© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|029360 |
| Gene name | |
| Location | scaffold_12:326405..327493 |
| Strand | - |
| Gene length (bp) | 1088 |
| Transcript length (bp) | 804 |
| Coding sequence length (bp) | 804 |
| Protein length (aa) | 268 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF13085 | Fer2_3 | 2Fe-2S iron-sulfur cluster binding domain | 1.6E-32 | 39 | 143 |
| PF13534 | Fer4_17 | 4Fe-4S dicluster domain | 8.9E-11 | 179 | 252 |
| PF13183 | Fer4_8 | 4Fe-4S dicluster domain | 4.8E-07 | 177 | 250 |
| PF13237 | Fer4_10 | 4Fe-4S dicluster domain | 1.1E-06 | 179 | 248 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q70KF8|SDHB_UROFA | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Uromyces fabae GN=SDH2 PE=3 SV=1 | 20 | 266 | 9.0E-143 |
| sp|Q75CI4|SDHB_ASHGO | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SDH2 PE=3 SV=1 | 7 | 265 | 5.0E-138 |
| sp|P32420|SDHB_USTMA | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SDH2 PE=3 SV=1 | 2 | 266 | 5.0E-138 |
| sp|O42772|SDHB_ZYMTR | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Zymoseptoria tritici GN=SDH2 PE=3 SV=1 | 4 | 265 | 1.0E-132 |
| sp|Q6FWS8|SDHB_CANGA | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SDH2 PE=3 SV=1 | 27 | 267 | 5.0E-132 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q70KF8|SDHB_UROFA | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Uromyces fabae GN=SDH2 PE=3 SV=1 | 20 | 266 | 9.0E-143 |
| sp|Q75CI4|SDHB_ASHGO | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SDH2 PE=3 SV=1 | 7 | 265 | 5.0E-138 |
| sp|P32420|SDHB_USTMA | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SDH2 PE=3 SV=1 | 2 | 266 | 5.0E-138 |
| sp|O42772|SDHB_ZYMTR | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Zymoseptoria tritici GN=SDH2 PE=3 SV=1 | 4 | 265 | 1.0E-132 |
| sp|Q6FWS8|SDHB_CANGA | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SDH2 PE=3 SV=1 | 27 | 267 | 5.0E-132 |
| sp|P21801|SDHB_YEAST | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDH2 PE=1 SV=1 | 37 | 265 | 5.0E-130 |
| sp|P21911|SDHB_SCHPO | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sdh2 PE=3 SV=3 | 13 | 266 | 1.0E-128 |
| sp|P21914|SDHB_DROME | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Drosophila melanogaster GN=SdhB PE=2 SV=2 | 1 | 261 | 1.0E-124 |
| sp|B0BM36|SDHB_XENTR | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Xenopus tropicalis GN=sdhb PE=2 SV=1 | 37 | 266 | 5.0E-123 |
| sp|Q9YHT2|SDHB_CHICK | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Gallus gallus GN=SDHB PE=1 SV=1 | 37 | 266 | 8.0E-123 |
| sp|Q3B8J8|SDHB_XENLA | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Xenopus laevis GN=sdhb PE=2 SV=1 | 37 | 265 | 1.0E-122 |
| sp|A5PL98|SDHB_DANRE | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Danio rerio GN=sdhb PE=2 SV=1 | 37 | 266 | 3.0E-121 |
| sp|P21913|SDHB_RAT | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Rattus norvegicus GN=Sdhb PE=2 SV=2 | 37 | 266 | 2.0E-120 |
| sp|P21912|SDHB_HUMAN | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Homo sapiens GN=SDHB PE=1 SV=3 | 13 | 266 | 5.0E-120 |
| sp|Q9CQA3|SDHB_MOUSE | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Mus musculus GN=Sdhb PE=1 SV=1 | 37 | 266 | 8.0E-120 |
| sp|Q3T189|SDHB_BOVIN | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Bos taurus GN=SDHB PE=2 SV=1 | 37 | 266 | 1.0E-119 |
| sp|Q09545|SDHB_CAEEL | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Caenorhabditis elegans GN=sdhb-1 PE=2 SV=1 | 37 | 261 | 1.0E-118 |
| sp|Q007T0|SDHB_PIG | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Sus scrofa GN=SDHB PE=1 SV=1 | 37 | 266 | 5.0E-118 |
| sp|A8WPF0|SDHB_CAEBR | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Caenorhabditis briggsae GN=sdhb-1 PE=3 SV=2 | 37 | 261 | 2.0E-117 |
| sp|Q68XS0|SDHB_RICTY | Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington) GN=sdhB PE=3 SV=1 | 17 | 265 | 1.0E-116 |
| sp|Q8LB02|SDHB2_ARATH | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH2-2 PE=1 SV=2 | 2 | 261 | 1.0E-115 |
| sp|Q9ZEA1|SDHB_RICPR | Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia prowazekii (strain Madrid E) GN=sdhB PE=3 SV=1 | 17 | 265 | 1.0E-115 |
| sp|Q92JJ8|SDHB_RICCN | Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia conorii (strain ATCC VR-613 / Malish 7) GN=sdhB PE=3 SV=1 | 19 | 265 | 9.0E-115 |
| sp|Q1RGP3|SDHB_RICBR | Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia bellii (strain RML369-C) GN=sdhB PE=3 SV=1 | 37 | 265 | 2.0E-114 |
| sp|Q4UN71|SDHB_RICFE | Succinate dehydrogenase iron-sulfur subunit OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=sdhB PE=3 SV=1 | 37 | 265 | 4.0E-113 |
| sp|Q8LBZ7|SDHB1_ARATH | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH2-1 PE=1 SV=2 | 37 | 261 | 5.0E-113 |
| sp|P80480|SDHB_RECAM | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit OS=Reclinomonas americana GN=SDH2 PE=3 SV=1 | 39 | 261 | 2.0E-111 |
| sp|Q9FJP9|SDHB3_ARATH | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 3, mitochondrial OS=Arabidopsis thaliana GN=SDH2-3 PE=1 SV=1 | 31 | 261 | 1.0E-108 |
| sp|Q59662|SDHB_PARDE | Succinate dehydrogenase iron-sulfur subunit OS=Paracoccus denitrificans GN=sdhB PE=3 SV=1 | 37 | 261 | 3.0E-107 |
| sp|Q9S827|SDHB1_ORYSJ | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 1, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH2-1 PE=1 SV=1 | 37 | 261 | 1.0E-102 |
| sp|Q55CC2|SDHB_DICDI | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial OS=Dictyostelium discoideum GN=sdhB PE=3 SV=1 | 8 | 265 | 2.0E-102 |
| sp|P48932|SDHB_CHOCR | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit OS=Chondrus crispus GN=SDH2 PE=3 SV=1 | 36 | 267 | 5.0E-101 |
| sp|P80477|SDHB_PORPU | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit OS=Porphyra purpurea GN=SDH2 PE=3 SV=1 | 37 | 261 | 1.0E-100 |
| sp|Q6H4G3|SDHB2_ORYSJ | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH2-2 PE=1 SV=1 | 37 | 261 | 4.0E-100 |
| sp|P48933|SDHB_CYACA | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit OS=Cyanidium caldarium GN=SDH2 PE=3 SV=1 | 37 | 264 | 7.0E-95 |
| sp|Q8ZQU2|SDHB_SALTY | Succinate dehydrogenase iron-sulfur subunit OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=sdhB PE=3 SV=2 | 35 | 261 | 9.0E-83 |
| sp|P07014|SDHB_ECOLI | Succinate dehydrogenase iron-sulfur subunit OS=Escherichia coli (strain K12) GN=sdhB PE=1 SV=1 | 38 | 261 | 1.0E-82 |
| sp|P51053|SDHB_COXBU | Succinate dehydrogenase iron-sulfur subunit OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=sdhB PE=3 SV=1 | 39 | 264 | 2.0E-65 |
| sp|P9WN89|FRDB_MYCTU | Fumarate reductase iron-sulfur subunit OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=frdB PE=1 SV=1 | 39 | 266 | 8.0E-42 |
| sp|P9WN88|FRDB_MYCTO | Fumarate reductase iron-sulfur subunit OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=frdB PE=3 SV=1 | 39 | 266 | 8.0E-42 |
| sp|P44893|FRDB_HAEIN | Fumarate reductase iron-sulfur subunit OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=frdB PE=3 SV=1 | 33 | 267 | 3.0E-36 |
| sp|P0AC50|FRDB_SHIFL | Fumarate reductase iron-sulfur subunit OS=Shigella flexneri GN=frdB PE=3 SV=2 | 38 | 267 | 7.0E-33 |
| sp|P0AC47|FRDB_ECOLI | Fumarate reductase iron-sulfur subunit OS=Escherichia coli (strain K12) GN=frdB PE=1 SV=2 | 38 | 267 | 7.0E-33 |
| sp|P0AC48|FRDB_ECOL6 | Fumarate reductase iron-sulfur subunit OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=frdB PE=3 SV=2 | 38 | 267 | 7.0E-33 |
| sp|P0AC49|FRDB_ECO57 | Fumarate reductase iron-sulfur subunit OS=Escherichia coli O157:H7 GN=frdB PE=3 SV=2 | 38 | 267 | 7.0E-33 |
| sp|P20921|FRDB_PROVU | Fumarate reductase iron-sulfur subunit OS=Proteus vulgaris GN=frdB PE=3 SV=2 | 38 | 267 | 3.0E-32 |
| sp|P17596|FRDB_WOLSU | Fumarate reductase iron-sulfur subunit OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=frdB PE=1 SV=1 | 39 | 266 | 1.0E-23 |
| sp|O06914|FRDB_HELPY | Fumarate reductase iron-sulfur subunit OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=frdB PE=3 SV=2 | 40 | 261 | 9.0E-22 |
| sp|Q57557|Y092_METJA | Uncharacterized iron-sulfur protein MJ0092 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0092 PE=3 SV=1 | 41 | 261 | 2.0E-21 |
| sp|Q9ZMP1|FRDB_HELPJ | Fumarate reductase iron-sulfur subunit OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=frdB PE=3 SV=1 | 40 | 261 | 3.0E-21 |
| sp|D9PUX5|TFRB_METTM | Fumarate reductase (CoM/CoB) subunit B OS=Methanothermobacter marburgensis (strain DSM 2133 / 14651 / NBRC 100331 / OCM 82 / Marburg) GN=tfrB PE=1 SV=1 | 39 | 261 | 1.0E-20 |
| sp|Q6LYC4|Y1067_METMP | Uncharacterized iron-sulfur protein MMP1067 OS=Methanococcus maripaludis (strain S2 / LL) GN=MMP1067 PE=3 SV=1 | 66 | 252 | 1.0E-18 |
| sp|P08066|SDHB_BACSU | Succinate dehydrogenase iron-sulfur subunit OS=Bacillus subtilis (strain 168) GN=sdhB PE=3 SV=3 | 74 | 260 | 3.0E-15 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0051536 | iron-sulfur cluster binding | Yes |
| GO:0009055 | electron transfer activity | Yes |
| GO:0003674 | molecular_function | No |
| GO:0005488 | binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0051540 | metal cluster binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 30 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|029360 MLSASSRSAFTRANHLTRSFATTARAAQAVQKPVLEKEFKIYRWNPDEPSKKPTLQSYKIDLNQCGPMILDALIK IKNEMDPTLTFRRSCREGICGSCAMNIDGQNTLACLCRIDREGSKDTKVYPLPHMYVVKDLVPDLTLFYKQYKSI QPWLQNDNPPAHEHLQSIEDRKKLDGLYECILCACCSTSCPSYWWNQDEYLGPATLMQAYRWIADSRDTHGAQRK EVLQNEMSLYRCHTIFNCSRTCPKGLNPAAAIAKIKLELATD* |
| Coding | >AgabiH97|029360 ATGCTCTCCGCAAGCTCACGCTCGGCCTTCACCCGTGCCAACCACCTGACTCGCTCCTTTGCCACCACCGCTCGT GCTGCCCAGGCAGTTCAAAAGCCAGTTCTCGAGAAAGAGTTCAAGATTTACCGTTGGAATCCTGATGAACCTTCC AAGAAACCCACTCTGCAGTCTTACAAAATTGACTTGAACCAATGTGGACCTATGATTCTGGATGCACTTATCAAG ATCAAGAATGAAATGGATCCTACACTGACTTTCCGACGTTCATGTCGAGAGGGCATTTGTGGGTCATGCGCTATG AATATTGACGGCCAGAACACTCTGGCCTGTTTATGCCGCATTGACAGGGAAGGTAGCAAGGACACCAAGGTCTAC CCTCTTCCCCACATGTATGTTGTGAAGGACCTCGTACCAGACCTGACGCTGTTCTACAAACAATACAAGTCTATC CAGCCTTGGCTACAGAACGACAACCCCCCTGCACACGAGCACCTCCAGTCCATCGAAGACCGCAAGAAGTTGGAT GGTCTGTATGAGTGTATTCTCTGCGCTTGTTGCTCGACCTCTTGCCCTTCATACTGGTGGAACCAGGATGAATAT CTCGGCCCTGCGACTCTCATGCAAGCGTACAGGTGGATTGCAGATTCCCGAGACACTCATGGTGCTCAACGCAAA GAGGTTTTGCAGAATGAAATGAGCTTGTACCGATGCCACACCATCTTCAACTGCTCCCGTACTTGCCCGAAGGGT CTTAACCCCGCTGCTGCCATCGCCAAGATCAAGCTCGAGCTTGCCACTGACTAG |
| Transcript | >AgabiH97|029360 ATGCTCTCCGCAAGCTCACGCTCGGCCTTCACCCGTGCCAACCACCTGACTCGCTCCTTTGCCACCACCGCTCGT GCTGCCCAGGCAGTTCAAAAGCCAGTTCTCGAGAAAGAGTTCAAGATTTACCGTTGGAATCCTGATGAACCTTCC AAGAAACCCACTCTGCAGTCTTACAAAATTGACTTGAACCAATGTGGACCTATGATTCTGGATGCACTTATCAAG ATCAAGAATGAAATGGATCCTACACTGACTTTCCGACGTTCATGTCGAGAGGGCATTTGTGGGTCATGCGCTATG AATATTGACGGCCAGAACACTCTGGCCTGTTTATGCCGCATTGACAGGGAAGGTAGCAAGGACACCAAGGTCTAC CCTCTTCCCCACATGTATGTTGTGAAGGACCTCGTACCAGACCTGACGCTGTTCTACAAACAATACAAGTCTATC CAGCCTTGGCTACAGAACGACAACCCCCCTGCACACGAGCACCTCCAGTCCATCGAAGACCGCAAGAAGTTGGAT GGTCTGTATGAGTGTATTCTCTGCGCTTGTTGCTCGACCTCTTGCCCTTCATACTGGTGGAACCAGGATGAATAT CTCGGCCCTGCGACTCTCATGCAAGCGTACAGGTGGATTGCAGATTCCCGAGACACTCATGGTGCTCAACGCAAA GAGGTTTTGCAGAATGAAATGAGCTTGTACCGATGCCACACCATCTTCAACTGCTCCCGTACTTGCCCGAAGGGT CTTAACCCCGCTGCTGCCATCGCCAAGATCAAGCTCGAGCTTGCCACTGACTAG |
| Gene | >AgabiH97|029360 ATGCTCTCCGCAAGCTCACGCTCGGCCTTCACCCGTGCCAACCACCTGACTCGCTCCTTTGCCACCACCGCTCGT GCTGCCCAGGCAGTTCAAAAGCCAGTTCTCGAGAAAGAGTTCAAGATTTACCGTTGGGTCTGTGCTTTTCTCTTG CTTGATGCTTCTTACTCACGCGAGAATTCAAAACGCCGTGTTTTTAGAATCCTGATGAACCTTCCAAGAAACCCA CTCTGCAGTCTTACAAAATTGACTTGAACCAATGTGGACCTATGGTGAGTCTGCTGGATCTTCGCCTCCAACCTG TTTCACCCTGAGTTGTTGGTCCTAGATTCTGGATGCACTTATCAAGATCAAGAATGAAATGGATCCTACACTGAC TTTCCGACGTTCATGTCGAGAGGGCATTTGTGGGTCATGCGCTATGAATATTGACGGCCAGAACACTCTGGCCTG TTTATGCCGCATTGACAGGGAAGGTAGCAAGGACACCAAGGTCTACCCTCTTCCCCACAGTGAGTATATGCGCTT CCATTGTGCAGGACCGACAGCTTGACGACTCCTCTAGTGTATGTTGTGAAGGACCTCGTACCAGACCTGACGCTG TTCTACAAACAATACAAGTCTATCCAGCCTTGGCTACAGAACGACAACCCCCCTGCACACGAGCACCTCCAGTCC ATCGAAGACCGCAAGAAGTTGGATGGTCTGTATGAGTGTATTCTCTGCGCTTGTTGCTCGACCTCTTGCCCTTCA TACTGGTGGAACCAGGATGAATATCTCGGCCCTGCGACTCTCATGCAAGCGTACAGGTGGATTGCAGATTCCCGA GTGAGTAGTGTCGTCGAGTAGTTCGGGTTGCATGTTCCTGATTCTGGAATTCTAGGACACTCATGGTGCTCAACG CAAAGAGGTTTTGCAGAATGAAATGAGCTTGTACCGATGCCACACCATCTTCAACTGTGAGTAGTCGCGGATATT TCTTCTTCCGCTCGCCCTGACTGGATTTTGGAATAGGCTCCCGTACTTGCCCGAAGGGTCTTAACCCCGCTGCTG CCATCGCCAAGATCAAGCTCGAGCTTGCCACTGACTAG |