Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|029860
Gene name
Locationscaffold_12:462437..463294
Strand+
Gene length (bp)857
Transcript length (bp)696
Coding sequence length (bp)696
Protein length (aa) 232

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 22 0.45

Transmembrane Domains

Domain # Start End Length
1 5 27 22
2 147 169 22
3 181 203 22
4 207 229 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|029860
MRSFASIATFATLAFAAVCSALPTANVADVANKLPAGAPAVVPRGGAADAVGGYYHNYPRGGEQHKSVLEIIVDV
TAEVKPMCEKLTAAISADIEVDAAVKVSLDVLADIKVALVAAVADIKAAVHVGVDLLVLNGVTVTVDVVAKIVAE
LLIVVLAVIGLVVKVCVSVDISALLKIIVDINVLLSVIVSLVVQVCGGLIVVLLPLLGGVIDICVRLHLLALLKV
LAVVKV*
Coding >AgabiH97|029860
ATGCGTTCTTTTGCCTCCATCGCTACTTTTGCAACCCTCGCCTTCGCGGCTGTTTGCTCTGCTCTCCCCACTGCC
AATGTGGCCGATGTAGCTAACAAGCTTCCCGCTGGTGCTCCTGCTGTCGTCCCTCGGGGCGGTGCCGCTGATGCA
GTCGGTGGTTATTACCACAACTACCCCCGTGGTGGCGAGCAACACAAGTCTGTTCTCGAAATCATCGTTGATGTC
ACCGCTGAGGTGAAGCCGATGTGCGAGAAATTGACTGCTGCCATCTCGGCTGACATTGAGGTCGATGCCGCTGTC
AAGGTCTCTCTCGATGTCCTTGCCGACATCAAGGTTGCTCTCGTCGCGGCCGTTGCTGATATCAAGGCTGCCGTC
CATGTTGGTGTTGACCTCCTCGTCCTCAACGGTGTCACCGTTACCGTCGATGTTGTTGCCAAGATTGTGGCCGAA
CTCCTTATTGTTGTTTTGGCTGTCATTGGGCTCGTTGTGAAGGTGTGCGTGTCTGTTGACATCAGCGCCCTCCTC
AAGATCATCGTCGATATCAATGTCCTCCTTTCCGTCATTGTGTCCCTTGTTGTCCAAGTCTGCGGTGGTCTCATT
GTTGTCCTCCTCCCTCTCCTCGGCGGTGTTATCGACATCTGTGTCAGGCTCCACCTCCTTGCTCTCCTCAAGGTG
TTGGCTGTTGTCAAGGTTTAA
Transcript >AgabiH97|029860
ATGCGTTCTTTTGCCTCCATCGCTACTTTTGCAACCCTCGCCTTCGCGGCTGTTTGCTCTGCTCTCCCCACTGCC
AATGTGGCCGATGTAGCTAACAAGCTTCCCGCTGGTGCTCCTGCTGTCGTCCCTCGGGGCGGTGCCGCTGATGCA
GTCGGTGGTTATTACCACAACTACCCCCGTGGTGGCGAGCAACACAAGTCTGTTCTCGAAATCATCGTTGATGTC
ACCGCTGAGGTGAAGCCGATGTGCGAGAAATTGACTGCTGCCATCTCGGCTGACATTGAGGTCGATGCCGCTGTC
AAGGTCTCTCTCGATGTCCTTGCCGACATCAAGGTTGCTCTCGTCGCGGCCGTTGCTGATATCAAGGCTGCCGTC
CATGTTGGTGTTGACCTCCTCGTCCTCAACGGTGTCACCGTTACCGTCGATGTTGTTGCCAAGATTGTGGCCGAA
CTCCTTATTGTTGTTTTGGCTGTCATTGGGCTCGTTGTGAAGGTGTGCGTGTCTGTTGACATCAGCGCCCTCCTC
AAGATCATCGTCGATATCAATGTCCTCCTTTCCGTCATTGTGTCCCTTGTTGTCCAAGTCTGCGGTGGTCTCATT
GTTGTCCTCCTCCCTCTCCTCGGCGGTGTTATCGACATCTGTGTCAGGCTCCACCTCCTTGCTCTCCTCAAGGTG
TTGGCTGTTGTCAAGGTTTAA
Gene >AgabiH97|029860
ATGCGTTCTTTTGCCTCCATCGCTACTTTTGCAACCCTCGCCTTCGCGGCTGTTTGCTCTGCTCTCCCCACTGCC
AATGTGGCCGATGTAGCTAACAAGCTTGTGAGTTTTATTTTGGTCTTGTATTGTCTTAATTTTTAACGTTCAAAT
TTTCAGCCCGCTGGTGCTCCTGCTGTCGTCCCTCGGGGCGGTGCCGCTGATGCAGTCGGTGGTTATTACCACAAC
TACCCCCGTGGTGGCGAGCAACACAAGTCTGTTCTCGAAATCATCGTTGATGTCACCGCTGAGGTGAAGCCGATG
TGCGAGAAATTGAGTAAGTTGAAGTCTTTCGTGACTGCCTGTAATATCTTATTCATATTTGTCTCAAGCTGCTGC
CATCTCGGCTGACATTGAGGTCGATGCCGCTGTCAAGGTCTCTCTCGATGTCCTTGCCGACATCAAGGTTGCTCT
CGTCGCGGCCGTTGCTGATATCAAGGCTGCCGTCCATGTTGGTGTTGACCTCCTCGTCCTCAACGGTGTCACCGT
TACCGTCGATGTTGTTGCCAAGATTGTGGCCGAACTCCTTATTGTACGTTGGTTTTGATTTCAGTAAAGGATTTG
TGACTAACTCTTTGGCGCAGGTTGTTTTGGCTGTCATTGGGCTCGTTGTGAAGGTGTGCGTGTCTGTTGACATCA
GCGCCCTCCTCAAGATCATCGTCGATATCAATGTCCTCCTTTCCGTCATTGTGTCCCTTGTTGTCCAAGTCTGCG
GTGGTCTCATTGTTGTCCTCCTCCCTCTCCTCGGCGGTGTTATCGACATCTGTGTCAGGCTCCACCTCCTTGCTC
TCCTCAAGGTGTTGGCTGTTGTCAAGGTTTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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