Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|031120
Gene name
Locationscaffold_12:816355..816772
Strand-
Gene length (bp)417
Transcript length (bp)417
Coding sequence length (bp)417
Protein length (aa) 139

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.7E-08 61 135

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 39 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|031120
MASGSPTFAKLNEENYSTWSGEMEAWLRASGLWRLVSGRQKAPSTSSPVTQAEVDALDTFEARLDKAAGWLYLMV
EQEQRIHFSGIQDSPVKMWEALEAVHRQKRAGMRFNAYDELFSIRKLDQESLQSLINRVESSK*
Coding >AgabiH97|031120
ATGGCCTCCGGATCACCCACCTTCGCGAAACTCAACGAGGAGAACTACTCCACATGGTCTGGAGAGATGGAGGCG
TGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCAGGCAGGCAGAAGGCTCCCTCCACCTCTAGCCCTGTTACC
CAGGCCGAAGTGGACGCTCTGGACACGTTTGAGGCTCGCTTGGACAAGGCTGCAGGCTGGCTATACCTTATGGTT
GAGCAGGAGCAAAGGATTCACTTCTCTGGCATCCAGGACAGCCCAGTGAAGATGTGGGAGGCTCTAGAGGCTGTA
CATCGTCAGAAAAGGGCTGGAATGCGCTTTAATGCCTATGATGAGCTCTTCTCTATCAGGAAACTCGACCAGGAG
TCCCTCCAATCACTTATCAACAGAGTAGAGAGCTCTAAATGA
Transcript >AgabiH97|031120
ATGGCCTCCGGATCACCCACCTTCGCGAAACTCAACGAGGAGAACTACTCCACATGGTCTGGAGAGATGGAGGCG
TGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCAGGCAGGCAGAAGGCTCCCTCCACCTCTAGCCCTGTTACC
CAGGCCGAAGTGGACGCTCTGGACACGTTTGAGGCTCGCTTGGACAAGGCTGCAGGCTGGCTATACCTTATGGTT
GAGCAGGAGCAAAGGATTCACTTCTCTGGCATCCAGGACAGCCCAGTGAAGATGTGGGAGGCTCTAGAGGCTGTA
CATCGTCAGAAAAGGGCTGGAATGCGCTTTAATGCCTATGATGAGCTCTTCTCTATCAGGAAACTCGACCAGGAG
TCCCTCCAATCACTTATCAACAGAGTAGAGAGCTCTAAATGA
Gene >AgabiH97|031120
ATGGCCTCCGGATCACCCACCTTCGCGAAACTCAACGAGGAGAACTACTCCACATGGTCTGGAGAGATGGAGGCG
TGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCAGGCAGGCAGAAGGCTCCCTCCACCTCTAGCCCTGTTACC
CAGGCCGAAGTGGACGCTCTGGACACGTTTGAGGCTCGCTTGGACAAGGCTGCAGGCTGGCTATACCTTATGGTT
GAGCAGGAGCAAAGGATTCACTTCTCTGGCATCCAGGACAGCCCAGTGAAGATGTGGGAGGCTCTAGAGGCTGTA
CATCGTCAGAAAAGGGCTGGAATGCGCTTTAATGCCTATGATGAGCTCTTCTCTATCAGGAAACTCGACCAGGAG
TCCCTCCAATCACTTATCAACAGAGTAGAGAGCTCTAAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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