Protein ID | AgabiH97|029640 |
Gene name | |
Location | scaffold_12:403985..407158 |
Strand | - |
Gene length (bp) | 3173 |
Transcript length (bp) | 2946 |
Coding sequence length (bp) | 2946 |
Protein length (aa) | 982 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF14634 | zf-RING_5 | zinc-RING finger domain | 2.5E-08 | 9 | 53 |
PF13639 | zf-RING_2 | Ring finger domain | 8.3E-08 | 9 | 52 |
PF13445 | zf-RING_UBOX | RING-type zinc-finger | 2.6E-06 | 10 | 40 |
PF00097 | zf-C3HC4 | Zinc finger, C3HC4 type (RING finger) | 1.8E-05 | 10 | 51 |
GO Term | Description | Terminal node |
---|---|---|
GO:0046872 | metal ion binding | Yes |
GO:0003674 | molecular_function | No |
GO:0043167 | ion binding | No |
GO:0005488 | binding | No |
GO:0043169 | cation binding | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 11 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|029640 MLLLDPFSHCDICLEPYTSDESAQTPHAIPCGHVFCKTCLLNVYPTNCPLCRKPFVPDRSKRLHVERPDNSDAYR HADYLKRLILTWGTSDGELALLWGEIENWLRLKTDDGAVALKKTLEILRKCRRNQTKKEDYHRMIKRLKDQITTG DSANASKTEELRIQNVEFESKVQGLQRLVVRYESQMGKYERELQQLRQQLEYHAYPPNSLRDNPLPQPPVPAPYE SRGASFNGINSNHRLASSTYPYPRHTGDVRDGNLYTNGYTLDPSSDTNISNKNMKGKEREPGPSYNLSALSSNDS SADPTHAKYAIHSLASASDGVLPGASPRRRVVPVANSKPNFPEPSPKVEPKLVSGARPDLPTPRTPIHSSLPLTG GMLDPPTAGRDYPDAYSFGAAYVSEYVAGHRAGYQLAEYTPGQAARVVPSQNTGAMNTTGNTYGNGYEASGERRE TMRGLADMNALSMALSDVLSTPSMQTNEISRDGNSQVGVSDMDSVTTTGDSASTTSSLSRRTPRRHSLSYSGLHG SAQNQQTRVTGQATDNTTSSSFGTMLNDNSNTLSRHRSLRQQPTFQSDGGQSALSLGLGLQMNHTGNTGGSMRPR YMPPATQSVQVGIITTVPATNPAPSDQTTRDDRSVDTWGEVSNRSILSWQSRGSNILGVPLRNLASHAGGGSVPV DENWGPIFPPQMMITATANPVSADERNGNDRVHNDGDGFRVVRESDEERTPVSRFSRTLPDASGATTTNGGGGGR SPSHQGPPTSSDNRDRERNREQERRDRRRDRRQSQAAPTTPSHTADVAGFTQTAEYTSEQSRGHNQYRTPAQYPD LSSSLLLQPANVTSSNLQSQTEGQSQPPTESRRSRRRLSVSTVPVESQHTDNLPNTARVYANSEAGYYTDVPSSN NHRLPTASHHHQEPRNDVVVENDAANHNLVTSPTLFRSNASTNALGLDGLNEQQSRPLQISAPTPIVSSRSFLRS YSHGFS* |
Coding | >AgabiH97|029640 ATGTTGCTTTTGGACCCCTTCAGCCACTGCGACATCTGTCTCGAGCCCTATACCTCCGACGAATCCGCTCAGACG CCTCATGCCATTCCTTGTGGCCATGTGTTCTGTAAAACGTGCTTGCTGAATGTCTACCCTACCAATTGCCCACTA TGCAGGAAACCATTTGTGCCCGATAGAAGCAAGAGGCTACACGTCGAGAGGCCAGATAATAGCGACGCCTACCGT CATGCTGACTATCTAAAGCGCCTAATTCTCACATGGGGTACTTCGGACGGGGAGCTGGCGTTGCTGTGGGGAGAG ATTGAGAATTGGCTACGTCTCAAAACAGACGATGGGGCCGTCGCTCTTAAGAAAACACTTGAAATTCTGCGTAAA TGTCGAAGGAACCAGACGAAGAAGGAAGACTATCATAGGATGATCAAGAGACTCAAAGACCAAATCACTACGGGG GACAGTGCGAATGCGTCAAAGACTGAAGAGCTCAGAATTCAGAATGTAGAATTCGAGAGCAAGGTCCAGGGCTTA CAAAGACTAGTCGTCCGCTACGAGTCTCAAATGGGAAAATACGAACGTGAACTCCAGCAACTACGCCAGCAGCTC GAGTATCACGCGTACCCGCCCAACTCTTTACGCGACAATCCTCTCCCACAGCCCCCGGTCCCCGCCCCCTATGAA AGTCGAGGAGCTTCTTTCAACGGGATCAATTCCAACCATAGGCTAGCATCTTCAACTTATCCATACCCAAGGCAT ACCGGCGATGTGAGAGATGGGAACCTTTATACCAATGGATATACCCTGGATCCTTCCTCTGATACCAATATATCG AACAAAAACATGAAGGGTAAAGAACGTGAACCCGGACCTTCATATAATCTCTCCGCTTTATCATCCAACGACTCC TCGGCGGATCCGACACACGCCAAATATGCCATTCATAGCCTTGCCTCTGCCTCAGATGGAGTCCTTCCAGGCGCT TCACCTCGCAGACGGGTTGTACCCGTTGCCAACTCGAAGCCCAATTTCCCCGAACCTTCACCGAAAGTCGAACCA AAATTGGTATCGGGCGCTCGTCCAGACCTTCCTACGCCACGCACTCCTATTCATTCCTCATTACCATTGACTGGT GGAATGTTAGATCCTCCAACCGCGGGTCGAGATTATCCGGACGCTTATTCTTTTGGAGCCGCGTACGTTTCGGAA TACGTCGCAGGGCATAGGGCTGGATATCAATTGGCTGAATATACGCCTGGTCAAGCTGCCAGGGTTGTTCCATCC CAAAACACGGGGGCTATGAATACCACTGGTAATACGTATGGGAACGGCTATGAAGCGAGTGGAGAAAGGAGAGAG ACGATGAGGGGTTTGGCTGATATGAATGCCTTGTCAATGGCATTGTCTGACGTATTGTCAACACCATCCATGCAG ACTAATGAAATAAGTCGGGATGGTAATTCTCAAGTGGGCGTTTCGGATATGGATTCCGTTACTACAACAGGCGAC TCGGCGTCTACGACATCAAGCCTCTCCAGAAGAACTCCACGGCGCCATTCTCTATCCTACTCTGGCTTACATGGC TCTGCTCAAAACCAACAAACGCGAGTGACTGGCCAAGCAACGGATAACACCACGTCGTCGTCTTTCGGCACCATG CTTAACGATAATAGTAATACGCTTTCCAGGCATCGCAGTTTGAGACAGCAACCTACATTCCAAAGTGATGGAGGT CAGAGTGCCCTATCGTTGGGACTGGGACTTCAAATGAATCACACGGGGAATACTGGTGGTAGTATGAGGCCGCGA TATATGCCTCCCGCCACCCAGTCAGTTCAAGTCGGCATCATCACAACCGTTCCTGCCACCAATCCAGCACCCTCG GATCAAACAACACGTGATGATCGTTCCGTGGACACTTGGGGTGAAGTCTCCAATCGTTCCATACTTAGTTGGCAA AGTCGTGGATCGAACATATTAGGTGTACCGTTGAGAAATCTTGCTTCTCATGCTGGCGGTGGTTCGGTTCCTGTT GATGAAAACTGGGGTCCAATTTTTCCTCCTCAGATGATGATCACCGCTACGGCTAACCCAGTTAGCGCGGATGAA AGGAACGGAAATGATCGTGTTCATAACGATGGTGACGGTTTCCGCGTTGTAAGAGAGAGTGATGAAGAAAGAACA CCTGTGAGCCGGTTTTCGAGGACACTACCTGATGCATCGGGTGCGACAACTACAAACGGAGGTGGCGGTGGACGT TCTCCGTCGCATCAGGGCCCACCAACATCCTCTGATAACCGCGACAGGGAAAGAAATCGTGAACAGGAGCGTAGA GATAGAAGGAGGGATAGAAGACAATCGCAAGCCGCTCCAACCACACCTTCACATACCGCTGATGTCGCAGGTTTT ACTCAAACCGCTGAATATACGTCTGAACAATCAAGAGGTCACAATCAATACAGGACTCCTGCCCAGTATCCGGAC CTGTCATCCAGCCTTCTACTTCAACCCGCGAACGTTACTTCCTCCAATCTTCAGTCCCAAACCGAAGGACAATCC CAACCCCCAACTGAAAGCCGTCGCTCACGCCGTAGACTCTCTGTCTCAACAGTACCCGTCGAATCTCAGCATACA GATAATTTACCTAACACAGCACGAGTATATGCAAACTCCGAAGCGGGATACTACACTGATGTCCCTTCATCAAAT AATCATCGTCTCCCTACGGCTTCGCATCATCATCAAGAGCCTCGCAATGACGTCGTTGTTGAGAATGATGCAGCT AACCATAACTTGGTCACATCGCCGACGTTGTTTCGCTCCAATGCGTCTACTAATGCTTTGGGATTGGATGGATTG AATGAACAACAGAGCAGGCCTTTACAAATTTCGGCACCAACGCCGATTGTCTCGAGTAGAAGTTTTTTGAGGTCG TATAGTCATGGGTTTTCCTGA |
Transcript | >AgabiH97|029640 ATGTTGCTTTTGGACCCCTTCAGCCACTGCGACATCTGTCTCGAGCCCTATACCTCCGACGAATCCGCTCAGACG CCTCATGCCATTCCTTGTGGCCATGTGTTCTGTAAAACGTGCTTGCTGAATGTCTACCCTACCAATTGCCCACTA TGCAGGAAACCATTTGTGCCCGATAGAAGCAAGAGGCTACACGTCGAGAGGCCAGATAATAGCGACGCCTACCGT CATGCTGACTATCTAAAGCGCCTAATTCTCACATGGGGTACTTCGGACGGGGAGCTGGCGTTGCTGTGGGGAGAG ATTGAGAATTGGCTACGTCTCAAAACAGACGATGGGGCCGTCGCTCTTAAGAAAACACTTGAAATTCTGCGTAAA TGTCGAAGGAACCAGACGAAGAAGGAAGACTATCATAGGATGATCAAGAGACTCAAAGACCAAATCACTACGGGG GACAGTGCGAATGCGTCAAAGACTGAAGAGCTCAGAATTCAGAATGTAGAATTCGAGAGCAAGGTCCAGGGCTTA CAAAGACTAGTCGTCCGCTACGAGTCTCAAATGGGAAAATACGAACGTGAACTCCAGCAACTACGCCAGCAGCTC GAGTATCACGCGTACCCGCCCAACTCTTTACGCGACAATCCTCTCCCACAGCCCCCGGTCCCCGCCCCCTATGAA AGTCGAGGAGCTTCTTTCAACGGGATCAATTCCAACCATAGGCTAGCATCTTCAACTTATCCATACCCAAGGCAT ACCGGCGATGTGAGAGATGGGAACCTTTATACCAATGGATATACCCTGGATCCTTCCTCTGATACCAATATATCG AACAAAAACATGAAGGGTAAAGAACGTGAACCCGGACCTTCATATAATCTCTCCGCTTTATCATCCAACGACTCC TCGGCGGATCCGACACACGCCAAATATGCCATTCATAGCCTTGCCTCTGCCTCAGATGGAGTCCTTCCAGGCGCT TCACCTCGCAGACGGGTTGTACCCGTTGCCAACTCGAAGCCCAATTTCCCCGAACCTTCACCGAAAGTCGAACCA AAATTGGTATCGGGCGCTCGTCCAGACCTTCCTACGCCACGCACTCCTATTCATTCCTCATTACCATTGACTGGT GGAATGTTAGATCCTCCAACCGCGGGTCGAGATTATCCGGACGCTTATTCTTTTGGAGCCGCGTACGTTTCGGAA TACGTCGCAGGGCATAGGGCTGGATATCAATTGGCTGAATATACGCCTGGTCAAGCTGCCAGGGTTGTTCCATCC CAAAACACGGGGGCTATGAATACCACTGGTAATACGTATGGGAACGGCTATGAAGCGAGTGGAGAAAGGAGAGAG ACGATGAGGGGTTTGGCTGATATGAATGCCTTGTCAATGGCATTGTCTGACGTATTGTCAACACCATCCATGCAG ACTAATGAAATAAGTCGGGATGGTAATTCTCAAGTGGGCGTTTCGGATATGGATTCCGTTACTACAACAGGCGAC TCGGCGTCTACGACATCAAGCCTCTCCAGAAGAACTCCACGGCGCCATTCTCTATCCTACTCTGGCTTACATGGC TCTGCTCAAAACCAACAAACGCGAGTGACTGGCCAAGCAACGGATAACACCACGTCGTCGTCTTTCGGCACCATG CTTAACGATAATAGTAATACGCTTTCCAGGCATCGCAGTTTGAGACAGCAACCTACATTCCAAAGTGATGGAGGT CAGAGTGCCCTATCGTTGGGACTGGGACTTCAAATGAATCACACGGGGAATACTGGTGGTAGTATGAGGCCGCGA TATATGCCTCCCGCCACCCAGTCAGTTCAAGTCGGCATCATCACAACCGTTCCTGCCACCAATCCAGCACCCTCG GATCAAACAACACGTGATGATCGTTCCGTGGACACTTGGGGTGAAGTCTCCAATCGTTCCATACTTAGTTGGCAA AGTCGTGGATCGAACATATTAGGTGTACCGTTGAGAAATCTTGCTTCTCATGCTGGCGGTGGTTCGGTTCCTGTT GATGAAAACTGGGGTCCAATTTTTCCTCCTCAGATGATGATCACCGCTACGGCTAACCCAGTTAGCGCGGATGAA AGGAACGGAAATGATCGTGTTCATAACGATGGTGACGGTTTCCGCGTTGTAAGAGAGAGTGATGAAGAAAGAACA CCTGTGAGCCGGTTTTCGAGGACACTACCTGATGCATCGGGTGCGACAACTACAAACGGAGGTGGCGGTGGACGT TCTCCGTCGCATCAGGGCCCACCAACATCCTCTGATAACCGCGACAGGGAAAGAAATCGTGAACAGGAGCGTAGA GATAGAAGGAGGGATAGAAGACAATCGCAAGCCGCTCCAACCACACCTTCACATACCGCTGATGTCGCAGGTTTT ACTCAAACCGCTGAATATACGTCTGAACAATCAAGAGGTCACAATCAATACAGGACTCCTGCCCAGTATCCGGAC CTGTCATCCAGCCTTCTACTTCAACCCGCGAACGTTACTTCCTCCAATCTTCAGTCCCAAACCGAAGGACAATCC CAACCCCCAACTGAAAGCCGTCGCTCACGCCGTAGACTCTCTGTCTCAACAGTACCCGTCGAATCTCAGCATACA GATAATTTACCTAACACAGCACGAGTATATGCAAACTCCGAAGCGGGATACTACACTGATGTCCCTTCATCAAAT AATCATCGTCTCCCTACGGCTTCGCATCATCATCAAGAGCCTCGCAATGACGTCGTTGTTGAGAATGATGCAGCT AACCATAACTTGGTCACATCGCCGACGTTGTTTCGCTCCAATGCGTCTACTAATGCTTTGGGATTGGATGGATTG AATGAACAACAGAGCAGGCCTTTACAAATTTCGGCACCAACGCCGATTGTCTCGAGTAGAAGTTTTTTGAGGTCG TATAGTCATGGGTTTTCCTGA |
Gene | >AgabiH97|029640 ATGTTGCTTTTGGACCCCTTCAGCCACTGCGACATCTGTCTCGAGCCCTATACCTCCGACGAATCCGCTCAGACG CCTCATGCCATTCCTTGTGGCCATGTGTTCTGTAAAACGTAAGTCGGTAGCCATGCAATCATCGTGGCCTTGCTG ACCTTGGAGTATCGAAGGTGCTTGCTGAATGTCTACCCTACCAATTGCCCACTATGCAGGAAACCATTTGTGCCC GATAGAAGCAAGAGGCTACACGTCGAGAGGCCAGATAATAGCGACGCCTACCGTCATGCTGACTATCTAAAGCGC CTAATTCTCACATGGGGTACTTCGGACGGGGAGCTGGCGTTGCTGTGGGGAGAGATTGAGAATTGGCTACGTCTC AAAACAGACGATGGGGTGCATGTCGAGTCGTCGTCCCTCTCTTTTCCTTTCTACTGACCCTTTTTTCCAATTTAG GCCGTCGCTCTTAAGAAAACACTTGAAATTCTGCGTAAATGTCGAAGGAACCAGACGAAGAAGGAAGACTATCAT AGGATGATCAAGAGACTCAAAGACCAAATCACTACGGGGGACAGTGCGAATGCGTCAAAGACTGAAGAGCTCAGA ATTCAGAATGTAGAATTCGAGAGCAAGGTCCAGGGCTTACAAAGGTATCAGAAATAGTTATTCTCTCTTTCAGTT CGTCGGTTGACGTTGCTGTCCTTTTCAGACTAGTGGGTCTGCACTATTGTCATATATTGAGGATCTCCTGACACG AGTAATGACAGGTCGTCCGCTACGAGTCTCAAATGGGAAAATACGAACGTGAACTCCAGCAACTACGCCAGCAGC TCGAGTATCACGCGTACCCGCCCAACTCTTTACGCGACAATCCTCTCCCACAGCCCCCGGTCCCCGCCCCCTATG AAAGTCGAGGAGCTTCTTTCAACGGGATCAATTCCAACCATAGGCTAGCATCTTCAACTTATCCATACCCAAGGC ATACCGGCGATGTGAGAGATGGGAACCTTTATACCAATGGATATACCCTGGATCCTTCCTCTGATACCAATATAT CGAACAAAAACATGAAGGGTAAAGAACGTGAACCCGGACCTTCATATAATCTCTCCGCTTTATCATCCAACGACT CCTCGGCGGATCCGACACACGCCAAATATGCCATTCATAGCCTTGCCTCTGCCTCAGATGGAGTCCTTCCAGGCG CTTCACCTCGCAGACGGGTTGTACCCGTTGCCAACTCGAAGCCCAATTTCCCCGAACCTTCACCGAAAGTCGAAC CAAAATTGGTATCGGGCGCTCGTCCAGACCTTCCTACGCCACGCACTCCTATTCATTCCTCATTACCATTGACTG GTGGAATGTTAGATCCTCCAACCGCGGGTCGAGATTATCCGGACGCTTATTCTTTTGGAGCCGCGTACGTTTCGG AATACGTCGCAGGGCATAGGGCTGGATATCAATTGGCTGAATATACGCCTGGTCAAGCTGCCAGGGTTGTTCCAT CCCAAAACACGGGGGCTATGAATACCACTGGTAATACGTATGGGAACGGCTATGAAGCGAGTGGAGAAAGGAGAG AGACGATGAGGGGTTTGGCTGATATGAATGCCTTGTCAATGGCATTGTCTGACGTATTGTCAACACCATCCATGC AGACTAATGAAATAAGTCGGGATGGTAATTCTCAAGTGGGCGTTTCGGATATGGATTCCGTTACTACAACAGGCG ACTCGGCGTCTACGACATCAAGCCTCTCCAGAAGAACTCCACGGCGCCATTCTCTATCCTACTCTGGCTTACATG GCTCTGCTCAAAACCAACAAACGCGAGTGACTGGCCAAGCAACGGATAACACCACGTCGTCGTCTTTCGGCACCA TGCTTAACGATAATAGTAATACGCTTTCCAGGCATCGCAGTTTGAGACAGCAACCTACATTCCAAAGTGATGGAG GTCAGAGTGCCCTATCGTTGGGACTGGGACTTCAAATGAATCACACGGGGAATACTGGTGGTAGTATGAGGCCGC GATATATGCCTCCCGCCACCCAGTCAGTTCAAGTCGGCATCATCACAACCGTTCCTGCCACCAATCCAGCACCCT CGGATCAAACAACACGTGATGATCGTTCCGTGGACACTTGGGGTGAAGTCTCCAATCGTTCCATACTTAGTTGGC AAAGTCGTGGATCGAACATATTAGGTGTACCGTTGAGAAATCTTGCTTCTCATGCTGGCGGTGGTTCGGTTCCTG TTGATGAAAACTGGGGTCCAATTTTTCCTCCTCAGATGATGATCACCGCTACGGCTAACCCAGTTAGCGCGGATG AAAGGAACGGAAATGATCGTGTTCATAACGATGGTGACGGTTTCCGCGTTGTAAGAGAGAGTGATGAAGAAAGAA CACCTGTGAGCCGGTTTTCGAGGACACTACCTGATGCATCGGGTGCGACAACTACAAACGGAGGTGGCGGTGGAC GTTCTCCGTCGCATCAGGGCCCACCAACATCCTCTGATAACCGCGACAGGGAAAGAAATCGTGAACAGGAGCGTA GAGATAGAAGGAGGGATAGAAGACAATCGCAAGCCGCTCCAACCACACCTTCACATACCGCTGATGTCGCAGGTT TTACTCAAACCGCTGAATATACGTCTGAACAATCAAGAGGTCACAATCAATACAGGACTCCTGCCCAGTATCCGG ACCTGTCATCCAGCCTTCTACTTCAACCCGCGAACGTTACTTCCTCCAATCTTCAGTCCCAAACCGAAGGACAAT CCCAACCCCCAACTGAAAGCCGTCGCTCACGCCGTAGACTCTCTGTCTCAACAGTACCCGTCGAATCTCAGCATA CAGATAATTTACCTAACACAGCACGAGTATATGCAAACTCCGAAGCGGGATACTACACTGATGTCCCTTCATCAA ATAATCATCGTCTCCCTACGGCTTCGCATCATCATCAAGAGCCTCGCAATGACGTCGTTGTTGAGAATGATGCAG CTAACCATAACTTGGTCACATCGCCGACGTTGTTTCGCTCCAATGCGTCTACTAATGCTTTGGGATTGGATGGAT TGAATGAACAACAGAGCAGGCCTTTACAAATTTCGGCACCAACGCCGATTGTCTCGAGTAGAAGTTTTTTGAGGT CGTATAGTCATGGGTTTTCCTGA |