Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|029390
Gene name
Location	scaffold_12:333071..334419
Strand	-
Gene length (bp)	1348
Transcript length (bp)	1134
Coding sequence length (bp)	1134
Protein length (aa)	378

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF01328	Peroxidase_2	Peroxidase, family 2	2.3E-46	67	281

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|B9W4V6|APO1_AGRAE	Aromatic peroxygenase OS=Agrocybe aegerita GN=APO1 PE=1 SV=1	12	376	2.0E-155
sp|B9W4V8|APO1_COPRA	Aromatic peroxygenase (Fragments) OS=Coprinellus radians GN=APO PE=1 SV=2	52	279	6.0E-84
sp|Q00668|STCC_EMENI	Putative sterigmatocystin biosynthesis peroxidase stcC OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=stcC PE=3 SV=2	69	274	5.0E-16

GO

GO Term	Description	Terminal node
GO:0004601	peroxidase activity	Yes
GO:0003674	molecular_function	No
GO:0016491	oxidoreductase activity	No
GO:0016209	antioxidant activity	No
GO:0003824	catalytic activity	No
GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	No

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
Yes	1 - 21	0.45

Transmembrane Domains

Domain #	Start	End	Length
1	7	29	22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Casing	Casing mycelium	15.26	7.78	22.73
Initials	Initials knots	26.49	14.57	38.40
Pileal_Stipeal_center	Stage I stipe center	40.89	21.71	60.07
Pileal_Stipeal_shell	Stage I stipe shell	18.75	9.86	27.65
DIF_stipe_center	Stage II stipe center	2.48	0.90	4.07
DIF_stipe_shell	Stage II stipe shell	6.38	2.87	9.89
DIF_stipe_skin	Stage II stipe skin	25.56	13.82	37.29
DIF_cap_skin	Stage II cap skin	7.05	3.22	10.89
DIF_cap_tissue	Stage II cap tissue	6.67	2.85	10.49
DIF_gill_tissue	Stage II gill tissue	12.72	6.08	19.35
YFB_stipe_center	Young fruiting body stipe center	2.12	0.75	3.49
YFB_stipe_shell	Young fruiting body stipe shell	2.01	0.69	3.33
YFB_stipe_skin	Young fruiting body stipe skin	21.34	10.51	32.17
YFB_cap_skin	Young fruiting body cap skin	2.60	0.93	4.28
YFB_cap_tissue	Young fruiting body cap tissue	2.52	0.93	4.11
YFB_gill_tissue	Young fruiting body gill tissue	6.07	2.71	9.42
YFB_veil	Young fruiting body veil	10.83	5.30	16.36

Differential expression

Label1	Label2	Q-value	Significant difference
Casing	DIF_gill_tissue	0.730504	no
Casing	YFB_stipe_center	0.000613	yes
Casing	YFB_stipe_shell	0.000613	yes
Casing	YFB_stipe_skin	0.405210	no
Casing	YFB_cap_skin	0.000613	yes
Casing	YFB_cap_tissue	0.000613	yes
Casing	YFB_gill_tissue	0.007439	yes
Casing	YFB_veil	0.389694	no
Casing	Initials	0.089641	no
Casing	Pileal_Stipeal_center	0.001140	yes
Casing	Pileal_Stipeal_shell	0.656338	no
Casing	DIF_stipe_center	0.000613	yes
Casing	DIF_stipe_shell	0.010093	yes
Casing	DIF_stipe_skin	0.125142	no
Casing	DIF_cap_skin	0.026215	yes
Casing	DIF_cap_tissue	0.014081	yes
DIF_gill_tissue	YFB_stipe_center	0.000613	yes
DIF_gill_tissue	YFB_stipe_shell	0.000613	yes
DIF_gill_tissue	YFB_stipe_skin	0.160121	no
DIF_gill_tissue	YFB_cap_skin	0.000613	yes
DIF_gill_tissue	YFB_cap_tissue	0.000613	yes
DIF_gill_tissue	YFB_gill_tissue	0.041603	yes
DIF_gill_tissue	YFB_veil	0.778305	no
YFB_stipe_center	YFB_stipe_shell	0.953385	no
YFB_stipe_center	YFB_stipe_skin	0.000613	yes
YFB_stipe_center	YFB_cap_skin	0.767889	no
YFB_stipe_center	YFB_cap_tissue	0.811782	no
YFB_stipe_center	YFB_gill_tissue	0.008791	yes
YFB_stipe_center	YFB_veil	0.000613	yes
YFB_stipe_shell	YFB_stipe_skin	0.000613	yes
YFB_stipe_shell	YFB_cap_skin	0.687700	no
YFB_stipe_shell	YFB_cap_tissue	0.736051	no
YFB_stipe_shell	YFB_gill_tissue	0.004928	yes
YFB_stipe_shell	YFB_veil	0.000613	yes
YFB_stipe_skin	YFB_cap_skin	0.000613	yes
YFB_stipe_skin	YFB_cap_tissue	0.000613	yes
YFB_stipe_skin	YFB_gill_tissue	0.000613	yes
YFB_stipe_skin	YFB_veil	0.037818	yes
YFB_cap_skin	YFB_cap_tissue	0.970661	no
YFB_cap_skin	YFB_gill_tissue	0.035309	yes
YFB_cap_skin	YFB_veil	0.000613	yes
YFB_cap_tissue	YFB_gill_tissue	0.025963	yes
YFB_cap_tissue	YFB_veil	0.000613	yes
YFB_gill_tissue	YFB_veil	0.109929	no
Initials	DIF_gill_tissue	0.024444	yes
Initials	YFB_stipe_center	0.000613	yes
Initials	YFB_stipe_shell	0.000613	yes
Initials	YFB_stipe_skin	0.630417	no
Initials	YFB_cap_skin	0.000613	yes
Initials	YFB_cap_tissue	0.000613	yes
Initials	YFB_gill_tissue	0.000613	yes
Initials	YFB_veil	0.002084	yes
Initials	Pileal_Stipeal_center	0.200673	no
Initials	Pileal_Stipeal_shell	0.344495	no
Initials	DIF_stipe_center	0.000613	yes
Initials	DIF_stipe_shell	0.000613	yes
Initials	DIF_stipe_skin	0.954523	no
Initials	DIF_cap_skin	0.000613	yes
Initials	DIF_cap_tissue	0.000613	yes
Pileal_Stipeal_center	DIF_gill_tissue	0.000613	yes
Pileal_Stipeal_center	YFB_stipe_center	0.000613	yes
Pileal_Stipeal_center	YFB_stipe_shell	0.000613	yes
Pileal_Stipeal_center	YFB_stipe_skin	0.047584	yes
Pileal_Stipeal_center	YFB_cap_skin	0.000613	yes
Pileal_Stipeal_center	YFB_cap_tissue	0.000613	yes
Pileal_Stipeal_center	YFB_gill_tissue	0.000613	yes
Pileal_Stipeal_center	YFB_veil	0.000613	yes
Pileal_Stipeal_center	Pileal_Stipeal_shell	0.012274	yes
Pileal_Stipeal_center	DIF_stipe_center	0.000613	yes
Pileal_Stipeal_center	DIF_stipe_shell	0.000613	yes
Pileal_Stipeal_center	DIF_stipe_skin	0.175019	no
Pileal_Stipeal_center	DIF_cap_skin	0.000613	yes
Pileal_Stipeal_center	DIF_cap_tissue	0.000613	yes
Pileal_Stipeal_shell	DIF_gill_tissue	0.335521	no
Pileal_Stipeal_shell	YFB_stipe_center	0.000613	yes
Pileal_Stipeal_shell	YFB_stipe_shell	0.000613	yes
Pileal_Stipeal_shell	YFB_stipe_skin	0.813923	no
Pileal_Stipeal_shell	YFB_cap_skin	0.000613	yes
Pileal_Stipeal_shell	YFB_cap_tissue	0.000613	yes
Pileal_Stipeal_shell	YFB_gill_tissue	0.001625	yes
Pileal_Stipeal_shell	YFB_veil	0.106196	no
Pileal_Stipeal_shell	DIF_stipe_center	0.000613	yes
Pileal_Stipeal_shell	DIF_stipe_shell	0.000613	yes
Pileal_Stipeal_shell	DIF_stipe_skin	0.428009	no
Pileal_Stipeal_shell	DIF_cap_skin	0.003765	yes
Pileal_Stipeal_shell	DIF_cap_tissue	0.002084	yes
DIF_stipe_center	DIF_gill_tissue	0.000613	yes
DIF_stipe_center	YFB_stipe_center	0.829112	no
DIF_stipe_center	YFB_stipe_shell	0.755629	no
DIF_stipe_center	YFB_stipe_skin	0.000613	yes
DIF_stipe_center	YFB_cap_skin	0.956407	no
DIF_stipe_center	YFB_cap_tissue	0.986496	no
DIF_stipe_center	YFB_gill_tissue	0.022892	yes
DIF_stipe_center	YFB_veil	0.000613	yes
DIF_stipe_center	DIF_stipe_shell	0.016949	yes
DIF_stipe_center	DIF_stipe_skin	0.000613	yes
DIF_stipe_center	DIF_cap_skin	0.007782	yes
DIF_stipe_center	DIF_cap_tissue	0.012577	yes
DIF_stipe_shell	DIF_gill_tissue	0.062038	no
DIF_stipe_shell	YFB_stipe_center	0.004928	yes
DIF_stipe_shell	YFB_stipe_shell	0.002525	yes
DIF_stipe_shell	YFB_stipe_skin	0.000613	yes
DIF_stipe_shell	YFB_cap_skin	0.023676	yes
DIF_stipe_shell	YFB_cap_tissue	0.017226	yes
DIF_stipe_shell	YFB_gill_tissue	0.945095	no
DIF_stipe_shell	YFB_veil	0.157580	no
DIF_stipe_shell	DIF_stipe_skin	0.000613	yes
DIF_stipe_shell	DIF_cap_skin	0.879428	no
DIF_stipe_shell	DIF_cap_tissue	0.951369	no
DIF_stipe_skin	DIF_gill_tissue	0.035076	yes
DIF_stipe_skin	YFB_stipe_center	0.000613	yes
DIF_stipe_skin	YFB_stipe_shell	0.000613	yes
DIF_stipe_skin	YFB_stipe_skin	0.714310	no
DIF_stipe_skin	YFB_cap_skin	0.000613	yes
DIF_stipe_skin	YFB_cap_tissue	0.000613	yes
DIF_stipe_skin	YFB_gill_tissue	0.000613	yes
DIF_stipe_skin	YFB_veil	0.002525	yes
DIF_stipe_skin	DIF_cap_skin	0.000613	yes
DIF_stipe_skin	DIF_cap_tissue	0.000613	yes
DIF_cap_skin	DIF_gill_tissue	0.122909	no
DIF_cap_skin	YFB_stipe_center	0.002084	yes
DIF_cap_skin	YFB_stipe_shell	0.001140	yes
DIF_cap_skin	YFB_stipe_skin	0.001140	yes
DIF_cap_skin	YFB_cap_skin	0.011041	yes
DIF_cap_skin	YFB_cap_tissue	0.008791	yes
DIF_cap_skin	YFB_gill_tissue	0.808781	no
DIF_cap_skin	YFB_veil	0.287492	no
DIF_cap_skin	DIF_cap_tissue	0.940086	no
DIF_cap_tissue	DIF_gill_tissue	0.087080	no
DIF_cap_tissue	YFB_stipe_center	0.002951	yes
DIF_cap_tissue	YFB_stipe_shell	0.002084	yes
DIF_cap_tissue	YFB_stipe_skin	0.000613	yes
DIF_cap_tissue	YFB_cap_skin	0.020790	yes
DIF_cap_tissue	YFB_cap_tissue	0.015529	yes
DIF_cap_tissue	YFB_gill_tissue	0.892437	no
DIF_cap_tissue	YFB_veil	0.217648	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|029390 MARLSSFIVLAIALVSSTTAFPAYQSLGGLSQRQIDSIMPGLKAVKPKDPPPPLKDNGTKLVNDAKHPWKPLRDG DKRGPCPGLNTLASHGWLPRDGVATPQQIIAASQEGFNFESQIARRFTYSSHLIDGNLVTDLLSIGAKTDKTGPD PPAPANPGGLNLHGVIEGDASMTRGDAYWGDNWHFNETQFSELLEFMDKYGDGLYNYKVAGEFRYQRIQESIATN PEFNFTGGRFFAAYIETVVGANLFSDGRRNDSQVPADAARGFFQDSRMPDDFHRAARPFSTEGVEVVIGAHPFSP GRNVNGINTYTIDPNSPTFESDADGCAQYEMFVNEAVVPLYPNPTGVLRRNLKINLQHYFDTFGGKCKQLFPYGR DH*
Coding	>AgabiH97|029390 ATGGCTCGCCTTTCATCCTTCATTGTCCTCGCTATTGCTCTGGTTTCTTCGACCACGGCTTTCCCTGCCTATCAA TCCCTGGGAGGGCTGTCGCAAAGGCAGATAGATTCAATCATGCCTGGCCTTAAAGCAGTCAAGCCAAAGGACCCG CCACCTCCTTTGAAGGACAACGGAACTAAACTCGTCAATGATGCCAAACATCCTTGGAAGCCCCTCCGAGACGGT GATAAGCGAGGGCCTTGTCCCGGATTGAATACTCTTGCTTCGCATGGTTGGTTGCCGCGTGATGGTGTTGCAACA CCACAACAAATCATCGCTGCCTCTCAAGAAGGATTCAATTTCGAGAGTCAGATCGCAAGGAGATTTACATATTCC AGTCATCTCATTGACGGAAACCTTGTCACCGATCTGCTCAGTATTGGCGCGAAGACTGATAAGACTGGTCCTGAT CCACCTGCCCCAGCAAACCCCGGTGGCCTCAACTTACATGGAGTAATTGAAGGCGACGCCAGCATGACCCGAGGT GATGCATACTGGGGTGACAATTGGCACTTCAACGAGACCCAGTTCTCAGAGCTCCTTGAATTCATGGATAAATAC GGAGATGGACTCTACAACTACAAGGTCGCCGGTGAATTCAGATACCAGCGTATCCAAGAGTCCATTGCGACGAAC CCGGAATTTAACTTCACCGGCGGTCGCTTTTTCGCTGCATACATCGAAACGGTCGTCGGAGCCAACTTGTTCTCT GATGGACGCCGGAACGACAGTCAAGTTCCCGCCGACGCTGCACGCGGCTTTTTCCAAGACTCGCGCATGCCTGAT GACTTCCACAGAGCCGCCAGGCCGTTCAGCACAGAAGGTGTTGAAGTTGTCATTGGTGCCCACCCCTTCTCTCCG GGTCGTAACGTCAACGGAATCAACACATACACCATCGACCCCAATTCTCCCACTTTCGAGTCCGACGCGGATGGC TGTGCGCAGTATGAGATGTTTGTGAATGAGGCCGTCGTTCCTTTGTATCCCAACCCGACTGGGGTGCTAAGGAGG AATTTGAAAATCAACTTACAACACTACTTTGATACTTTTGGTGGTAAATGCAAGCAGCTATTCCCTTACGGAAGA GATCATTAG
Transcript	>AgabiH97|029390 ATGGCTCGCCTTTCATCCTTCATTGTCCTCGCTATTGCTCTGGTTTCTTCGACCACGGCTTTCCCTGCCTATCAA TCCCTGGGAGGGCTGTCGCAAAGGCAGATAGATTCAATCATGCCTGGCCTTAAAGCAGTCAAGCCAAAGGACCCG CCACCTCCTTTGAAGGACAACGGAACTAAACTCGTCAATGATGCCAAACATCCTTGGAAGCCCCTCCGAGACGGT GATAAGCGAGGGCCTTGTCCCGGATTGAATACTCTTGCTTCGCATGGTTGGTTGCCGCGTGATGGTGTTGCAACA CCACAACAAATCATCGCTGCCTCTCAAGAAGGATTCAATTTCGAGAGTCAGATCGCAAGGAGATTTACATATTCC AGTCATCTCATTGACGGAAACCTTGTCACCGATCTGCTCAGTATTGGCGCGAAGACTGATAAGACTGGTCCTGAT CCACCTGCCCCAGCAAACCCCGGTGGCCTCAACTTACATGGAGTAATTGAAGGCGACGCCAGCATGACCCGAGGT GATGCATACTGGGGTGACAATTGGCACTTCAACGAGACCCAGTTCTCAGAGCTCCTTGAATTCATGGATAAATAC GGAGATGGACTCTACAACTACAAGGTCGCCGGTGAATTCAGATACCAGCGTATCCAAGAGTCCATTGCGACGAAC CCGGAATTTAACTTCACCGGCGGTCGCTTTTTCGCTGCATACATCGAAACGGTCGTCGGAGCCAACTTGTTCTCT GATGGACGCCGGAACGACAGTCAAGTTCCCGCCGACGCTGCACGCGGCTTTTTCCAAGACTCGCGCATGCCTGAT GACTTCCACAGAGCCGCCAGGCCGTTCAGCACAGAAGGTGTTGAAGTTGTCATTGGTGCCCACCCCTTCTCTCCG GGTCGTAACGTCAACGGAATCAACACATACACCATCGACCCCAATTCTCCCACTTTCGAGTCCGACGCGGATGGC TGTGCGCAGTATGAGATGTTTGTGAATGAGGCCGTCGTTCCTTTGTATCCCAACCCGACTGGGGTGCTAAGGAGG AATTTGAAAATCAACTTACAACACTACTTTGATACTTTTGGTGGTAAATGCAAGCAGCTATTCCCTTACGGAAGA GATCATTAG
Gene	>AgabiH97|029390 ATGGCTCGCCTTTCATCCTTCATTGTCCTCGCTATTGCTCTGGTTTCTTCGACCACGGCTTTCCCTGCCTATCAA TCCCTGGGAGGGCTGTCGCAAAGGCAGATAGATTCAATCATGCCTGGCCTTAAAGCAGTCAAGCCAAAGGACCCG CCACCTCCTTTGAAGGACAACGGAACTAAACTCGTCAATGATGCCAAACATCCTTGGAAGCCCCTCCGAGACGGT GATAAGCGAGGGCCTTGTCCCGGATTGAATACTCTTGCTTCGCATGGTGTAAGCTCCAGCACTATATGAGTTAGG AATCTGACCTTGACTAAACCCATAGTGGTTGCCGCGTGATGGTGTTGCAACACCACAACAAATCATCGCTGCCTC TCAAGAAGGTGAGGATCGGTCGTTCTTCTGTACTTCAATTGCAAAATCTTACCTCGTTATAGGATTCAATTTCGA GAGTCAGATCGCAAGGAGATTTACATATTCCAGTCATCTCATTGACGGAAACCTTGTCACCGATCTGCTCAGTAT TGGCGCGAAGACTGATAAGACTGGTCCTGATCCACCTGCCCCAGCAAACCCCGGTGGCCTCAACTTACATGGAGT AATTGAAGGCGACGCCAGCATGACCCGAGGTACGTGTGAACGAGACATTTCGCAGTAAAGCTAACGTGTCTCTGA TGAACAGGTGATGCATACTGGGGTGACAATTGGCACTTCAACGAGACCCAGTTCTCAGAGGTAAATAGTCAACCC CAAGCTACAAAAGAATACCAACGACTTACCTGGGCAATAGCTCCTTGAATTCATGGATAAATACGGAGATGGACT CTACAACTACAAGGTCGCCGGTGAATTCAGATACCAGCGTATCCAAGAGTCCATTGCGACGAACCCGGAATTTAA CTTCACCGGCGGTCGCTTTTTCGCTGCATACATCGAAACGGTCGTCGGAGCCAACTTGTTCTCTGATGGACGCCG GAACGACAGTCAAGTTCCCGCCGACGCTGCACGCGGCTTTTTCCAAGACTCGCGCATGCCTGATGACTTCCACAG AGCCGCCAGGCCGTTCAGCACAGAAGGTGTTGAAGTTGTCATTGGTGCCCACCCCTTCTCTCCGGGTCGTAACGT CAACGGAATCAACACATACACCATCGACCCCAATTCTCCCACTTTCGAGTCCGACGCGGATGGCTGTGCGCAGTA TGAGATGTTTGTGAATGAGGCCGTCGTTCCTTTGTATCCCAACCCGACTGGGGTGCTAAGGAGGAATTTGAAAAT CAACTTACAACACTACTTTGATACTTTTGGTGGTAAATGCAAGCAGCTATTCCCTTACGGAAGAGATCATTAG