© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|030440 |
| Gene name | |
| Location | scaffold_12:614820..616312 |
| Strand | + |
| Gene length (bp) | 1492 |
| Transcript length (bp) | 1074 |
| Coding sequence length (bp) | 1074 |
| Protein length (aa) | 358 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00775 | Dioxygenase_C | Dioxygenase | 4.1E-07 | 123 | 182 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0008199 | ferric iron binding | Yes |
| GO:0006725 | cellular aromatic compound metabolic process | Yes |
| GO:0046872 | metal ion binding | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0005506 | iron ion binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0043169 | cation binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 242.64 | 126.83 | 358.45 |
| Initials | Initials knots | 160.65 | 95.75 | 225.55 |
| Pileal_Stipeal_center | Stage I stipe center | 128.40 | 76.46 | 180.35 |
| Pileal_Stipeal_shell | Stage I stipe shell | 91.72 | 54.67 | 128.77 |
| DIF_stipe_center | Stage II stipe center | 112.43 | 67.45 | 157.41 |
| DIF_stipe_shell | Stage II stipe shell | 153.66 | 91.03 | 216.28 |
| DIF_stipe_skin | Stage II stipe skin | 130.44 | 78.31 | 182.57 |
| DIF_cap_skin | Stage II cap skin | 106.66 | 64.08 | 149.24 |
| DIF_cap_tissue | Stage II cap tissue | 103.98 | 62.39 | 145.57 |
| DIF_gill_tissue | Stage II gill tissue | 91.99 | 55.13 | 128.84 |
| YFB_stipe_center | Young fruiting body stipe center | 148.71 | 89.11 | 208.32 |
| YFB_stipe_shell | Young fruiting body stipe shell | 160.82 | 95.42 | 226.21 |
| YFB_stipe_skin | Young fruiting body stipe skin | 137.29 | 82.35 | 192.22 |
| YFB_cap_skin | Young fruiting body cap skin | 155.09 | 92.37 | 217.82 |
| YFB_cap_tissue | Young fruiting body cap tissue | 157.61 | 93.95 | 221.26 |
| YFB_gill_tissue | Young fruiting body gill tissue | 224.29 | 118.56 | 330.02 |
| YFB_veil | Young fruiting body veil | 119.38 | 68.88 | 169.87 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.001140 | yes |
| Casing | YFB_stipe_center | 0.120821 | no |
| Casing | YFB_stipe_shell | 0.208798 | no |
| Casing | YFB_stipe_skin | 0.059712 | no |
| Casing | YFB_cap_skin | 0.166190 | no |
| Casing | YFB_cap_tissue | 0.184329 | no |
| Casing | YFB_gill_tissue | 0.896523 | no |
| Casing | YFB_veil | 0.018344 | yes |
| Casing | Initials | 0.209608 | no |
| Casing | Pileal_Stipeal_center | 0.034837 | yes |
| Casing | Pileal_Stipeal_shell | 0.001140 | yes |
| Casing | DIF_stipe_center | 0.009773 | yes |
| Casing | DIF_stipe_shell | 0.151108 | no |
| Casing | DIF_stipe_skin | 0.035765 | yes |
| Casing | DIF_cap_skin | 0.007092 | yes |
| Casing | DIF_cap_tissue | 0.005302 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.077343 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.036228 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.156253 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.054575 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.041824 | yes |
| DIF_gill_tissue | YFB_gill_tissue | 0.001140 | yes |
| DIF_gill_tissue | YFB_veil | 0.442810 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.871294 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.865539 | no |
| YFB_stipe_center | YFB_cap_skin | 0.935292 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.907402 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.197111 | no |
| YFB_stipe_center | YFB_veil | 0.543768 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.688138 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.946045 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.970824 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.339307 | no |
| YFB_stipe_shell | YFB_veil | 0.368886 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.780875 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.743305 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.116868 | no |
| YFB_stipe_skin | YFB_veil | 0.743755 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.975985 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.274557 | no |
| YFB_cap_skin | YFB_veil | 0.449791 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.301839 | no |
| YFB_cap_tissue | YFB_veil | 0.414862 | no |
| YFB_gill_tissue | YFB_veil | 0.033906 | yes |
| Initials | DIF_gill_tissue | 0.039836 | yes |
| Initials | YFB_stipe_center | 0.873714 | no |
| Initials | YFB_stipe_shell | 0.997941 | no |
| Initials | YFB_stipe_skin | 0.698694 | no |
| Initials | YFB_cap_skin | 0.948658 | no |
| Initials | YFB_cap_tissue | 0.972695 | no |
| Initials | YFB_gill_tissue | 0.341679 | no |
| Initials | YFB_veil | 0.373826 | no |
| Initials | Pileal_Stipeal_center | 0.536769 | no |
| Initials | Pileal_Stipeal_shell | 0.039390 | yes |
| Initials | DIF_stipe_center | 0.232745 | no |
| Initials | DIF_stipe_shell | 0.934430 | no |
| Initials | DIF_stipe_skin | 0.573429 | no |
| Initials | DIF_cap_skin | 0.151524 | no |
| Initials | DIF_cap_tissue | 0.122022 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.283169 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.723655 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.533406 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.893375 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.624459 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.579844 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.069013 | no |
| Pileal_Stipeal_center | YFB_veil | 0.885120 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.285140 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.755707 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.644752 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.978611 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.626027 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.562355 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.995045 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.077161 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.035076 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.163166 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.052745 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.042260 | yes |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.001140 | yes |
| Pileal_Stipeal_shell | YFB_veil | 0.449437 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.586609 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.055182 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.237553 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.713713 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.774343 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.577425 | no |
| DIF_stipe_center | YFB_stipe_center | 0.378727 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.228595 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.578713 | no |
| DIF_stipe_center | YFB_cap_skin | 0.300978 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.266762 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.019442 | yes |
| DIF_stipe_center | YFB_veil | 0.907292 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.313798 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.716507 | no |
| DIF_stipe_center | DIF_cap_skin | 0.919366 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.870176 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.056367 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.951852 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.933113 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.799725 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.986413 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.962650 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.252511 | no |
| DIF_stipe_shell | YFB_veil | 0.468197 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.677355 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.209256 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.173847 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.241032 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.754130 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.557363 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.922711 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.653374 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.606857 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.074840 | no |
| DIF_stipe_skin | YFB_veil | 0.856816 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.573490 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.510817 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.715722 | no |
| DIF_cap_skin | YFB_stipe_center | 0.263990 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.145518 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.444000 | no |
| DIF_cap_skin | YFB_cap_skin | 0.200439 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.173970 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.010093 | yes |
| DIF_cap_skin | YFB_veil | 0.804534 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.962070 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.777187 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.230769 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.119615 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.388722 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.170874 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.144159 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.008121 | yes |
| DIF_cap_tissue | YFB_veil | 0.747867 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|030440 MRALTNLLFSLSLAAALVAAHKEPKSQEEVEIQRALQAAAYHCAPAVERYTAARKRSWAQKVLAGRPELPGYQDL FSSDIYDDVEVGTLPTPEDDSQTIMGCTPVSTSTIQNNTCVLSPVVTEGPYFHEAGHPIRQNIAETQDGLLLLLD IGVIDVNTCKPLPNVLVDIWQANATGYYAGHPVPRPEELTVKPQVGGKRSGLLPPFPRTINHETFLRGAWPTDGN GVAQFTTIFPGYYTGRATHVHAKVFPEWTTHPNGSYTGDRLVHVGQFFFEDEMNLVVDKMHPYTENPIRDTYGRT RNWRDSLNIFEDSFGPEGKYNPVFTTHLLGGVVRQGLMGYITIGVNGSTDLENRWRG* |
| Coding | >AgabiH97|030440 ATGCGAGCACTCACGAACCTACTATTCTCGCTTTCACTTGCAGCTGCGTTGGTTGCAGCCCACAAAGAGCCTAAG AGTCAGGAGGAAGTTGAGATCCAACGGGCGCTGCAGGCTGCTGCATATCATTGTGCACCAGCCGTCGAACGCTAC ACTGCTGCACGTAAACGGTCATGGGCGCAGAAAGTTCTGGCGGGTCGACCGGAATTACCGGGTTATCAAGATCTC TTCAGTTCCGATATTTACGACGATGTTGAAGTAGGGACTTTGCCGACTCCTGAGGACGACAGTCAGACCATTATG GGATGTACTCCGGTGTCGACTTCCACAATCCAAAATAATACGTGTGTTCTCTCACCGGTGGTCACGGAGGGCCCT TATTTCCATGAAGCCGGGCATCCCATTCGACAGAATATTGCAGAGACTCAAGACGGATTGTTGCTGCTTCTTGAT ATTGGAGTCATAGATGTCAATACTTGTAAGCCCCTTCCAAATGTTCTTGTGGACATCTGGCAAGCAAATGCCACA GGCTATTATGCTGGGCATCCTGTGCCTCGACCAGAGGAGCTAACAGTCAAACCTCAAGTGGGTGGCAAGCGATCC GGCCTTCTTCCACCATTCCCGCGAACAATCAACCATGAGACTTTCTTACGTGGTGCTTGGCCGACTGACGGGAAT GGCGTGGCTCAATTTACCACCATTTTCCCGGGCTATTACACAGGTCGAGCGACGCATGTCCATGCCAAAGTATTT CCGGAGTGGACGACGCATCCTAATGGAAGTTATACTGGCGACCGCTTGGTGCATGTAGGGCAGTTCTTCTTCGAA GATGAAATGAATTTGGTTGTCGACAAGATGCACCCATATACAGAAAACCCTATCAGAGATACTTATGGCCGAACG CGCAATTGGCGTGATTCGCTTAATATCTTCGAAGATTCTTTTGGGCCTGAAGGTAAATACAACCCTGTATTTACA ACCCACCTTTTGGGAGGTGTCGTGAGGCAAGGATTGATGGGTTATATCACTATCGGTGTAAATGGTAGTACAGAC CTTGAGAACCGATGGAGAGGTTAA |
| Transcript | >AgabiH97|030440 ATGCGAGCACTCACGAACCTACTATTCTCGCTTTCACTTGCAGCTGCGTTGGTTGCAGCCCACAAAGAGCCTAAG AGTCAGGAGGAAGTTGAGATCCAACGGGCGCTGCAGGCTGCTGCATATCATTGTGCACCAGCCGTCGAACGCTAC ACTGCTGCACGTAAACGGTCATGGGCGCAGAAAGTTCTGGCGGGTCGACCGGAATTACCGGGTTATCAAGATCTC TTCAGTTCCGATATTTACGACGATGTTGAAGTAGGGACTTTGCCGACTCCTGAGGACGACAGTCAGACCATTATG GGATGTACTCCGGTGTCGACTTCCACAATCCAAAATAATACGTGTGTTCTCTCACCGGTGGTCACGGAGGGCCCT TATTTCCATGAAGCCGGGCATCCCATTCGACAGAATATTGCAGAGACTCAAGACGGATTGTTGCTGCTTCTTGAT ATTGGAGTCATAGATGTCAATACTTGTAAGCCCCTTCCAAATGTTCTTGTGGACATCTGGCAAGCAAATGCCACA GGCTATTATGCTGGGCATCCTGTGCCTCGACCAGAGGAGCTAACAGTCAAACCTCAAGTGGGTGGCAAGCGATCC GGCCTTCTTCCACCATTCCCGCGAACAATCAACCATGAGACTTTCTTACGTGGTGCTTGGCCGACTGACGGGAAT GGCGTGGCTCAATTTACCACCATTTTCCCGGGCTATTACACAGGTCGAGCGACGCATGTCCATGCCAAAGTATTT CCGGAGTGGACGACGCATCCTAATGGAAGTTATACTGGCGACCGCTTGGTGCATGTAGGGCAGTTCTTCTTCGAA GATGAAATGAATTTGGTTGTCGACAAGATGCACCCATATACAGAAAACCCTATCAGAGATACTTATGGCCGAACG CGCAATTGGCGTGATTCGCTTAATATCTTCGAAGATTCTTTTGGGCCTGAAGGTAAATACAACCCTGTATTTACA ACCCACCTTTTGGGAGGTGTCGTGAGGCAAGGATTGATGGGTTATATCACTATCGGTGTAAATGGTAGTACAGAC CTTGAGAACCGATGGAGAGGTTAA |
| Gene | >AgabiH97|030440 ATGCGAGCACTCACGAACCTACTATTCTCGCTTTCACTTGCAGCTGCGTTGGTTGCAGCCCACAAAGAGCCTAAG AGTCAGGAGGAAGTTGAGATCCAACGGGCGCTGCAGGCTGCTGCATATCATGTGAGCCTTATTTGGTCATGTTCA CCTCCTCTCTCTGACCGCCACTCGCAGTGTGCACCAGCCGTCGAACGCTACACTGCTGCACGTAAACGGTCATGG GCGCAGAAAGTTCTGGCGGGTCGACCGGAATTACCGGGTTATCAAGATCTCTTCAGTTCCGATATTTACGACGAT GTTGAAGTAGGGACTTTGCCGACTCCTGAGGACGACAGTCAGACCATTATGGGATGTACTCCGGTGTCGACTTCC ACAATCCAAAATAATACGTGTGTTCTCTCACCGGTGGTCACGGAGGGCCCTTATTTCCATGAAGCCGGGCATCCC ATTCGACAGAATATTGCAGAGACTCAAGACGGATTGTTGCTGGTGTGTGATGTTTCGTACCTTGTTTTTGGCATC CTGTCCTCCTAAAAACGCTTCATAGCTTCTTGATATTGGAGTCATAGATGTCAATACTTGTAAGCCCCTTCCAAA TGTTCTTGTGGACATCTGGCAAGCAAATGCCACAGGCTATTATGCTGGTATGTCTTATCCCCTTTTCTCTAGTCT CTAGCCTCATCATACTTCGTTTAGGGCATCCTGTGCCTCGACCAGAGGAGCTAACAGTCAAACCTCAAGTGGGTG GCAAGCGATCCGGCCTTCTTCCACCATTCCCGCGAACAATCAACCATGAGACTTTCTTACGTGGTGCTTGGCCGA CTGACGGGAATGGCGTGGCTCAATTTACCAGTACGTCGTCCTTGGCAAAGTGGGGCGGGAGATTTCCCAAACTGA CGATTTCGCCAAACCAGCCATTTTCCCGGGCTATTACACAGGTCGAGCGACGCATGTCCATGCCAAAGTATTTCC GGAGTGGACGACGCATCCTAATGGAAGTTATACTGGCGACCGCTTGGTGCATGTAGGGCAGTTCTTCTTCGAAGA TGAAATGAATTTGGTTGTCGACAAGGTGAGTTATAGGTATTTTGGCAAGATTGGGAAGAAACCTTCCGAGGCTTA ATTCGCCTTCACCAACTTTATTGTTCTATTTTTGGCTACGCCGTATATTGGTCTGTGCCTTGCCTAGTCGACTGG GCTAACCCGTTTTCAGATGCACCCATATACAGAAAACCCTATCAGAGATACTTATGGCCGAACGCGCAATTGGCG TGATTCGCTTAATATCTTCGAAGATTCTTTTGGGCCTGAAGGTAAATACAACCCTGTATTTACAACCCACCTTTT GGGAGGTGTCGTGAGGCAAGGATTGATGGGTTATATCACTATCGTAAGTTTCGTGATCATCACTCTTAACTCTTG AGTATTGATGCATCGTTATTAGGGTGTAAATGGTAGTACAGACCTTGAGAACCGATGGAGAGGTTAA |