© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|030430 |
| Gene name | |
| Location | scaffold_12:612213..613605 |
| Strand | + |
| Gene length (bp) | 1392 |
| Transcript length (bp) | 1029 |
| Coding sequence length (bp) | 1029 |
| Protein length (aa) | 343 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00775 | Dioxygenase_C | Dioxygenase | 3.5E-08 | 124 | 235 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0008199 | ferric iron binding | Yes |
| GO:0006725 | cellular aromatic compound metabolic process | Yes |
| GO:0046872 | metal ion binding | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0009987 | cellular process | No |
| GO:0005506 | iron ion binding | No |
| GO:0046914 | transition metal ion binding | No |
| GO:0043169 | cation binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 70.01 | 33.76 | 106.27 |
| Initials | Initials knots | 5.62 | 2.42 | 8.83 |
| Pileal_Stipeal_center | Stage I stipe center | 4.04 | 1.49 | 6.59 |
| Pileal_Stipeal_shell | Stage I stipe shell | 2.93 | 1.07 | 4.80 |
| DIF_stipe_center | Stage II stipe center | 1.40 | 0.37 | 2.43 |
| DIF_stipe_shell | Stage II stipe shell | 1.30 | 0.34 | 2.26 |
| DIF_stipe_skin | Stage II stipe skin | 2.45 | 0.85 | 4.05 |
| DIF_cap_skin | Stage II cap skin | 2.78 | 1.01 | 4.55 |
| DIF_cap_tissue | Stage II cap tissue | 2.94 | 1.05 | 4.84 |
| DIF_gill_tissue | Stage II gill tissue | 2.46 | 0.86 | 4.05 |
| YFB_stipe_center | Young fruiting body stipe center | 1.10 | 0.26 | 1.94 |
| YFB_stipe_shell | Young fruiting body stipe shell | 0.99 | 0.19 | 1.79 |
| YFB_stipe_skin | Young fruiting body stipe skin | 2.54 | 0.90 | 4.17 |
| YFB_cap_skin | Young fruiting body cap skin | 2.58 | 0.91 | 4.26 |
| YFB_cap_tissue | Young fruiting body cap tissue | 2.18 | 0.70 | 3.67 |
| YFB_gill_tissue | Young fruiting body gill tissue | 2.73 | 0.99 | 4.48 |
| YFB_veil | Young fruiting body veil | 2.66 | 0.93 | 4.38 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.000613 | yes |
| Casing | YFB_stipe_center | 0.000613 | yes |
| Casing | YFB_stipe_shell | 0.000613 | yes |
| Casing | YFB_stipe_skin | 0.000613 | yes |
| Casing | YFB_cap_skin | 0.000613 | yes |
| Casing | YFB_cap_tissue | 0.000613 | yes |
| Casing | YFB_gill_tissue | 0.000613 | yes |
| Casing | YFB_veil | 0.000613 | yes |
| Casing | Initials | 0.000613 | yes |
| Casing | Pileal_Stipeal_center | 0.000613 | yes |
| Casing | Pileal_Stipeal_shell | 0.000613 | yes |
| Casing | DIF_stipe_center | 0.000613 | yes |
| Casing | DIF_stipe_shell | 0.000613 | yes |
| Casing | DIF_stipe_skin | 0.000613 | yes |
| Casing | DIF_cap_skin | 0.000613 | yes |
| Casing | DIF_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.105377 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.088095 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.971872 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.954987 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.886096 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.896965 | no |
| DIF_gill_tissue | YFB_veil | 0.924214 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.918698 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.089469 | no |
| YFB_stipe_center | YFB_cap_skin | 0.076803 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.209028 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.058926 | no |
| YFB_stipe_center | YFB_veil | 0.069013 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.075556 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.070681 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.158357 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.055583 | no |
| YFB_stipe_shell | YFB_veil | 0.061662 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.983532 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.849818 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.930574 | no |
| YFB_stipe_skin | YFB_veil | 0.955365 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.825118 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.947324 | no |
| YFB_cap_skin | YFB_veil | 0.970918 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.751126 | no |
| YFB_cap_tissue | YFB_veil | 0.782614 | no |
| YFB_gill_tissue | YFB_veil | 0.972098 | no |
| Initials | DIF_gill_tissue | 0.046745 | yes |
| Initials | YFB_stipe_center | 0.000613 | yes |
| Initials | YFB_stipe_shell | 0.000613 | yes |
| Initials | YFB_stipe_skin | 0.054776 | no |
| Initials | YFB_cap_skin | 0.056170 | no |
| Initials | YFB_cap_tissue | 0.026461 | yes |
| Initials | YFB_gill_tissue | 0.082806 | no |
| Initials | YFB_veil | 0.070137 | no |
| Initials | Pileal_Stipeal_center | 0.527131 | no |
| Initials | Pileal_Stipeal_shell | 0.135297 | no |
| Initials | DIF_stipe_center | 0.001625 | yes |
| Initials | DIF_stipe_shell | 0.001625 | yes |
| Initials | DIF_stipe_skin | 0.044631 | yes |
| Initials | DIF_cap_skin | 0.095962 | no |
| Initials | DIF_cap_tissue | 0.142929 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.308351 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.007782 | yes |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.006032 | yes |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.356456 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.377348 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.196757 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.465509 | no |
| Pileal_Stipeal_center | YFB_veil | 0.415658 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.574622 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.019169 | yes |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.011659 | yes |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.304778 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.487126 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.585138 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.807120 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.040501 | yes |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.035765 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.850408 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.868601 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.648203 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.935416 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.902064 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.134284 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.099434 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.803911 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.950083 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.995933 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.300398 | no |
| DIF_stipe_center | YFB_stipe_center | 0.767889 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.647578 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.269061 | no |
| DIF_stipe_center | YFB_cap_skin | 0.245876 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.473074 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.191454 | no |
| DIF_stipe_center | YFB_veil | 0.216300 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.939704 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.301454 | no |
| DIF_stipe_center | DIF_cap_skin | 0.179578 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.139559 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.217311 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.851079 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.740785 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.194366 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.178449 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.367174 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.132860 | no |
| DIF_stipe_shell | YFB_veil | 0.152465 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.218638 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.123509 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.090658 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.995589 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.106812 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.085387 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.969193 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.952876 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.886418 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.892616 | no |
| DIF_stipe_skin | YFB_veil | 0.920385 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.872830 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.798401 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.875557 | no |
| DIF_cap_skin | YFB_stipe_center | 0.055583 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.046327 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.912650 | no |
| DIF_cap_skin | YFB_cap_skin | 0.930781 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.724823 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.986072 | no |
| DIF_cap_skin | YFB_veil | 0.957590 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.946226 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.802082 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.042260 | yes |
| DIF_cap_tissue | YFB_stipe_shell | 0.035765 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.847122 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.864313 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.642344 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.932199 | no |
| DIF_cap_tissue | YFB_veil | 0.896965 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|030430 MLLLASLFVSLLSTTCFVSAHKEPKTPEEIEVQRALQAAAYYCSPTVDQFTAARKRAWARKINAGQGELPSYEKM FLNMHEISQGSLTFPERLEDDDIDMGCTPMSTTEIQNNTCVLAPEVAEGPYWHEVGHPIRQNIADYQDGLLLLLD IGVIDVETCKPLPNALVDLWQTNATGEYSGHPTVFPIVNDNPLPTTSPRTLPEETWLRGAWPTDENGVAQFTTIF PGYYQGRATHIHAKVFPEWKVLKNNTFMGSRVVHVGQFFFDDEINAVVDKMHPYTENPIANTWGRTPNSRDSFNL FEDAMGPEGKYNPIFKMHLLGGVVRQGLIGYITMGVNASANF* |
| Coding | >AgabiH97|030430 ATGCTCTTACTCGCCTCTCTCTTCGTGTCTTTATTATCCACCACATGTTTCGTCTCAGCTCACAAAGAACCAAAA ACTCCTGAAGAGATCGAAGTCCAACGTGCACTCCAAGCTGCCGCCTATTACTGTTCACCCACAGTGGACCAGTTC ACAGCAGCGCGGAAGCGAGCATGGGCACGGAAAATCAATGCGGGCCAGGGAGAATTACCCAGTTACGAGAAAATG TTCTTGAACATGCACGAAATTAGTCAAGGCTCGCTTACGTTTCCAGAACGATTGGAAGATGATGATATTGATATG GGTTGCACACCTATGTCAACAACGGAAATTCAGAATAACACTTGTGTTCTTGCTCCTGAAGTTGCTGAAGGTCCA TACTGGCACGAAGTGGGACACCCCATACGGCAGAATATCGCGGACTATCAGGACGGTTTGTTACTGCTACTTGAC ATCGGAGTTATAGATGTCGAAACCTGCAAGCCTCTTCCGAACGCCTTGGTAGATTTATGGCAGACCAATGCTACA GGGGAATATTCTGGCCACCCCACCGTATTTCCAATCGTCAACGATAATCCTCTTCCGACCACGTCTCCTCGTACT CTACCAGAAGAAACCTGGTTACGAGGTGCATGGCCCACCGACGAGAATGGTGTCGCCCAATTCACTACCATATTT CCGGGCTACTACCAAGGGCGTGCAACACATATCCATGCCAAAGTCTTTCCCGAATGGAAGGTTCTCAAGAATAAT ACCTTCATGGGCTCAAGAGTCGTCCATGTCGGACAATTCTTTTTTGATGACGAAATCAATGCGGTTGTCGATAAG ATGCATCCTTATACCGAGAATCCAATTGCAAATACGTGGGGTCGAACGCCTAATTCGCGTGACTCCTTCAATCTT TTCGAGGATGCTATGGGTCCTGAGGGAAAATATAACCCCATCTTCAAAATGCATTTGTTGGGTGGCGTCGTGAGA CAAGGTTTAATTGGTTATATTACAATGGGTGTCAATGCCAGTGCGAATTTTTGA |
| Transcript | >AgabiH97|030430 ATGCTCTTACTCGCCTCTCTCTTCGTGTCTTTATTATCCACCACATGTTTCGTCTCAGCTCACAAAGAACCAAAA ACTCCTGAAGAGATCGAAGTCCAACGTGCACTCCAAGCTGCCGCCTATTACTGTTCACCCACAGTGGACCAGTTC ACAGCAGCGCGGAAGCGAGCATGGGCACGGAAAATCAATGCGGGCCAGGGAGAATTACCCAGTTACGAGAAAATG TTCTTGAACATGCACGAAATTAGTCAAGGCTCGCTTACGTTTCCAGAACGATTGGAAGATGATGATATTGATATG GGTTGCACACCTATGTCAACAACGGAAATTCAGAATAACACTTGTGTTCTTGCTCCTGAAGTTGCTGAAGGTCCA TACTGGCACGAAGTGGGACACCCCATACGGCAGAATATCGCGGACTATCAGGACGGTTTGTTACTGCTACTTGAC ATCGGAGTTATAGATGTCGAAACCTGCAAGCCTCTTCCGAACGCCTTGGTAGATTTATGGCAGACCAATGCTACA GGGGAATATTCTGGCCACCCCACCGTATTTCCAATCGTCAACGATAATCCTCTTCCGACCACGTCTCCTCGTACT CTACCAGAAGAAACCTGGTTACGAGGTGCATGGCCCACCGACGAGAATGGTGTCGCCCAATTCACTACCATATTT CCGGGCTACTACCAAGGGCGTGCAACACATATCCATGCCAAAGTCTTTCCCGAATGGAAGGTTCTCAAGAATAAT ACCTTCATGGGCTCAAGAGTCGTCCATGTCGGACAATTCTTTTTTGATGACGAAATCAATGCGGTTGTCGATAAG ATGCATCCTTATACCGAGAATCCAATTGCAAATACGTGGGGTCGAACGCCTAATTCGCGTGACTCCTTCAATCTT TTCGAGGATGCTATGGGTCCTGAGGGAAAATATAACCCCATCTTCAAAATGCATTTGTTGGGTGGCGTCGTGAGA CAAGGTTTAATTGGTTATATTACAATGGGTGTCAATGCCAGTGCGAATTTTTGA |
| Gene | >AgabiH97|030430 ATGCTCTTACTCGCCTCTCTCTTCGTGTCTTTATTATCCACCACATGTTTCGTCTCAGCTCACAAAGAACCAAAA ACTCCTGAAGAGATCGAAGTCCAACGTGCACTCCAAGCTGCCGCCTATTACGTGAGAGTCTCATCCTACATTTGT TTCTCGGTGGGGCTGACGGATCAATGGTAGTGTTCACCCACAGTGGACCAGTTCACAGCAGCGCGGAAGCGAGCA TGGGCACGGAAAATCAATGCGGGCCAGGGAGAATTACCCAGTTACGAGAAAATGTTCTTGAACATGCACGAAATT AGTCAAGGCTCGCTTACGTTTCCAGAACGATTGGAAGATGATGATATTGATATGGGTTGCACACCTATGTCAACA ACGGAAATTCAGAATAACACTTGTGTTCTTGCTCCTGAAGTTGCTGAAGGTCCATACTGGCACGAAGTGGGACAC CCCATACGGCAGAATATCGCGGACTATCAGGACGGTTTGTTACTGGTTCGTGAGCTAAATTTGATTCCAAACGGA GTTGGCGCATTGCTCACCGGTATGACGTCAAATTCTAGCTACTTGACATCGGAGTTATAGATGTCGAAACCTGCA AGCCTCTTCCGAACGCCTTGGTAGATTTATGGCAGACCAATGCTACAGGGGAATATTCTGGTATGTCGCTTTGTT GATATGACGGCGTTCATATTGAGAGAACTGACCCATCACGATTGTTTCTCTGGTTAGGCCACCCCACCGTATTTC CAATCGTCAACGATAATCCTCTTCCGACCACGTCTCCTCGTACTCTACCAGAAGAAACCTGGTTACGAGGTGCAT GGCCCACCGACGAGAATGGTGTCGCCCAATTCACTAGTATGTTTACCCACTCATCCCTTCTTTCGCTCTCATTCT CTAATTATCATCGTTCAAGCCATATTTCCGGGCTACTACCAAGGGCGTGCAACACATATCCATGCCAAAGTCTTT CCCGAATGGAAGGTTCTCAAGAATAATACCTTCATGGGCTCAAGAGTCGTCCATGTCGGACAATTCTTTTTTGAT GACGAAATCAATGCGGTTGTCGATAAGGTATGTGTGGAAAATACCACTAGACACTACCGTCATTGATTCCGGTTT AGATGCATCCTTATACCGAGAATCCAATTGCAAATACGTGGGGTCGAACGCCTAATTCGCGTGACTCCTTCAATC TTTTCGAGGATGCTATGGGTCCTGAGGGAAAATATAACCCCATCTTCAAAATGCATTTGTTGGGTGGCGTCGTGA GACAAGGTTTAATTGGTTATATTACAATGGTAAGTTCACCGGTATAATGTATGTTGATATGAAGTTTGAAAACCT GAAACCATTTTCTAGGGTGTCAATGCCAGTGCGAATTTTTGA |