDFLRMTGAEDSIFAIGDCTSTAYAPTAQVASQQGSYLARHLH QMAKHDELQTKLSRLEALAATVVGEEEKKATLRDVEMTKKQLAKIKYRPFDYSHQGSLAYIGSEKAVADLPFMNG NVATGGVATYMFWRSAYLSTLFSLRNRTLVATDWIKVKLFGRDVAREQTERPIISP* |
| Coding | >AgabiH97|031940 ATGCTGTTCCCTCGCAGCCAGGTGATTATTCTCGGACGAACATTGGCACAGTCCAGGCCATGGCAATCATCGAAC GTGCCCCTAAGGCAAATTGGACGCCAAGATTTTTTGGGCGGGTCTTCGTTCCTCCGGCGCCGGTTGGCCACGGAA TCAAGTAGTGCTTCCGTTTCGCCACCACCTCCCCCTCGCCAGTCAAGATGGCAAGGATTTCTTCAATTTGTAGGA AAGGCAACTCTTATCACGACAATTGGTGGTGTTGGAGCCTTGTACTATATCACTCAGCGTGAAAAAAATCCCGGG CCTCAATTGCCCTTTGACCCAGATAAAAAAACCCTCGTCATCCTCGGTAGTGGCTGGGGAGCCACCAGTCTACTA AAAAATTTGGACACTGCCGACTTTAATGTTGTGGTTGTTAGCCCGAGAAACTTTTTCCTGTTCACGCCACTCCTG CCCAGCGTTGCAGTGGGTACTCTGAATAACCGGTCTATTATACAGTCTATCCGGTACATCACGCGCCACAAGGCG CGTAATGTCTCCGTCATCGAAGCAGAGGCCACAGACGTTGATCCTGTCAACAAACTTATCAAGTTCGCCGATAAC TCGGAGGTCAGAGGTTCTGTCTCATCGACGGCGATTCCATATGATTACCTTGTGTATGCGGTTGGCGCCGAAACT CAAACTTTCAATATTCCCGGGGTCAAGGAGCATGCTTGTTTTATGAAGGAGCTGAATGATGCTGAACGTTTCCAA AATGAATTCATTGACTGTTTAGAAACCGCTGGATTCCCTGGACAAGATCCTCAGGAAATTGAGCGCTTGCTTCAC ATGATCGTTGTAGGCGGTGGTCCGACTGGTGTTGAACTAAGTGGTGAACTTCACGACTTCTTGGAAGACGATTTG AAGTCATGGTACCCTGAACTCGCTGGAAAAGTTCGCATCACCCTTGTGGAGGCTTTACCGAGTGTACTCCCCACA TTCAGTAAACAGCTCATTGATTACACGCAATCGACGTTCAAAGAGAGTAAAATTGAGGTTCTCACCAAGACTATG GTGAAGGAAATAAAGGAGAGGAGCGTTATACTCCAGATGCCTGATAAATCTATCCAGGAGGTGCCTTGTGGACTC GTGGTTTGGGCCGGCGGCAATAAAGGCCGTAAAGTCACACAGGACCTTATGGCTAAATTCCCAGAAGTGCAAACG AACCGCCGCGGTATCGTCGTAGACGATTTCCTCCGCATGACAGGTGCTGAAGATAGCATTTTCGCCATTGGTGAC TGCACCTCGACCGCATATGCACCCACTGCGCAAGTCGCTTCGCAACAGGGCTCTTATCTCGCCCGCCATCTCCAT CAAATGGCTAAACATGACGAGCTGCAAACGAAACTTTCTAGACTAGAAGCGCTAGCAGCTACAGTTGTTGGTGAA GAAGAAAAGAAAGCTACATTGCGTGACGTGGAGATGACGAAGAAACAATTGGCGAAGATCAAATACAGGCCATTT GACTATTCACATCAAGGATCGTTGGCGTATATTGGAAGTGAGAAGGCTGTAGCTGATTTGCCTTTTATGAATGGA AATGTCGCAACGGGCGGTGTGGCTACGTACATGTTCTGGCGTAGCGCTTACCTGAGCACGCTGTTCTCTCTTCGG AATCGTACTCTCGTCGCTACTGATTGGATAAAGGTCAAACTCTTTGGCCGTGATGTCGCTCGTGAACAAACTGAA AGGCCAATTATTTCACCATAA |
| Transcript | >AgabiH97|031940 ATGCTGTTCCCTCGCAGCCAGGTGATTATTCTCGGACGAACATTGGCACAGTCCAGGCCATGGCAATCATCGAAC GTGCCCCTAAGGCAAATTGGACGCCAAGATTTTTTGGGCGGGTCTTCGTTCCTCCGGCGCCGGTTGGCCACGGAA TCAAGTAGTGCTTCCGTTTCGCCACCACCTCCCCCTCGCCAGTCAAGATGGCAAGGATTTCTTCAATTTGTAGGA AAGGCAACTCTTATCACGACAATTGGTGGTGTTGGAGCCTTGTACTATATCACTCAGCGTGAAAAAAATCCCGGG CCTCAATTGCCCTTTGACCCAGATAAAAAAACCCTCGTCATCCTCGGTAGTGGCTGGGGAGCCACCAGTCTACTA AAAAATTTGGACACTGCCGACTTTAATGTTGTGGTTGTTAGCCCGAGAAACTTTTTCCTGTTCACGCCACTCCTG CCCAGCGTTGCAGTGGGTACTCTGAATAACCGGTCTATTATACAGTCTATCCGGTACATCACGCGCCACAAGGCG CGTAATGTCTCCGTCATCGAAGCAGAGGCCACAGACGTTGATCCTGTCAACAAACTTATCAAGTTCGCCGATAAC TCGGAGGTCAGAGGTTCTGTCTCATCGACGGCGATTCCATATGATTACCTTGTGTATGCGGTTGGCGCCGAAACT CAAACTTTCAATATTCCCGGGGTCAAGGAGCATGCTTGTTTTATGAAGGAGCTGAATGATGCTGAACGTTTCCAA AATGAATTCATTGACTGTTTAGAAACCGCTGGATTCCCTGGACAAGATCCTCAGGAAATTGAGCGCTTGCTTCAC ATGATCGTTGTAGGCGGTGGTCCGACTGGTGTTGAACTAAGTGGTGAACTTCACGACTTCTTGGAAGACGATTTG AAGTCATGGTACCCTGAACTCGCTGGAAAAGTTCGCATCACCCTTGTGGAGGCTTTACCGAGTGTACTCCCCACA TTCAGTAAACAGCTCATTGATTACACGCAATCGACGTTCAAAGAGAGTAAAATTGAGGTTCTCACCAAGACTATG GTGAAGGAAATAAAGGAGAGGAGCGTTATACTCCAGATGCCTGATAAATCTATCCAGGAGGTGCCTTGTGGACTC GTGGTTTGGGCCGGCGGCAATAAAGGCCGTAAAGTCACACAGGACCTTATGGCTAAATTCCCAGAAGTGCAAACG AACCGCCGCGGTATCGTCGTAGACGATTTCCTCCGCATGACAGGTGCTGAAGATAGCATTTTCGCCATTGGTGAC TGCACCTCGACCGCATATGCACCCACTGCGCAAGTCGCTTCGCAACAGGGCTCTTATCTCGCCCGCCATCTCCAT CAAATGGCTAAACATGACGAGCTGCAAACGAAACTTTCTAGACTAGAAGCGCTAGCAGCTACAGTTGTTGGTGAA GAAGAAAAGAAAGCTACATTGCGTGACGTGGAGATGACGAAGAAACAATTGGCGAAGATCAAATACAGGCCATTT GACTATTCACATCAAGGATCGTTGGCGTATATTGGAAGTGAGAAGGCTGTAGCTGATTTGCCTTTTATGAATGGA AATGTCGCAACGGGCGGTGTGGCTACGTACATGTTCTGGCGTAGCGCTTACCTGAGCACGCTGTTCTCTCTTCGG AATCGTACTCTCGTCGCTACTGATTGGATAAAGGTCAAACTCTTTGGCCGTGATGTCGCTCGTGAACAAACTGAA AGGCCAATTATTTCACCATAA |
| Gene | >AgabiH97|031940 ATGCTGTTCCCTCGCAGCCAGGGTCAGTCAGGTTTTTGTTACTGAAGCTGTCGCGGCTTAGCTCAATATTTATCT AGTGATTATTCTCGGACGAACATTGGCACAGTCCAGGCCATGGCAATCATCGAACGTGCCCCTAAGGCAAATTGG ACGCCAAGATTTTTTGGGCGGGGTATGTCAAATTTGCTATCGATACTCCTTGTGCATTCTTTGATAGTCTCTATT AGTCTTCGTTCCTCCGGCGCCGGTTGGCCACGGAATCAAGTAGTGTTAGTTCCCCTTATCTTCTTCCTGACCCGG CGTAACCTACTTGCGGTTCTTCAGGCTTCCGTTTCGCCACCACCTCCCCCTCGCCAGTCAAGATGGCAAGGATTT CTTCAATTTGTAGGAAAGGCAACTCTTATCACGACAATTGGTGGTGTTGGAGCCTTGTACTATATCACTCAGCGT GAAAAAAATCCCGGGCCTCAATTGCCCTTTGACCCAGATAAAAAAACCCTCGTCATCCTCGGTAGTGGCTGGGGA GCCACCAGTCTACTAAAAAATTTGGACACTGCCGACTTTAATGTTGTACGTCATTGTCTCCACCATCAGGTTGCT TTATCCGACGATTATTGGCAGGTGGTTGTTAGCCCGAGAAACTTTTTCCTGTTCACGCCACTCCTGCCCAGCGTT GCAGTGGGTACTCTGAATAACCGGTCTATTATACAGTCTATCCGGTACATCACGCGCCACAAGGCGCGTAATGTC TCCGTCATCGAAGCAGAGGCCACAGACGTTGATGTAAGTTATTTTTAGCAACCCATCATTACTCCCCTCACTTTT GTTTTGTCTAGCCTGTCAACAAACTTATCAAGTTCGCCGGTAATGAGCAACTTGCACATCGGTTGATATTACATT TCTGACATTGACCAGATAACTCGGAGGTCAGAGGTTCTGTCTCATCGACGGCGATTCCATATGATTACCTTGTGT ATGCGGTTGGCGCCGAAACTCAAACTTTCAATATTCCCGGGGTCAAGGAGCATGCTTGTTTTATGAAGGAGCTGA ATGATGCTGAACGTGTAAGATCTTTTTCCATCACAGAGGATGATTGTTGATGTTATTGGTCGTAGTTCCAAAATG AATTCATTGACTGTAAACTTCCTTTCTTAATTGCAAGTCACAAGAGAACTAACGTTTTAAAGGTTTAGAAACCGC TGGATTCCCTGGACAAGATCCTCAGGAAATTGAGCGCTTGCTTCACATGATCGTTGTAGGCGGTGGTCCGACTGG TGTTGAACTAAGTGGTGAACTTCACGACTTCTTGGAAGACGATTTGAAGTCATGGTACCCTGAACTCGCTGGAAA AGTTCGCATCACCCTTGTGGAGGCTTTACCGAGTGTACTCCCCACATTCAGTAAACAGCTCATTGATTACACGCA ATCGACGTTCAAAGAGAGTAAAATTGAGGTTCTCACCAAGACTATGGTGAAGGAAATAAAGGAGAGGAGCGTTAT ACTCCAGATGCCTGATAAATCTATCCAGGAGGTGCCTTGTGGACTCGTGGTTTGGGCCGGCGTGCGTTCTTCTTT TCGTTGTTTCCTGTTCAAGTTAGGCTTATCGTGTTGTAGGGCAATAAAGGCCGTAAAGTCACACAGGACCTTATG GCTAAATTCCCAGAAGTGCAAACGAACCGCCGCGGTATCGTCGTAGACGGTAGGCCTCATTTCCTCTCGAAAACT TATGATCCACAGTCTGATATCCCGCATTAGATTTCCTCCGCATGACAGGTGCTGAAGATAGCATTTTCGCCATTG GTGACTGCACCTCGACCGCATATGCACCCACTGCGCAAGTCGCTTCGCAACAGGGCTCTTATCTCGCCCGCCATC TCCATCAAATGGCTAAACATGACGAGCTGCAAACGAAACTTTCTAGACTAGAAGCGCTAGCAGCTACAGTTGTTG GTGAAGAAGAAAAGAAAGCTACATTGCGTGACGTGGAGATGACGAAGAAACAATTGGCGAAGATCAAATACAGGC CATTTGACTATTCACATCAAGGATCGTTGGCGTATATTGGAAGTGAGAAGGCTGTAGCTGATTTGCCTTTTATGA ATGGAAATGTATGTGTTTGTTCTAGTTTTTTAAGTTTGTCTTTTGACATTTATTTCAGGTCGCAACGGGCGGTGT GGCTACGTACATGTTCTGGCGTAGCGCTTACCTGAGCACGCTGTTCTCTCTTCGGAATCGTACTCTCGTCGCTAC TGATTGGATAAAGGTCAAACTCTTTGGCCGGTACGTAACGATATTTCGTGTTCATCAAAGAAAGTGACTGATTTT TCGTGTGATGTACAGTGATGTCGCTCGTGAACAAACTGAAAGGCCAATTATTTCACCATAA |