Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|029090
Gene name
Locationscaffold_12:274791..276033
Strand-
Gene length (bp)1242
Transcript length (bp)912
Coding sequence length (bp)912
Protein length (aa) 304

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF13391 HNH_2 HNH endonuclease 8.6E-08 85 156

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|029090
MKWLRFVTFAVCGAHGDLSTTPQGCPVNYDSISFSEIAEAYYYIPEGDYNFIDCNLINEQIISSEETQHSSRFRS
QIMERDGSVCIFTGGKASICQAAHLLPRSKGDKYIQAVFEDRRHLYDSNLEPSDLDINSVENGIFLRADLHLSFA
HGECAFLKTPNFALDVADIPGLEEGHMPTNRITLHHLEPDTSPCPVPQLDAHISQAAISPPSPLILDFMYGIAVF
QQWGKGQDIQNIIQQHFNERPKWSDGMLQAMDDVLALSMFFKGVTPESKARERQRQEEAAEEPDPNLNGPMCIVY
CFT*
Coding >AgabiH97|029090
ATGAAATGGCTTCGATTTGTTACCTTTGCCGTTTGTGGGGCCCATGGAGACCTTTCTACAACGCCTCAGGGCTGC
CCTGTCAACTATGACAGTATCTCCTTCAGCGAAATTGCTGAAGCATATTACTATATTCCCGAGGGGGATTACAAT
TTCATTGACTGTAATTTAATCAACGAGCAAATCATCTCCTCCGAGGAAACACAGCATTCTTCACGTTTCCGTTCT
CAAATCATGGAACGTGATGGGTCTGTCTGTATCTTCACAGGGGGTAAAGCTAGTATATGCCAGGCCGCACACCTG
CTCCCTAGAAGTAAGGGCGATAAGTACATTCAGGCTGTTTTCGAAGATCGCCGCCATTTATATGATTCCAACCTG
GAACCTAGCGATCTAGATATAAACTCGGTTGAAAATGGAATCTTTTTGCGAGCAGATTTGCATCTATCATTTGCT
CATGGGGAGTGTGCTTTCTTAAAGACACCCAACTTTGCCTTAGACGTTGCTGACATCCCTGGGCTTGAGGAAGGT
CACATGCCAACCAATCGCATCACGTTACATCATTTGGAGCCGGATACCAGCCCTTGTCCAGTTCCGCAACTTGAC
GCCCACATTTCCCAAGCAGCCATATCACCACCTTCGCCCCTCATTCTTGACTTCATGTATGGTATCGCTGTCTTT
CAGCAATGGGGCAAGGGACAGGACATCCAAAACATAATTCAGCAACATTTTAACGAGCGTCCGAAATGGTCAGAT
GGAATGCTTCAAGCTATGGATGATGTCTTGGCACTCTCAATGTTTTTCAAGGGAGTCACTCCTGAATCAAAGGCT
AGAGAAAGGCAAAGACAAGAGGAGGCGGCAGAGGAGCCTGATCCCAATTTAAACGGACCAATGTGTATAGTGTAT
TGTTTCACATAA
Transcript >AgabiH97|029090
ATGAAATGGCTTCGATTTGTTACCTTTGCCGTTTGTGGGGCCCATGGAGACCTTTCTACAACGCCTCAGGGCTGC
CCTGTCAACTATGACAGTATCTCCTTCAGCGAAATTGCTGAAGCATATTACTATATTCCCGAGGGGGATTACAAT
TTCATTGACTGTAATTTAATCAACGAGCAAATCATCTCCTCCGAGGAAACACAGCATTCTTCACGTTTCCGTTCT
CAAATCATGGAACGTGATGGGTCTGTCTGTATCTTCACAGGGGGTAAAGCTAGTATATGCCAGGCCGCACACCTG
CTCCCTAGAAGTAAGGGCGATAAGTACATTCAGGCTGTTTTCGAAGATCGCCGCCATTTATATGATTCCAACCTG
GAACCTAGCGATCTAGATATAAACTCGGTTGAAAATGGAATCTTTTTGCGAGCAGATTTGCATCTATCATTTGCT
CATGGGGAGTGTGCTTTCTTAAAGACACCCAACTTTGCCTTAGACGTTGCTGACATCCCTGGGCTTGAGGAAGGT
CACATGCCAACCAATCGCATCACGTTACATCATTTGGAGCCGGATACCAGCCCTTGTCCAGTTCCGCAACTTGAC
GCCCACATTTCCCAAGCAGCCATATCACCACCTTCGCCCCTCATTCTTGACTTCATGTATGGTATCGCTGTCTTT
CAGCAATGGGGCAAGGGACAGGACATCCAAAACATAATTCAGCAACATTTTAACGAGCGTCCGAAATGGTCAGAT
GGAATGCTTCAAGCTATGGATGATGTCTTGGCACTCTCAATGTTTTTCAAGGGAGTCACTCCTGAATCAAAGGCT
AGAGAAAGGCAAAGACAAGAGGAGGCGGCAGAGGAGCCTGATCCCAATTTAAACGGACCAATGTGTATAGTGTAT
TGTTTCACATAA
Gene >AgabiH97|029090
ATGAAATGGCTTCGATTTGTTACCTTTGCCGTTTGTGGGGCCCATGGAGACCTTTCTACAACGCCTCAGGGCTGC
CCTGTCAACTATGACAGTATCTCCTTCAGCGAAATTGCTGAAGCATATTACTATATTCCCGAGGGTAATATTTGG
CATTTCTAGCTCGCATGTTTGTTGTTTTACCAATTGACATTGTTATAGGGGATTACAATTTCATTGACTGTAATT
TAATCAACGAGCAAATCATCTCCTCCGAGGAAACACAGCATTCTTCACGTTTCCGTTCTCAAATCATGGAACGTG
ATGGGTCTGTCTGTATCTTCACAGGGGGTAAAGCTAGTATATGCCAGGCCGCACACCTGCTCCCTAGAAGTAAGG
GCGATAAGGTATCTATCCAATATCATTGCTTCATCTCAACTTCCTAAATGGCTTCCTAGTACATTCAGGCTGTTT
TCGAAGATCGCCGCCATTTATATGATTCCAACCTGGAACCTAGCGATCTAGATATAAACTCGGTTGAAAATGGAA
TCTTTTTGCGAGCAGATTTGCATCTATCATTTGCTCATGGGGAGTGTGCTTTCTTAAAGGTATGTAGAGTACACA
TTCTCTGAAATTTCCTGAGCCTGATTATTTTTAGACACCCAACTTTGCCTTAGACGTTGCTGACATCCCTGGGCT
TGAGGAAGGTCACATGCCAACCAATCGCATCACGTTACATCATTTGGAGCCGGATACCAGCCCTTGTCCAGTTCC
GCAACTTGACGCCCACATTTCCCAAGCAGCCATATCACCACCTTCGCCCCTCATTCTTGACTTCATGTATGGTAT
CGCTGTCTTTCAGCAATGGGGCAAGGGACAGGACATCCAAAACATAATTCAGCAACATTTTAACGAGCGGTATAA
ATCAATATCAATACCACCAGCTTCTCCACACTCAAGTCACAGTCCGAAATGGTCAGATGGAATGCTTCAAGCTAT
GGATGATGTCTTGGCACTCTCAATGTTTTTCAAGGGAGTCACTCCTGAATCAAAGGCTAGAGAAAGGCAAAGACA
AGAGGAGGCGGCAGAGGAGCGTGCGAAGGAGGCTAGTCGAGTGAAAGTGCAGGAGTGGATGCAAAGCTCATCTTC
CGTAGGAAGCTGATCCCAATTTAAACGGACGTACGCAGCTAGTCAACGTCACAAAAATCTACCCGTAATAAGAGA
AGTTTTTTACTAGCAATGTGTATAGTGTATTGTTTCACATAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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