Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|029640
Gene name
Locationscaffold_12:403985..407158
Strand-
Gene length (bp)3173
Transcript length (bp)2946
Coding sequence length (bp)2946
Protein length (aa) 982

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14634 zf-RING_5 zinc-RING finger domain 2.5E-08 9 53
PF13639 zf-RING_2 Ring finger domain 8.3E-08 9 52
PF13445 zf-RING_UBOX RING-type zinc-finger 2.6E-06 10 40
PF00097 zf-C3HC4 Zinc finger, C3HC4 type (RING finger) 1.8E-05 10 51

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0046872 metal ion binding Yes
GO:0003674 molecular_function No
GO:0043167 ion binding No
GO:0005488 binding No
GO:0043169 cation binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|029640
MLLLDPFSHCDICLEPYTSDESAQTPHAIPCGHVFCKTCLLNVYPTNCPLCRKPFVPDRSKRLHVERPDNSDAYR
HADYLKRLILTWGTSDGELALLWGEIENWLRLKTDDGAVALKKTLEILRKCRRNQTKKEDYHRMIKRLKDQITTG
DSANASKTEELRIQNVEFESKVQGLQRLVVRYESQMGKYERELQQLRQQLEYHAYPPNSLRDNPLPQPPVPAPYE
SRGASFNGINSNHRLASSTYPYPRHTGDVRDGNLYTNGYTLDPSSDTNISNKNMKGKEREPGPSYNLSALSSNDS
SADPTHAKYAIHSLASASDGVLPGASPRRRVVPVANSKPNFPEPSPKVEPKLVSGARPDLPTPRTPIHSSLPLTG
GMLDPPTAGRDYPDAYSFGAAYVSEYVAGHRAGYQLAEYTPGQAARVVPSQNTGAMNTTGNTYGNGYEASGERRE
TMRGLADMNALSMALSDVLSTPSMQTNEISRDGNSQVGVSDMDSVTTTGDSASTTSSLSRRTPRRHSLSYSGLHG
SAQNQQTRVTGQATDNTTSSSFGTMLNDNSNTLSRHRSLRQQPTFQSDGGQSALSLGLGLQMNHTGNTGGSMRPR
YMPPATQSVQVGIITTVPATNPAPSDQTTRDDRSVDTWGEVSNRSILSWQSRGSNILGVPLRNLASHAGGGSVPV
DENWGPIFPPQMMITATANPVSADERNGNDRVHNDGDGFRVVRESDEERTPVSRFSRTLPDASGATTTNGGGGGR
SPSHQGPPTSSDNRDRERNREQERRDRRRDRRQSQAAPTTPSHTADVAGFTQTAEYTSEQSRGHNQYRTPAQYPD
LSSSLLLQPANVTSSNLQSQTEGQSQPPTESRRSRRRLSVSTVPVESQHTDNLPNTARVYANSEAGYYTDVPSSN
NHRLPTASHHHQEPRNDVVVENDAANHNLVTSPTLFRSNASTNALGLDGLNEQQSRPLQISAPTPIVSSRSFLRS
YSHGFS*
Coding >AgabiH97|029640
ATGTTGCTTTTGGACCCCTTCAGCCACTGCGACATCTGTCTCGAGCCCTATACCTCCGACGAATCCGCTCAGACG
CCTCATGCCATTCCTTGTGGCCATGTGTTCTGTAAAACGTGCTTGCTGAATGTCTACCCTACCAATTGCCCACTA
TGCAGGAAACCATTTGTGCCCGATAGAAGCAAGAGGCTACACGTCGAGAGGCCAGATAATAGCGACGCCTACCGT
CATGCTGACTATCTAAAGCGCCTAATTCTCACATGGGGTACTTCGGACGGGGAGCTGGCGTTGCTGTGGGGAGAG
ATTGAGAATTGGCTACGTCTCAAAACAGACGATGGGGCCGTCGCTCTTAAGAAAACACTTGAAATTCTGCGTAAA
TGTCGAAGGAACCAGACGAAGAAGGAAGACTATCATAGGATGATCAAGAGACTCAAAGACCAAATCACTACGGGG
GACAGTGCGAATGCGTCAAAGACTGAAGAGCTCAGAATTCAGAATGTAGAATTCGAGAGCAAGGTCCAGGGCTTA
CAAAGACTAGTCGTCCGCTACGAGTCTCAAATGGGAAAATACGAACGTGAACTCCAGCAACTACGCCAGCAGCTC
GAGTATCACGCGTACCCGCCCAACTCTTTACGCGACAATCCTCTCCCACAGCCCCCGGTCCCCGCCCCCTATGAA
AGTCGAGGAGCTTCTTTCAACGGGATCAATTCCAACCATAGGCTAGCATCTTCAACTTATCCATACCCAAGGCAT
ACCGGCGATGTGAGAGATGGGAACCTTTATACCAATGGATATACCCTGGATCCTTCCTCTGATACCAATATATCG
AACAAAAACATGAAGGGTAAAGAACGTGAACCCGGACCTTCATATAATCTCTCCGCTTTATCATCCAACGACTCC
TCGGCGGATCCGACACACGCCAAATATGCCATTCATAGCCTTGCCTCTGCCTCAGATGGAGTCCTTCCAGGCGCT
TCACCTCGCAGACGGGTTGTACCCGTTGCCAACTCGAAGCCCAATTTCCCCGAACCTTCACCGAAAGTCGAACCA
AAATTGGTATCGGGCGCTCGTCCAGACCTTCCTACGCCACGCACTCCTATTCATTCCTCATTACCATTGACTGGT
GGAATGTTAGATCCTCCAACCGCGGGTCGAGATTATCCGGACGCTTATTCTTTTGGAGCCGCGTACGTTTCGGAA
TACGTCGCAGGGCATAGGGCTGGATATCAATTGGCTGAATATACGCCTGGTCAAGCTGCCAGGGTTGTTCCATCC
CAAAACACGGGGGCTATGAATACCACTGGTAATACGTATGGGAACGGCTATGAAGCGAGTGGAGAAAGGAGAGAG
ACGATGAGGGGTTTGGCTGATATGAATGCCTTGTCAATGGCATTGTCTGACGTATTGTCAACACCATCCATGCAG
ACTAATGAAATAAGTCGGGATGGTAATTCTCAAGTGGGCGTTTCGGATATGGATTCCGTTACTACAACAGGCGAC
TCGGCGTCTACGACATCAAGCCTCTCCAGAAGAACTCCACGGCGCCATTCTCTATCCTACTCTGGCTTACATGGC
TCTGCTCAAAACCAACAAACGCGAGTGACTGGCCAAGCAACGGATAACACCACGTCGTCGTCTTTCGGCACCATG
CTTAACGATAATAGTAATACGCTTTCCAGGCATCGCAGTTTGAGACAGCAACCTACATTCCAAAGTGATGGAGGT
CAGAGTGCCCTATCGTTGGGACTGGGACTTCAAATGAATCACACGGGGAATACTGGTGGTAGTATGAGGCCGCGA
TATATGCCTCCCGCCACCCAGTCAGTTCAAGTCGGCATCATCACAACCGTTCCTGCCACCAATCCAGCACCCTCG
GATCAAACAACACGTGATGATCGTTCCGTGGACACTTGGGGTGAAGTCTCCAATCGTTCCATACTTAGTTGGCAA
AGTCGTGGATCGAACATATTAGGTGTACCGTTGAGAAATCTTGCTTCTCATGCTGGCGGTGGTTCGGTTCCTGTT
GATGAAAACTGGGGTCCAATTTTTCCTCCTCAGATGATGATCACCGCTACGGCTAACCCAGTTAGCGCGGATGAA
AGGAACGGAAATGATCGTGTTCATAACGATGGTGACGGTTTCCGCGTTGTAAGAGAGAGTGATGAAGAAAGAACA
CCTGTGAGCCGGTTTTCGAGGACACTACCTGATGCATCGGGTGCGACAACTACAAACGGAGGTGGCGGTGGACGT
TCTCCGTCGCATCAGGGCCCACCAACATCCTCTGATAACCGCGACAGGGAAAGAAATCGTGAACAGGAGCGTAGA
GATAGAAGGAGGGATAGAAGACAATCGCAAGCCGCTCCAACCACACCTTCACATACCGCTGATGTCGCAGGTTTT
ACTCAAACCGCTGAATATACGTCTGAACAATCAAGAGGTCACAATCAATACAGGACTCCTGCCCAGTATCCGGAC
CTGTCATCCAGCCTTCTACTTCAACCCGCGAACGTTACTTCCTCCAATCTTCAGTCCCAAACCGAAGGACAATCC
CAACCCCCAACTGAAAGCCGTCGCTCACGCCGTAGACTCTCTGTCTCAACAGTACCCGTCGAATCTCAGCATACA
GATAATTTACCTAACACAGCACGAGTATATGCAAACTCCGAAGCGGGATACTACACTGATGTCCCTTCATCAAAT
AATCATCGTCTCCCTACGGCTTCGCATCATCATCAAGAGCCTCGCAATGACGTCGTTGTTGAGAATGATGCAGCT
AACCATAACTTGGTCACATCGCCGACGTTGTTTCGCTCCAATGCGTCTACTAATGCTTTGGGATTGGATGGATTG
AATGAACAACAGAGCAGGCCTTTACAAATTTCGGCACCAACGCCGATTGTCTCGAGTAGAAGTTTTTTGAGGTCG
TATAGTCATGGGTTTTCCTGA
Transcript >AgabiH97|029640
ATGTTGCTTTTGGACCCCTTCAGCCACTGCGACATCTGTCTCGAGCCCTATACCTCCGACGAATCCGCTCAGACG
CCTCATGCCATTCCTTGTGGCCATGTGTTCTGTAAAACGTGCTTGCTGAATGTCTACCCTACCAATTGCCCACTA
TGCAGGAAACCATTTGTGCCCGATAGAAGCAAGAGGCTACACGTCGAGAGGCCAGATAATAGCGACGCCTACCGT
CATGCTGACTATCTAAAGCGCCTAATTCTCACATGGGGTACTTCGGACGGGGAGCTGGCGTTGCTGTGGGGAGAG
ATTGAGAATTGGCTACGTCTCAAAACAGACGATGGGGCCGTCGCTCTTAAGAAAACACTTGAAATTCTGCGTAAA
TGTCGAAGGAACCAGACGAAGAAGGAAGACTATCATAGGATGATCAAGAGACTCAAAGACCAAATCACTACGGGG
GACAGTGCGAATGCGTCAAAGACTGAAGAGCTCAGAATTCAGAATGTAGAATTCGAGAGCAAGGTCCAGGGCTTA
CAAAGACTAGTCGTCCGCTACGAGTCTCAAATGGGAAAATACGAACGTGAACTCCAGCAACTACGCCAGCAGCTC
GAGTATCACGCGTACCCGCCCAACTCTTTACGCGACAATCCTCTCCCACAGCCCCCGGTCCCCGCCCCCTATGAA
AGTCGAGGAGCTTCTTTCAACGGGATCAATTCCAACCATAGGCTAGCATCTTCAACTTATCCATACCCAAGGCAT
ACCGGCGATGTGAGAGATGGGAACCTTTATACCAATGGATATACCCTGGATCCTTCCTCTGATACCAATATATCG
AACAAAAACATGAAGGGTAAAGAACGTGAACCCGGACCTTCATATAATCTCTCCGCTTTATCATCCAACGACTCC
TCGGCGGATCCGACACACGCCAAATATGCCATTCATAGCCTTGCCTCTGCCTCAGATGGAGTCCTTCCAGGCGCT
TCACCTCGCAGACGGGTTGTACCCGTTGCCAACTCGAAGCCCAATTTCCCCGAACCTTCACCGAAAGTCGAACCA
AAATTGGTATCGGGCGCTCGTCCAGACCTTCCTACGCCACGCACTCCTATTCATTCCTCATTACCATTGACTGGT
GGAATGTTAGATCCTCCAACCGCGGGTCGAGATTATCCGGACGCTTATTCTTTTGGAGCCGCGTACGTTTCGGAA
TACGTCGCAGGGCATAGGGCTGGATATCAATTGGCTGAATATACGCCTGGTCAAGCTGCCAGGGTTGTTCCATCC
CAAAACACGGGGGCTATGAATACCACTGGTAATACGTATGGGAACGGCTATGAAGCGAGTGGAGAAAGGAGAGAG
ACGATGAGGGGTTTGGCTGATATGAATGCCTTGTCAATGGCATTGTCTGACGTATTGTCAACACCATCCATGCAG
ACTAATGAAATAAGTCGGGATGGTAATTCTCAAGTGGGCGTTTCGGATATGGATTCCGTTACTACAACAGGCGAC
TCGGCGTCTACGACATCAAGCCTCTCCAGAAGAACTCCACGGCGCCATTCTCTATCCTACTCTGGCTTACATGGC
TCTGCTCAAAACCAACAAACGCGAGTGACTGGCCAAGCAACGGATAACACCACGTCGTCGTCTTTCGGCACCATG
CTTAACGATAATAGTAATACGCTTTCCAGGCATCGCAGTTTGAGACAGCAACCTACATTCCAAAGTGATGGAGGT
CAGAGTGCCCTATCGTTGGGACTGGGACTTCAAATGAATCACACGGGGAATACTGGTGGTAGTATGAGGCCGCGA
TATATGCCTCCCGCCACCCAGTCAGTTCAAGTCGGCATCATCACAACCGTTCCTGCCACCAATCCAGCACCCTCG
GATCAAACAACACGTGATGATCGTTCCGTGGACACTTGGGGTGAAGTCTCCAATCGTTCCATACTTAGTTGGCAA
AGTCGTGGATCGAACATATTAGGTGTACCGTTGAGAAATCTTGCTTCTCATGCTGGCGGTGGTTCGGTTCCTGTT
GATGAAAACTGGGGTCCAATTTTTCCTCCTCAGATGATGATCACCGCTACGGCTAACCCAGTTAGCGCGGATGAA
AGGAACGGAAATGATCGTGTTCATAACGATGGTGACGGTTTCCGCGTTGTAAGAGAGAGTGATGAAGAAAGAACA
CCTGTGAGCCGGTTTTCGAGGACACTACCTGATGCATCGGGTGCGACAACTACAAACGGAGGTGGCGGTGGACGT
TCTCCGTCGCATCAGGGCCCACCAACATCCTCTGATAACCGCGACAGGGAAAGAAATCGTGAACAGGAGCGTAGA
GATAGAAGGAGGGATAGAAGACAATCGCAAGCCGCTCCAACCACACCTTCACATACCGCTGATGTCGCAGGTTTT
ACTCAAACCGCTGAATATACGTCTGAACAATCAAGAGGTCACAATCAATACAGGACTCCTGCCCAGTATCCGGAC
CTGTCATCCAGCCTTCTACTTCAACCCGCGAACGTTACTTCCTCCAATCTTCAGTCCCAAACCGAAGGACAATCC
CAACCCCCAACTGAAAGCCGTCGCTCACGCCGTAGACTCTCTGTCTCAACAGTACCCGTCGAATCTCAGCATACA
GATAATTTACCTAACACAGCACGAGTATATGCAAACTCCGAAGCGGGATACTACACTGATGTCCCTTCATCAAAT
AATCATCGTCTCCCTACGGCTTCGCATCATCATCAAGAGCCTCGCAATGACGTCGTTGTTGAGAATGATGCAGCT
AACCATAACTTGGTCACATCGCCGACGTTGTTTCGCTCCAATGCGTCTACTAATGCTTTGGGATTGGATGGATTG
AATGAACAACAGAGCAGGCCTTTACAAATTTCGGCACCAACGCCGATTGTCTCGAGTAGAAGTTTTTTGAGGTCG
TATAGTCATGGGTTTTCCTGA
Gene >AgabiH97|029640
ATGTTGCTTTTGGACCCCTTCAGCCACTGCGACATCTGTCTCGAGCCCTATACCTCCGACGAATCCGCTCAGACG
CCTCATGCCATTCCTTGTGGCCATGTGTTCTGTAAAACGTAAGTCGGTAGCCATGCAATCATCGTGGCCTTGCTG
ACCTTGGAGTATCGAAGGTGCTTGCTGAATGTCTACCCTACCAATTGCCCACTATGCAGGAAACCATTTGTGCCC
GATAGAAGCAAGAGGCTACACGTCGAGAGGCCAGATAATAGCGACGCCTACCGTCATGCTGACTATCTAAAGCGC
CTAATTCTCACATGGGGTACTTCGGACGGGGAGCTGGCGTTGCTGTGGGGAGAGATTGAGAATTGGCTACGTCTC
AAAACAGACGATGGGGTGCATGTCGAGTCGTCGTCCCTCTCTTTTCCTTTCTACTGACCCTTTTTTCCAATTTAG
GCCGTCGCTCTTAAGAAAACACTTGAAATTCTGCGTAAATGTCGAAGGAACCAGACGAAGAAGGAAGACTATCAT
AGGATGATCAAGAGACTCAAAGACCAAATCACTACGGGGGACAGTGCGAATGCGTCAAAGACTGAAGAGCTCAGA
ATTCAGAATGTAGAATTCGAGAGCAAGGTCCAGGGCTTACAAAGGTATCAGAAATAGTTATTCTCTCTTTCAGTT
CGTCGGTTGACGTTGCTGTCCTTTTCAGACTAGTGGGTCTGCACTATTGTCATATATTGAGGATCTCCTGACACG
AGTAATGACAGGTCGTCCGCTACGAGTCTCAAATGGGAAAATACGAACGTGAACTCCAGCAACTACGCCAGCAGC
TCGAGTATCACGCGTACCCGCCCAACTCTTTACGCGACAATCCTCTCCCACAGCCCCCGGTCCCCGCCCCCTATG
AAAGTCGAGGAGCTTCTTTCAACGGGATCAATTCCAACCATAGGCTAGCATCTTCAACTTATCCATACCCAAGGC
ATACCGGCGATGTGAGAGATGGGAACCTTTATACCAATGGATATACCCTGGATCCTTCCTCTGATACCAATATAT
CGAACAAAAACATGAAGGGTAAAGAACGTGAACCCGGACCTTCATATAATCTCTCCGCTTTATCATCCAACGACT
CCTCGGCGGATCCGACACACGCCAAATATGCCATTCATAGCCTTGCCTCTGCCTCAGATGGAGTCCTTCCAGGCG
CTTCACCTCGCAGACGGGTTGTACCCGTTGCCAACTCGAAGCCCAATTTCCCCGAACCTTCACCGAAAGTCGAAC
CAAAATTGGTATCGGGCGCTCGTCCAGACCTTCCTACGCCACGCACTCCTATTCATTCCTCATTACCATTGACTG
GTGGAATGTTAGATCCTCCAACCGCGGGTCGAGATTATCCGGACGCTTATTCTTTTGGAGCCGCGTACGTTTCGG
AATACGTCGCAGGGCATAGGGCTGGATATCAATTGGCTGAATATACGCCTGGTCAAGCTGCCAGGGTTGTTCCAT
CCCAAAACACGGGGGCTATGAATACCACTGGTAATACGTATGGGAACGGCTATGAAGCGAGTGGAGAAAGGAGAG
AGACGATGAGGGGTTTGGCTGATATGAATGCCTTGTCAATGGCATTGTCTGACGTATTGTCAACACCATCCATGC
AGACTAATGAAATAAGTCGGGATGGTAATTCTCAAGTGGGCGTTTCGGATATGGATTCCGTTACTACAACAGGCG
ACTCGGCGTCTACGACATCAAGCCTCTCCAGAAGAACTCCACGGCGCCATTCTCTATCCTACTCTGGCTTACATG
GCTCTGCTCAAAACCAACAAACGCGAGTGACTGGCCAAGCAACGGATAACACCACGTCGTCGTCTTTCGGCACCA
TGCTTAACGATAATAGTAATACGCTTTCCAGGCATCGCAGTTTGAGACAGCAACCTACATTCCAAAGTGATGGAG
GTCAGAGTGCCCTATCGTTGGGACTGGGACTTCAAATGAATCACACGGGGAATACTGGTGGTAGTATGAGGCCGC
GATATATGCCTCCCGCCACCCAGTCAGTTCAAGTCGGCATCATCACAACCGTTCCTGCCACCAATCCAGCACCCT
CGGATCAAACAACACGTGATGATCGTTCCGTGGACACTTGGGGTGAAGTCTCCAATCGTTCCATACTTAGTTGGC
AAAGTCGTGGATCGAACATATTAGGTGTACCGTTGAGAAATCTTGCTTCTCATGCTGGCGGTGGTTCGGTTCCTG
TTGATGAAAACTGGGGTCCAATTTTTCCTCCTCAGATGATGATCACCGCTACGGCTAACCCAGTTAGCGCGGATG
AAAGGAACGGAAATGATCGTGTTCATAACGATGGTGACGGTTTCCGCGTTGTAAGAGAGAGTGATGAAGAAAGAA
CACCTGTGAGCCGGTTTTCGAGGACACTACCTGATGCATCGGGTGCGACAACTACAAACGGAGGTGGCGGTGGAC
GTTCTCCGTCGCATCAGGGCCCACCAACATCCTCTGATAACCGCGACAGGGAAAGAAATCGTGAACAGGAGCGTA
GAGATAGAAGGAGGGATAGAAGACAATCGCAAGCCGCTCCAACCACACCTTCACATACCGCTGATGTCGCAGGTT
TTACTCAAACCGCTGAATATACGTCTGAACAATCAAGAGGTCACAATCAATACAGGACTCCTGCCCAGTATCCGG
ACCTGTCATCCAGCCTTCTACTTCAACCCGCGAACGTTACTTCCTCCAATCTTCAGTCCCAAACCGAAGGACAAT
CCCAACCCCCAACTGAAAGCCGTCGCTCACGCCGTAGACTCTCTGTCTCAACAGTACCCGTCGAATCTCAGCATA
CAGATAATTTACCTAACACAGCACGAGTATATGCAAACTCCGAAGCGGGATACTACACTGATGTCCCTTCATCAA
ATAATCATCGTCTCCCTACGGCTTCGCATCATCATCAAGAGCCTCGCAATGACGTCGTTGTTGAGAATGATGCAG
CTAACCATAACTTGGTCACATCGCCGACGTTGTTTCGCTCCAATGCGTCTACTAATGCTTTGGGATTGGATGGAT
TGAATGAACAACAGAGCAGGCCTTTACAAATTTCGGCACCAACGCCGATTGTCTCGAGTAGAAGTTTTTTGAGGT
CGTATAGTCATGGGTTTTCCTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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