Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|031120
Gene name
Locationscaffold_12:816355..816772
Strand-
Gene length (bp)417
Transcript length (bp)417
Coding sequence length (bp)417
Protein length (aa) 139

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 8.7E-08 61 135

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Nucleus Signal peptide 0.3421 0.5315 0.3192 0.2433 0.0201 0.1635 0.2106 0.2659 0.2341 0.0067

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup108
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|018120
Agaricus bisporus var bisporus H39 AgabiH39|525900
Agaricus bisporus var bisporus H39 AgabiH39|523300
Agaricus bisporus var bisporus H39 AgabiH39|521400
Agaricus bisporus var bisporus H39 AgabiH39|500800
Agaricus bisporus var bisporus H39 AgabiH39|500100
Agaricus bisporus var bisporus H39 AgabiH39|477900
Agaricus bisporus var bisporus H39 AgabiH39|463200
Agaricus bisporus var bisporus H39 AgabiH39|544300
Agaricus bisporus var bisporus H39 AgabiH39|352000
Agaricus bisporus var bisporus H39 AgabiH39|251700
Agaricus bisporus var bisporus H39 AgabiH39|224200
Agaricus bisporus var bisporus H39 AgabiH39|219000
Agaricus bisporus var bisporus H39 AgabiH39|094220
Agaricus bisporus var bisporus H39 AgabiH39|082170
Agaricus bisporus var bisporus H39 AgabiH39|082100
Agaricus bisporus var bisporus H39 AgabiH39|395600
Agaricus bisporus var bisporus H97 AgabiH97|082170
Agaricus bisporus var bisporus H97 AgabiH97|082100
Agaricus bisporus var bisporus H97 AgabiH97|081980
Agaricus bisporus var bisporus H97 AgabiH97|075700
Agaricus bisporus var bisporus H97 AgabiH97|060560
Agaricus bisporus var bisporus H97 AgabiH97|044940
Agaricus bisporus var bisporus H97 AgabiH97|036790
Agaricus bisporus var bisporus H97 AgabiH97|031000
Agaricus bisporus var bisporus H97 AgabiH97|031110
Agaricus bisporus var bisporus H97 AgabiH97|030970
Agaricus bisporus var bisporus H97 AgabiH97|025340
Agaricus bisporus var bisporus H97 AgabiH97|018120
Agaricus bisporus var bisporus H97 AgabiH97|013110
Agaricus bisporus var bisporus H97 AgabiH97|031120 (this protein)
Rhodonia placenta FPRL280 RhoplFPRL280|1672_1
Rhodonia placenta FPRL280 RhoplFPRL280|1578_1
Rhodonia placenta FPRL280 RhoplFPRL280|317_7

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|031120
MASGSPTFAKLNEENYSTWSGEMEAWLRASGLWRLVSGRQKAPSTSSPVTQAEVDALDTFEARLDKAAGWLYLMV
EQEQRIHFSGIQDSPVKMWEALEAVHRQKRAGMRFNAYDELFSIRKLDQESLQSLINRVESSK*
Coding >AgabiH97|031120
ATGGCCTCCGGATCACCCACCTTCGCGAAACTCAACGAGGAGAACTACTCCACATGGTCTGGAGAGATGGAGGCG
TGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCAGGCAGGCAGAAGGCTCCCTCCACCTCTAGCCCTGTTACC
CAGGCCGAAGTGGACGCTCTGGACACGTTTGAGGCTCGCTTGGACAAGGCTGCAGGCTGGCTATACCTTATGGTT
GAGCAGGAGCAAAGGATTCACTTCTCTGGCATCCAGGACAGCCCAGTGAAGATGTGGGAGGCTCTAGAGGCTGTA
CATCGTCAGAAAAGGGCTGGAATGCGCTTTAATGCCTATGATGAGCTCTTCTCTATCAGGAAACTCGACCAGGAG
TCCCTCCAATCACTTATCAACAGAGTAGAGAGCTCTAAATGA
Transcript >AgabiH97|031120
ATGGCCTCCGGATCACCCACCTTCGCGAAACTCAACGAGGAGAACTACTCCACATGGTCTGGAGAGATGGAGGCG
TGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCAGGCAGGCAGAAGGCTCCCTCCACCTCTAGCCCTGTTACC
CAGGCCGAAGTGGACGCTCTGGACACGTTTGAGGCTCGCTTGGACAAGGCTGCAGGCTGGCTATACCTTATGGTT
GAGCAGGAGCAAAGGATTCACTTCTCTGGCATCCAGGACAGCCCAGTGAAGATGTGGGAGGCTCTAGAGGCTGTA
CATCGTCAGAAAAGGGCTGGAATGCGCTTTAATGCCTATGATGAGCTCTTCTCTATCAGGAAACTCGACCAGGAG
TCCCTCCAATCACTTATCAACAGAGTAGAGAGCTCTAAATGA
Gene >AgabiH97|031120
ATGGCCTCCGGATCACCCACCTTCGCGAAACTCAACGAGGAGAACTACTCCACATGGTCTGGAGAGATGGAGGCG
TGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCAGGCAGGCAGAAGGCTCCCTCCACCTCTAGCCCTGTTACC
CAGGCCGAAGTGGACGCTCTGGACACGTTTGAGGCTCGCTTGGACAAGGCTGCAGGCTGGCTATACCTTATGGTT
GAGCAGGAGCAAAGGATTCACTTCTCTGGCATCCAGGACAGCCCAGTGAAGATGTGGGAGGCTCTAGAGGCTGTA
CATCGTCAGAAAAGGGCTGGAATGCGCTTTAATGCCTATGATGAGCTCTTCTCTATCAGGAAACTCGACCAGGAG
TCCCTCCAATCACTTATCAACAGAGTAGAGAGCTCTAAATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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