Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|029400
Gene name
Locationscaffold_12:338360..340276
Strand-
Gene length (bp)1916
Transcript length (bp)1674
Coding sequence length (bp)1674
Protein length (aa) 558

Overview

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12937 F-box-like F-box-like 1.6E-09 77 152

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm|Nucleus 0.5241 0.5633 0.2717 0.1047 0.2192 0.0628 0.1474 0.2228 0.1353 0.085

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup244
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|016410
Agaricus bisporus var bisporus H39 AgabiH39|356900
Agaricus bisporus var bisporus H39 AgabiH39|099680
Agaricus bisporus var bisporus H39 AgabiH39|096020
Agaricus bisporus var bisporus H39 AgabiH39|096000
Agaricus bisporus var bisporus H39 AgabiH39|095890
Agaricus bisporus var bisporus H39 AgabiH39|095880
Agaricus bisporus var bisporus H39 AgabiH39|095450
Agaricus bisporus var bisporus H39 AgabiH39|086600
Agaricus bisporus var bisporus H39 AgabiH39|086590
Agaricus bisporus var bisporus H39 AgabiH39|357400
Agaricus bisporus var bisporus H39 AgabiH39|086500
Agaricus bisporus var bisporus H39 AgabiH39|029400
Agaricus bisporus var bisporus H39 AgabiH39|019480
Agaricus bisporus var bisporus H39 AgabiH39|019400
Agaricus bisporus var bisporus H39 AgabiH39|019380
Agaricus bisporus var bisporus H39 AgabiH39|019370
Agaricus bisporus var bisporus H39 AgabiH39|019360
Agaricus bisporus var bisporus H39 AgabiH39|016460
Agaricus bisporus var bisporus H39 AgabiH39|016450
Agaricus bisporus var bisporus H39 AgabiH39|086550
Agaricus bisporus var bisporus H97 AgabiH97|086590
Agaricus bisporus var bisporus H97 AgabiH97|086600
Agaricus bisporus var bisporus H97 AgabiH97|086950
Agaricus bisporus var bisporus H97 AgabiH97|096000
Agaricus bisporus var bisporus H97 AgabiH97|095880
Agaricus bisporus var bisporus H97 AgabiH97|095890
Agaricus bisporus var bisporus H97 AgabiH97|086550
Agaricus bisporus var bisporus H97 AgabiH97|095450
Agaricus bisporus var bisporus H97 AgabiH97|086500
Agaricus bisporus var bisporus H97 AgabiH97|019370
Agaricus bisporus var bisporus H97 AgabiH97|019480
Agaricus bisporus var bisporus H97 AgabiH97|019400
Agaricus bisporus var bisporus H97 AgabiH97|019380
Agaricus bisporus var bisporus H97 AgabiH97|019360
Agaricus bisporus var bisporus H97 AgabiH97|016460
Agaricus bisporus var bisporus H97 AgabiH97|016450
Agaricus bisporus var bisporus H97 AgabiH97|016410
Agaricus bisporus var bisporus H97 AgabiH97|096020
Agaricus bisporus var bisporus H97 AgabiH97|029400 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|099680

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|029400
MHSTFVDCPRCGHNFVHTSGLYEPQAERATKLVALAPPERISDLQDQVRSLDELISRLNQDKANVLHRINGMRDK
TRHIPPEVLSHIFLYVRPPIDFHSHLPPRTDEWQTECQYFRRDTYHREEDHHIKLAGVSHRWRQIVLSTPQLWTT
ISVGVWAPSIKSHLTLLDLYSRHAGNFPISIELDFRFHAIRWKLEEDQRAREQSIALLKPIFEAVFTRIAPKIHH
LTLIAPPSEILSDIDQNFSLCNSLTIYTVMPPDRYQPEPELPHSLAHAAELPHLQRVFMFRFNFDFTLHWVSITV
LHLFSMPISAAFDALTKCPNLVEFKNTLAYSRVSLPERIGAEPIEHESLESMSCDDTLDLYRHFRFTSLRTLQWG
HIENNLRGPRLDIFSNLPSTLVSLTLGRISLKPGFYPHSLLQCVPQLRELRFLRSEDHVIECAICSIGRPPISGN
STTHRSVILPNLRKLSICAYMTVDSGMAVDMLEAIYSMRTGEEDFHLDVFKIEWDAEAAERRENSRQRSLEKYVA
VTIMAAAQERVPYRRQSSWIVKVAAVVYLSML*
Coding >AgabiH97|029400
ATGCATTCAACTTTCGTCGATTGTCCTCGCTGTGGCCACAACTTTGTGCATACAAGCGGGCTGTATGAGCCTCAG
GCTGAGCGCGCCACCAAGCTCGTTGCATTGGCCCCTCCGGAACGAATTTCTGATCTTCAAGATCAAGTCCGTAGT
CTTGATGAGCTGATTTCTCGACTCAATCAAGACAAGGCCAATGTGCTACACAGAATAAACGGAATGCGCGACAAG
ACGAGGCATATACCACCCGAAGTCCTATCTCACATCTTCCTGTATGTCCGTCCACCCATCGATTTTCACAGTCAC
CTCCCTCCCAGGACCGATGAATGGCAAACAGAGTGTCAATACTTCCGAAGGGACACGTATCATAGGGAAGAAGAT
CACCATATTAAACTGGCTGGTGTTTCCCACCGCTGGCGGCAGATAGTTCTCTCCACTCCTCAACTTTGGACTACC
ATTTCTGTTGGGGTTTGGGCTCCTTCGATTAAATCCCATCTTACTCTCCTCGATCTATACAGTCGACACGCGGGG
AATTTCCCAATTTCAATAGAACTGGACTTCAGATTCCATGCAATTCGGTGGAAATTGGAAGAAGATCAACGCGCA
AGGGAACAAAGTATCGCCTTGTTAAAGCCGATCTTCGAGGCAGTCTTCACCAGAATTGCGCCCAAGATACATCAC
CTCACCCTTATCGCCCCTCCTTCAGAAATTCTTTCTGATATTGACCAGAACTTCTCCCTGTGTAATTCCCTGACT
ATATACACGGTAATGCCGCCAGATAGGTACCAGCCAGAACCCGAGCTTCCACACTCGCTCGCTCACGCCGCGGAA
CTTCCCCATCTTCAACGCGTGTTTATGTTTCGTTTCAACTTCGATTTCACCCTTCACTGGGTATCGATCACGGTT
CTACACCTTTTTTCAATGCCCATTTCTGCTGCCTTCGACGCTTTGACAAAATGCCCGAACCTTGTCGAATTCAAG
AATACGCTGGCCTACTCACGTGTTTCGCTACCGGAACGAATCGGAGCCGAACCAATCGAACATGAGAGCCTGGAG
TCGATGTCATGTGATGATACACTGGATTTGTATCGTCACTTTCGGTTCACAAGCCTGCGCACCCTACAATGGGGT
CATATAGAAAATAATTTACGTGGACCTCGTCTAGACATCTTTTCCAACCTGCCATCAACCCTAGTATCTCTCACC
CTTGGTCGGATATCGCTAAAGCCGGGATTTTATCCACATTCTCTACTTCAATGTGTCCCTCAGCTTCGCGAATTG
CGCTTTTTGCGGTCTGAGGACCATGTCATTGAATGTGCTATTTGTAGTATCGGTCGGCCTCCGATCTCAGGAAAC
TCTACCACTCACAGATCAGTGATCCTGCCCAACCTTCGCAAGTTGTCTATATGTGCCTATATGACGGTTGATTCG
GGAATGGCTGTTGACATGCTGGAAGCAATATATTCTATGAGGACGGGAGAGGAAGATTTTCATCTGGACGTTTTC
AAAATTGAATGGGATGCAGAGGCTGCAGAGAGACGCGAAAATTCCAGACAGCGATCCTTGGAAAAATACGTGGCA
GTAACAATCATGGCCGCAGCTCAAGAACGTGTGCCGTATCGCCGTCAATCCTCTTGGATAGTAAAGGTCGCCGCT
GTTGTGTATCTCTCAATGCTTTGA
Transcript >AgabiH97|029400
ATGCATTCAACTTTCGTCGATTGTCCTCGCTGTGGCCACAACTTTGTGCATACAAGCGGGCTGTATGAGCCTCAG
GCTGAGCGCGCCACCAAGCTCGTTGCATTGGCCCCTCCGGAACGAATTTCTGATCTTCAAGATCAAGTCCGTAGT
CTTGATGAGCTGATTTCTCGACTCAATCAAGACAAGGCCAATGTGCTACACAGAATAAACGGAATGCGCGACAAG
ACGAGGCATATACCACCCGAAGTCCTATCTCACATCTTCCTGTATGTCCGTCCACCCATCGATTTTCACAGTCAC
CTCCCTCCCAGGACCGATGAATGGCAAACAGAGTGTCAATACTTCCGAAGGGACACGTATCATAGGGAAGAAGAT
CACCATATTAAACTGGCTGGTGTTTCCCACCGCTGGCGGCAGATAGTTCTCTCCACTCCTCAACTTTGGACTACC
ATTTCTGTTGGGGTTTGGGCTCCTTCGATTAAATCCCATCTTACTCTCCTCGATCTATACAGTCGACACGCGGGG
AATTTCCCAATTTCAATAGAACTGGACTTCAGATTCCATGCAATTCGGTGGAAATTGGAAGAAGATCAACGCGCA
AGGGAACAAAGTATCGCCTTGTTAAAGCCGATCTTCGAGGCAGTCTTCACCAGAATTGCGCCCAAGATACATCAC
CTCACCCTTATCGCCCCTCCTTCAGAAATTCTTTCTGATATTGACCAGAACTTCTCCCTGTGTAATTCCCTGACT
ATATACACGGTAATGCCGCCAGATAGGTACCAGCCAGAACCCGAGCTTCCACACTCGCTCGCTCACGCCGCGGAA
CTTCCCCATCTTCAACGCGTGTTTATGTTTCGTTTCAACTTCGATTTCACCCTTCACTGGGTATCGATCACGGTT
CTACACCTTTTTTCAATGCCCATTTCTGCTGCCTTCGACGCTTTGACAAAATGCCCGAACCTTGTCGAATTCAAG
AATACGCTGGCCTACTCACGTGTTTCGCTACCGGAACGAATCGGAGCCGAACCAATCGAACATGAGAGCCTGGAG
TCGATGTCATGTGATGATACACTGGATTTGTATCGTCACTTTCGGTTCACAAGCCTGCGCACCCTACAATGGGGT
CATATAGAAAATAATTTACGTGGACCTCGTCTAGACATCTTTTCCAACCTGCCATCAACCCTAGTATCTCTCACC
CTTGGTCGGATATCGCTAAAGCCGGGATTTTATCCACATTCTCTACTTCAATGTGTCCCTCAGCTTCGCGAATTG
CGCTTTTTGCGGTCTGAGGACCATGTCATTGAATGTGCTATTTGTAGTATCGGTCGGCCTCCGATCTCAGGAAAC
TCTACCACTCACAGATCAGTGATCCTGCCCAACCTTCGCAAGTTGTCTATATGTGCCTATATGACGGTTGATTCG
GGAATGGCTGTTGACATGCTGGAAGCAATATATTCTATGAGGACGGGAGAGGAAGATTTTCATCTGGACGTTTTC
AAAATTGAATGGGATGCAGAGGCTGCAGAGAGACGCGAAAATTCCAGACAGCGATCCTTGGAAAAATACGTGGCA
GTAACAATCATGGCCGCAGCTCAAGAACGTGTGCCGTATCGCCGTCAATCCTCTTGGATAGTAAAGGTCGCCGCT
GTTGTGTATCTCTCAATGCTTTGA
Gene >AgabiH97|029400
ATGCATTCAACTTTCGTCGATTGTCCTCGCTGTGGCCACAACTTTGTGCATACAAGCGGGCTGTATGAGCCTCAG
GCTGAGCGCGCCACCAAGCTCGTTGCATTGGCCCCTCCGGAACGAATTTCTGATCTTCAAGATCAAGTCCGTAGT
CTTGATGAGCTGATTTCTCGACTCAATCAAGACAAGGCCAATGTGCTACACAGAATAAACGGAATGCGCGACAAG
ACGAGGCATATACCACCCGAAGTCCTATCTCACATCTTCCTGTATGTCCGTCCACCCATCGATTTTCACAGTCAC
CTCCCTCCCAGGACCGATGAATGGCAAACAGAGTGTCAATACTTCCGAAGGGACACGTATCATAGGGAAGAAGAT
CACCATATTAAACTGGCTGGTGTTTCCCACCGCTGGCGGCAGATAGTTCTCTCCACTCCTCAACTTTGGACTACC
ATTTCTGTTGGGGTTTGGGCTCCTTCGATTAAATCCCATCTTACTCTCCTCGATCTATACAGTCGACACGCGGGG
AATTTCCCAATTTCAATAGAACTGGACTTCAGATTCCATGCAATTCGGTGGAAATTGGAAGAAGATCAACGCGCA
AGGGAACAAAGTATCGCCTTGTTAAAGCCGATCTTCGAGGCAGTCTTCACCAGAATTGCGCCCAAGATACATCAC
CTCACCCTTATCGCCCCTCCTTCAGAAATTCTTTCTGATATTGACCAGAACTTCTCCCTGTGTAATTCCCTGACT
ATATACACGGTAATGCCGCCAGATAGGTACCAGCCAGAACCCGAGCTTCCACACTCGCTCGCTCACGCCGCGGAA
CTTCCCCATCTTCAACGCGTGTTTATGTTTCGTTTCAACTTCGATTTCACCCTTCACTGGGTATCGATCACGGTT
CTACACCTTTTTTCAATGCCCATTTCTGCTGCCTTCGACGCTTTGACAAAATGCCCGAACCTTGTCGAATTCAAG
AATACGCTGGCCTACTCACGTGTTTCGCTACCGGAACGAATCGGAGCCGAACCAATCGAACATGAGAGCCTGGAG
TCGATGTCATGTGATGATACACTGGATTTGTATCGTCACTTTCGGTTCACAAGCCTGCGCACCCTACAATGGGGT
CATATAGAAAATAATTTACGTGGACCTCGTCTAGACATCTTTTCCAACCTGCCATCAACCCTAGTATCTCTCACC
CTTGGTCGGATATCGCTAAAGCCGGGATTTTATCCACATTCTCTACTTCAATGTGTCCCTCAGCTTCGCGAATTG
CGCTTTTTGCGGTCTGAGGACCATGTCATTGAATGTGCTATTTGTAGTATCGGTCGGCCTCCGATCTCAGGAAAC
TCTACCACTCACAGATCAGTGATCCTGCCCAACCTTCGCAAGTTGTCTATATGTGCCTATATGACGGTTGATTCG
GGAATGGCTGTTGACATGCTGGAAGCAATATATTCTATGAGGACGGGAGAGGAAGATTTTCATCTGGACGTTTTC
AAAATTGAATGGGATGCAGAGGCTGCAGAGAGGTTACAGACGCTTGTGTCTTCGGGGTTTAACATCAAAATTACG
ACAGACGCGAAAATTCCAGACAGCGATCCTTGGAAAAATACGTGGCAGTAACAATGTATGTACTCGCTCTGCTCT
TGTTAGAAGTTTAAACTAACCAGTGACTAAGCATGGCCGCAGGTATTGTTAACGAGATGAGTCATTGACCCCGTA
GATGTTTGGTATCGACATTGTGTCCTACTTGACTGTCTACTCGTTCTTCGTCGAGAAGCTCAAGAACGTGTGCCG
TATCGCCGTCAATCCTCTTGGGCGAGTTCAGGACTCATATTATCTCTTCATATGCTTAATGTCTGCTTCCCTAGA
TAGTAAAGGTCGCCGCTGTTGTGTATCTCTCAATGCTTTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail