Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|028370
Gene name
Location	scaffold_12:59314..60290
Strand	-
Gene length (bp)	976
Transcript length (bp)	918
Coding sequence length (bp)	918
Protein length (aa)	306

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF00106	adh_short	short chain dehydrogenase	4.1E-12	21	228
PF13561	adh_short_C2	Enoyl-(Acyl carrier protein) reductase	6.1E-10	28	150
PF08659	KR	KR domain	5.1E-07	24	115

Swissprot hits

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q8N5I4\|DHRSX_HUMAN	Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2	13	303	4.0E-11
sp\|Q8VBZ0\|DHRSX_MOUSE	Dehydrogenase/reductase SDR family member on chromosome X homolog OS=Mus musculus GN=Dhrsx PE=1 SV=2	7	301	1.0E-09
sp\|P34251\|YKK7_YEAST	Uncharacterized oxidoreductase YKL107W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL107W PE=1 SV=1	24	223	2.0E-09
sp\|Q9ERI6\|RDH14_MOUSE	Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1	23	295	4.0E-09
sp\|O74959\|YJCD_SCHPO	Uncharacterized oxidoreductase C736.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC736.13 PE=3 SV=1	13	264	6.0E-09

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Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q8N5I4\|DHRSX_HUMAN	Dehydrogenase/reductase SDR family member on chromosome X OS=Homo sapiens GN=DHRSX PE=2 SV=2	13	303	4.0E-11
sp\|Q8VBZ0\|DHRSX_MOUSE	Dehydrogenase/reductase SDR family member on chromosome X homolog OS=Mus musculus GN=Dhrsx PE=1 SV=2	7	301	1.0E-09
sp\|P34251\|YKK7_YEAST	Uncharacterized oxidoreductase YKL107W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL107W PE=1 SV=1	24	223	2.0E-09
sp\|Q9ERI6\|RDH14_MOUSE	Retinol dehydrogenase 14 OS=Mus musculus GN=Rdh14 PE=1 SV=1	23	295	4.0E-09
sp\|O74959\|YJCD_SCHPO	Uncharacterized oxidoreductase C736.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC736.13 PE=3 SV=1	13	264	6.0E-09
sp\|Q9HBH5\|RDH14_HUMAN	Retinol dehydrogenase 14 OS=Homo sapiens GN=RDH14 PE=1 SV=1	23	295	4.0E-08
sp\|Q99J47\|DRS7B_MOUSE	Dehydrogenase/reductase SDR family member 7B OS=Mus musculus GN=Dhrs7b PE=1 SV=1	21	223	1.0E-06
sp\|Q3T0R4\|DRS7B_BOVIN	Dehydrogenase/reductase SDR family member 7B OS=Bos taurus GN=DHRS7B PE=2 SV=1	21	223	3.0E-06

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GO

(None)

SignalP

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SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 37	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|028370 MSSLSSIRNANATFNPKYTPVAVFVGGTSGIGRAMAEVLGRHIEGKVDIVIVGRNKEAADELFSKMPSPTDKTYK REFIRCDVTRMKNVEAATKEILARHSKINFLILSPGVFTTRGRNETEEGLDTKLAVHYYSRWKFIKDLLPVLNKA SEEGEDAKVFSVLAPGKGSEIDLNDLGLKKTFSVTKAALQAPTYNDLMMEAFHDLNPAVTFIHGYPGVVRTSLFE KSDSTLVKFASPLVNLLLWPVFTSPEDCGEYMWHAVFNSTDGVFRTGSKGEDLGKQRYFGSEEAKKKLWDHTVEA TAVDS*
Coding	>AgabiH97\|028370 ATGTCTTCACTATCCTCCATCCGTAACGCAAATGCTACTTTTAACCCTAAATATACGCCGGTCGCGGTATTTGTG GGAGGAACATCTGGGATAGGACGTGCAATGGCTGAAGTACTTGGGCGACATATCGAAGGAAAAGTTGACATAGTC ATTGTCGGACGGAATAAGGAAGCCGCAGACGAGCTTTTCTCTAAAATGCCTTCCCCAACAGACAAAACATATAAG CGCGAATTCATTCGTTGCGATGTCACACGGATGAAAAACGTAGAAGCCGCTACTAAGGAGATTCTCGCTCGACAT TCAAAGATCAATTTTCTAATATTGTCGCCGGGGGTGTTCACGACGAGGGGTCGGAATGAGACGGAGGAGGGTTTG GATACCAAACTCGCAGTGCATTATTATTCTCGATGGAAGTTCATCAAGGATCTACTCCCCGTTCTGAATAAAGCC AGCGAGGAAGGAGAGGATGCCAAAGTTTTCTCCGTGCTTGCTCCGGGAAAGGGTAGTGAAATTGATTTGAATGAT CTTGGCCTCAAGAAAACTTTTTCTGTCACGAAGGCTGCGCTCCAAGCCCCGACGTATAATGATTTGATGATGGAG GCTTTTCATGATTTGAATCCCGCAGTCACTTTCATTCATGGGTATCCAGGGGTTGTTCGTACTTCATTGTTTGAA AAATCAGACTCTACCCTCGTGAAATTCGCCAGCCCCCTGGTCAATCTCTTACTCTGGCCTGTGTTCACGTCACCG GAAGACTGTGGAGAATATATGTGGCATGCAGTATTCAATAGTACGGATGGCGTTTTCAGAACGGGATCGAAGGGT GAGGATCTAGGGAAACAGCGGTACTTTGGCAGTGAAGAGGCAAAGAAGAAACTGTGGGACCATACAGTAGAAGCG ACAGCAGTTGACTCCTAA
Transcript	>AgabiH97\|028370 ATGTCTTCACTATCCTCCATCCGTAACGCAAATGCTACTTTTAACCCTAAATATACGCCGGTCGCGGTATTTGTG GGAGGAACATCTGGGATAGGACGTGCAATGGCTGAAGTACTTGGGCGACATATCGAAGGAAAAGTTGACATAGTC ATTGTCGGACGGAATAAGGAAGCCGCAGACGAGCTTTTCTCTAAAATGCCTTCCCCAACAGACAAAACATATAAG CGCGAATTCATTCGTTGCGATGTCACACGGATGAAAAACGTAGAAGCCGCTACTAAGGAGATTCTCGCTCGACAT TCAAAGATCAATTTTCTAATATTGTCGCCGGGGGTGTTCACGACGAGGGGTCGGAATGAGACGGAGGAGGGTTTG GATACCAAACTCGCAGTGCATTATTATTCTCGATGGAAGTTCATCAAGGATCTACTCCCCGTTCTGAATAAAGCC AGCGAGGAAGGAGAGGATGCCAAAGTTTTCTCCGTGCTTGCTCCGGGAAAGGGTAGTGAAATTGATTTGAATGAT CTTGGCCTCAAGAAAACTTTTTCTGTCACGAAGGCTGCGCTCCAAGCCCCGACGTATAATGATTTGATGATGGAG GCTTTTCATGATTTGAATCCCGCAGTCACTTTCATTCATGGGTATCCAGGGGTTGTTCGTACTTCATTGTTTGAA AAATCAGACTCTACCCTCGTGAAATTCGCCAGCCCCCTGGTCAATCTCTTACTCTGGCCTGTGTTCACGTCACCG GAAGACTGTGGAGAATATATGTGGCATGCAGTATTCAATAGTACGGATGGCGTTTTCAGAACGGGATCGAAGGGT GAGGATCTAGGGAAACAGCGGTACTTTGGCAGTGAAGAGGCAAAGAAGAAACTGTGGGACCATACAGTAGAAGCG ACAGCAGTTGACTCCTAA
Gene	>AgabiH97\|028370 ATGTCTTCACTATCCTCCATCCGTAACGCAAATGCTACTTTTAACCCTAAATATACGCCGGTCGCGGTATTTGTG GGAGGAACATCTGGGATAGGACGTGCAATGGCTGAAGTACTTGGGCGACATATCGAAGGAAAAGTTGACATAGTC ATTGTCGGACGGAATAAGGAAGCCGCAGACGAGCTTTTCTCTAAAATGCCTTCCCCAACAGACAAAACATATAAG CGCGAATTCATTCGTTGCGATGTCACACGGATGAAAAACGTAGAAGCCGCTACTAAGGAGATTCTCGCTCGACAT TCAAAGATCAATTTTCTAATATTGTCGCCGGGGGTGTTCACGACGAGGGGTCGGAATGAGACGGAGGAGGGTTTG GATACCAAACTCGCAGTGCATTATTATTCTCGATGGAAGTTCATCAAGGATCTACTCCCCGTTCTGAATAAAGCC AGCGAGGAAGGAGAGGATGCCAAAGTTTTCTCCGTGCTTGCTCCGGGAAAGGGTAGTGAAATTGATTTGAATGAT CTTGGCCTCAAGAAAACTTTTTCTGTCACGAAGGCTGCGCTCCAAGCCCCGACGTATAATGATTTGATGATGGAG GTGCGTCTCTCAAGCGCTTGCTGTTATTATTTGATCTCAATCATGTGAAATTTTCAAGGCTTTTCATGATTTGAA TCCCGCAGTCACTTTCATTCATGGGTATCCAGGGGTTGTTCGTACTTCATTGTTTGAAAAATCAGACTCTACCCT CGTGAAATTCGCCAGCCCCCTGGTCAATCTCTTACTCTGGCCTGTGTTCACGTCACCGGAAGACTGTGGAGAATA TATGTGGCATGCAGTATTCAATAGTACGGATGGCGTTTTCAGAACGGGATCGAAGGGTGAGGATCTAGGGAAACA GCGGTACTTTGGCAGTGAAGAGGCAAAGAAGAAACTGTGGGACCATACAGTAGAAGCGACAGCAGTTGACTCCTA A

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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