Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|029430
Gene name
Location	scaffold_12:344520..345698
Strand	-
Gene length (bp)	1178
Transcript length (bp)	795
Coding sequence length (bp)	795
Protein length (aa)	265

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF07470	Glyco_hydro_88	Glycosyl Hydrolase Family 88	9.1E-29	51	233

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|O34559\|URHG2_BACSU	Unsaturated rhamnogalacturonyl hydrolase YteR OS=Bacillus subtilis (strain 168) GN=yteR PE=1 SV=1	54	233	4.0E-23

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 23	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|029430 MVFSSSSFTLLTLFIVISTVCARPQSYAIWAADSGIQRQQGNGLGGDGNPDVSYEHGEFQWGLRQLYERTGEEKY FEYIKNGVDNIVFGNGTVHGNYRLSDFSLDPVRTGPSFLYLLEKTGERKYQIAADVFKSQLDSHPRTAQGQFWHK LRYPNQGWLDGIYMGDIFYADYTKRFQPDNTTAWDDIAKQFTLMYQNALQNATAPNNLHLLYHGYDFSHQKVWAS PDRGHSPEIIQDINLSCRFYKTLYLTSEMPRILLLEFGG*
Coding	>AgabiH97\|029430 ATGGTCTTCTCATCATCAAGTTTTACACTGCTCACACTTTTCATAGTCATATCCACTGTTTGTGCTCGTCCACAG TCTTATGCCATATGGGCAGCCGACTCGGGTATACAGCGACAGCAAGGAAATGGTCTTGGTGGGGATGGGAATCCT GATGTATCTTATGAGCATGGAGAGTTTCAGTGGGGGTTGAGACAACTTTATGAAAGAACGGGGGAGGAGAAGTAT TTTGAGTATATAAAAAACGGGGTGGATAATATTGTTTTTGGGAATGGGACTGTGCATGGGAATTATAGGTTGAGC GATTTTAGTCTTGACCCGGTAAGAACCGGTCCTTCGTTCCTTTATCTTCTCGAAAAAACGGGTGAAAGGAAATAT CAAATCGCCGCGGATGTATTCAAATCCCAACTGGATTCTCATCCCCGTACGGCTCAAGGACAGTTTTGGCATAAA CTCAGATATCCGAATCAAGGTTGGCTTGATGGGATATATATGGGTGATATTTTCTATGCGGATTATACGAAACGA TTCCAACCAGATAATACTACAGCTTGGGATGATATCGCGAAACAATTCACTTTGATGTATCAAAACGCCCTTCAA AATGCTACTGCACCCAATAACCTCCATCTCTTATATCATGGATACGATTTTTCTCATCAAAAAGTATGGGCATCC CCAGATAGAGGTCATTCACCTGAAATCATCCAGGATATCAATCTATCTTGTCGATTTTACAAGACATTGTACCTC ACATCCGAGATGCCGCGGATCCTTCTACTGGAGTTTGGTGGTTAG
Transcript	>AgabiH97\|029430 ATGGTCTTCTCATCATCAAGTTTTACACTGCTCACACTTTTCATAGTCATATCCACTGTTTGTGCTCGTCCACAG TCTTATGCCATATGGGCAGCCGACTCGGGTATACAGCGACAGCAAGGAAATGGTCTTGGTGGGGATGGGAATCCT GATGTATCTTATGAGCATGGAGAGTTTCAGTGGGGGTTGAGACAACTTTATGAAAGAACGGGGGAGGAGAAGTAT TTTGAGTATATAAAAAACGGGGTGGATAATATTGTTTTTGGGAATGGGACTGTGCATGGGAATTATAGGTTGAGC GATTTTAGTCTTGACCCGGTAAGAACCGGTCCTTCGTTCCTTTATCTTCTCGAAAAAACGGGTGAAAGGAAATAT CAAATCGCCGCGGATGTATTCAAATCCCAACTGGATTCTCATCCCCGTACGGCTCAAGGACAGTTTTGGCATAAA CTCAGATATCCGAATCAAGGTTGGCTTGATGGGATATATATGGGTGATATTTTCTATGCGGATTATACGAAACGA TTCCAACCAGATAATACTACAGCTTGGGATGATATCGCGAAACAATTCACTTTGATGTATCAAAACGCCCTTCAA AATGCTACTGCACCCAATAACCTCCATCTCTTATATCATGGATACGATTTTTCTCATCAAAAAGTATGGGCATCC CCAGATAGAGGTCATTCACCTGAAATCATCCAGGATATCAATCTATCTTGTCGATTTTACAAGACATTGTACCTC ACATCCGAGATGCCGCGGATCCTTCTACTGGAGTTTGGTGGTTAG
Gene	>AgabiH97\|029430 ATGGTCTTCTCATCATCAAGTTTTACACTGCTCACACTTTTCATAGTCATATCCACTGTTTGTGCTCGTCCACAG TCTTATGCCATATGGGCAGCCGACTCGGGTATACAGCGACAGCAAGGAAATGGTCTTGGTGGGGATGGGAATCCT GATGTATCTTATGAGCATGGAGAGTTTCAGTGGGGGTTGAGACAACTTTATGAAAGAACGGGGGAGGAGAAGTAT TTTGAGTATATAAAAAACGGGGTGGATAATATTGTTTTTGGGAATGGGACTGTGCATGGGAATTATAGGTGTGTT TTTTTAGCTTGTCGGAGGAAGATTTAGTTGCTTTTTTTTTTTACTTGGTGTTTAGGTTGAGCGATTTTAGTCTTG ACCCGGTAAGGTGAGCTTGATTTATATGCGAATGTTTTTTTTTTCGAATACCGAACTCATTTGACTTATAGAACC GGTCCTTCGTTCCTTTATCTGTAAGCCATTTTCATAGCCCTTCCTATCCTTTGTATAGGGCTCAAAGTCCTTTCT CTTTCTTTTCTTTTCTTTTCTTTTGTAGTCTCGAAAAAACGGGTGAAAGGAAATATCAAATCGCCGCGGATGTAT TCAAATCCCAACTGGATTCTCATCCCCGTACGGCTCAAGGACAGTTTTGGCATAAACTCAGATATCCGAATCAAG GTGCGCATTTGGGAAGAAAGGAAAAGAAAAGGATTAACTGGCTTTTTTTTTTGATTATAGGTTGGCTTGATGGGA TATATATGGGTGATATTTTCTATGCGGATTATACGAAACGATTCCAACCAGATAATACTACAGCTTGGGGTACGA ACTTCTTTCTTTTCTTTTTACTTTTCTATTAAAGTGCGAAATAGATGATATCGCGAAACAATTCACTTTGATGTA TCAAAACGCCCTTCAAAATGCTACTGCACCCAATAACCTCCATCTCTTATATCATGGATACGATTTTTCTCATCA AAAAGTATGGGCATCCCCAGATAGAGGTCATTCACCTGAAGTTTGGGATCGCGCTTTGGGATGGTTTTCAATGGC TCTCGTCGACATTCTTGAAACATTCCCACAAGATCATCCAGGATATCAATCTATCTTGTCGATTTTACAAGACAT TGTACCTCACATCCGAGATGCCGCGGATCCTTCTACTGGAGTTTGGTGGTTAG

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