© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|028350 |
| Gene name | |
| Location | scaffold_12:56557..57807 |
| Strand | - |
| Gene length (bp) | 1250 |
| Transcript length (bp) | 1020 |
| Coding sequence length (bp) | 1020 |
| Protein length (aa) | 340 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF12849 | PBP_like_2 | PBP superfamily domain | 2.1E-08 | 61 | 264 |
| Localizations | Signals | Cytoplasm | Nucleus | Extracellular | Cell membrane | Mitochondrion | Plastid | Endoplasmic reticulum | Lysosome vacuole | Golgi apparatus | Peroxisome |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Extracellular | Signal peptide | 0.1285 | 0.0595 | 0.9339 | 0.0815 | 0.088 | 0.0163 | 0.4152 | 0.3745 | 0.2474 | 0.0202 |
| SignalP signal predicted | Location | Score |
|---|---|---|
| Yes | 1 - 23 | 0.999681 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 2.98 | 1.08 | 4.89 |
| Initials | Initials knots | 3.87 | 1.54 | 6.19 |
| Pileal_Stipeal_center | Stage I stipe center | 3.64 | 1.42 | 5.86 |
| Pileal_Stipeal_shell | Stage I stipe shell | 6.47 | 2.79 | 10.15 |
| DIF_stipe_center | Stage II stipe center | 3.40 | 1.30 | 5.50 |
| DIF_stipe_shell | Stage II stipe shell | 1.93 | 0.61 | 3.24 |
| DIF_stipe_skin | Stage II stipe skin | 2.01 | 0.64 | 3.38 |
| DIF_cap_skin | Stage II cap skin | 5.60 | 2.38 | 8.82 |
| DIF_cap_tissue | Stage II cap tissue | 5.33 | 2.24 | 8.42 |
| DIF_gill_tissue | Stage II gill tissue | 6.90 | 3.07 | 10.74 |
| YFB_stipe_center | Young fruiting body stipe center | 2.14 | 0.68 | 3.61 |
| YFB_stipe_shell | Young fruiting body stipe shell | 1.52 | 0.43 | 2.60 |
| YFB_stipe_skin | Young fruiting body stipe skin | 2.75 | 0.97 | 4.53 |
| YFB_cap_skin | Young fruiting body cap skin | 5.12 | 2.16 | 8.08 |
| YFB_cap_tissue | Young fruiting body cap tissue | 5.79 | 2.51 | 9.08 |
| YFB_gill_tissue | Young fruiting body gill tissue | 3.21 | 1.16 | 5.26 |
| YFB_veil | Young fruiting body veil | 4.93 | 2.01 | 7.85 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.041824 | yes |
| Casing | YFB_stipe_center | 0.590521 | no |
| Casing | YFB_stipe_shell | 0.167499 | no |
| Casing | YFB_stipe_skin | 0.923050 | no |
| Casing | YFB_cap_skin | 0.238763 | no |
| Casing | YFB_cap_tissue | 0.130962 | no |
| Casing | YFB_gill_tissue | 0.930360 | no |
| Casing | YFB_veil | 0.306438 | no |
| Casing | Initials | 0.676738 | no |
| Casing | Pileal_Stipeal_center | 0.769188 | no |
| Casing | Pileal_Stipeal_shell | 0.067520 | no |
| Casing | DIF_stipe_center | 0.861682 | no |
| Casing | DIF_stipe_shell | 0.436004 | no |
| Casing | DIF_stipe_skin | 0.499360 | no |
| Casing | DIF_cap_skin | 0.153274 | no |
| Casing | DIF_cap_tissue | 0.201274 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.004160 | yes |
| DIF_gill_tissue | YFB_stipe_shell | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.019169 | yes |
| DIF_gill_tissue | YFB_cap_skin | 0.554456 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.774463 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.065086 | no |
| DIF_gill_tissue | YFB_veil | 0.505788 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.588640 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.707449 | no |
| YFB_stipe_center | YFB_cap_skin | 0.042909 | yes |
| YFB_stipe_center | YFB_cap_tissue | 0.018624 | yes |
| YFB_stipe_center | YFB_gill_tissue | 0.479064 | no |
| YFB_stipe_center | YFB_veil | 0.056760 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.239533 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.005302 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.002084 | yes |
| YFB_stipe_shell | YFB_gill_tissue | 0.118397 | no |
| YFB_stipe_shell | YFB_veil | 0.006387 | yes |
| YFB_stipe_skin | YFB_cap_skin | 0.154913 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.075556 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.837237 | no |
| YFB_stipe_skin | YFB_veil | 0.207281 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.857848 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.338598 | no |
| YFB_cap_skin | YFB_veil | 0.960086 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.188530 | no |
| YFB_cap_tissue | YFB_veil | 0.809347 | no |
| YFB_gill_tissue | YFB_veil | 0.403699 | no |
| Initials | DIF_gill_tissue | 0.161568 | no |
| Initials | YFB_stipe_center | 0.208106 | no |
| Initials | YFB_stipe_shell | 0.032504 | yes |
| Initials | YFB_stipe_skin | 0.538832 | no |
| Initials | YFB_cap_skin | 0.609648 | no |
| Initials | YFB_cap_tissue | 0.410403 | no |
| Initials | YFB_gill_tissue | 0.788728 | no |
| Initials | YFB_veil | 0.688260 | no |
| Initials | Pileal_Stipeal_center | 0.940900 | no |
| Initials | Pileal_Stipeal_shell | 0.245761 | no |
| Initials | DIF_stipe_center | 0.857105 | no |
| Initials | DIF_stipe_shell | 0.131993 | no |
| Initials | DIF_stipe_skin | 0.165026 | no |
| Initials | DIF_cap_skin | 0.451220 | no |
| Initials | DIF_cap_tissue | 0.545260 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.108700 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.272155 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.046536 | yes |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.635348 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.507842 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.313977 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.866545 | no |
| Pileal_Stipeal_center | YFB_veil | 0.590192 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.174368 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.930556 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.177815 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.218427 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.356368 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.436722 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.933095 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.007782 | yes |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.000613 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.035537 | yes |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.679551 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.876871 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.103634 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.627575 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.128227 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.003765 | yes |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.006032 | yes |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.827477 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.753266 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.075908 | no |
| DIF_stipe_center | YFB_stipe_center | 0.378390 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.075382 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.746576 | no |
| DIF_stipe_center | YFB_cap_skin | 0.397055 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.234408 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.947092 | no |
| DIF_stipe_center | YFB_veil | 0.478659 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.249725 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.301751 | no |
| DIF_stipe_center | DIF_cap_skin | 0.266541 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.338598 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.001140 | yes |
| DIF_stipe_shell | YFB_stipe_center | 0.904245 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.746225 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.556243 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.018896 | yes |
| DIF_stipe_shell | YFB_cap_tissue | 0.006742 | yes |
| DIF_stipe_shell | YFB_gill_tissue | 0.340893 | no |
| DIF_stipe_shell | YFB_veil | 0.025711 | yes |
| DIF_stipe_shell | DIF_stipe_skin | 0.966776 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.009123 | yes |
| DIF_stipe_shell | DIF_cap_tissue | 0.014081 | yes |
| DIF_stipe_skin | DIF_gill_tissue | 0.002525 | yes |
| DIF_stipe_skin | YFB_stipe_center | 0.944437 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.686282 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.615060 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.025205 | yes |
| DIF_stipe_skin | YFB_cap_tissue | 0.008457 | yes |
| DIF_stipe_skin | YFB_gill_tissue | 0.394341 | no |
| DIF_stipe_skin | YFB_veil | 0.033211 | yes |
| DIF_stipe_skin | DIF_cap_skin | 0.013485 | yes |
| DIF_stipe_skin | DIF_cap_tissue | 0.018624 | yes |
| DIF_cap_skin | DIF_gill_tissue | 0.714386 | no |
| DIF_cap_skin | YFB_stipe_center | 0.020790 | yes |
| DIF_cap_skin | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.089979 | no |
| DIF_cap_skin | YFB_cap_skin | 0.898822 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.963965 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.219634 | no |
| DIF_cap_skin | YFB_veil | 0.853316 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.945603 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.628241 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.028675 | yes |
| DIF_cap_tissue | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.120367 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.958143 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.909418 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.276147 | no |
| DIF_cap_tissue | YFB_veil | 0.916321 | no |
| Orthofinder run ID | 1 |
| Orthogroup | 9571 |
| Change Orthofinder run |
| Species | Protein ID |
|---|---|
| Agaricus bisporus var bisporus H39 | AgabiH39|028350 |
| Agaricus bisporus var bisporus H97 | AgabiH97|028350 (this protein) |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|028350 MKTTLRFYALLAVLSAPLAVVQAQSSTSDSLMPAAVYNGGHNGTTKVGLRIANGGAGQSGLIGAWGDAFINYMVG KGHEPFTVEWYLGDTTQSIEYLEKGQVDVAVTYNEAAERQVYDSELVSAWLYGFHDHFYFVGPPSNPAQLSTNDS ILAMARRIVQVGNQQAAVPPTNGTVTRFLSRYDKSATNIKESEIFIKIGQVPWAYAYSKWYHQYPRFPIQALEAA SLLSEYTLTDRGTWLSSSPDVRSRLTIFKAGTDNETDILLNPARVLIAKEDNLVDKEIGQAFGKWVVLYDEQNKT GGQNVIETFTGTGQTGETKEPLYTRAPVNWSPANSTAGQ* |
| Coding | >AgabiH97|028350 ATGAAAACCACACTCAGGTTTTATGCATTGCTAGCGGTCCTCTCTGCCCCCCTTGCTGTGGTTCAAGCCCAGTCT AGTACTTCTGACTCTTTGATGCCTGCAGCTGTCTATAATGGCGGTCATAATGGTACAACAAAAGTTGGTCTACGT ATTGCTAACGGAGGCGCTGGACAGTCGGGGCTAATTGGCGCCTGGGGCGACGCGTTTATCAACTACATGGTCGGT AAAGGCCATGAACCTTTTACCGTGGAGTGGTATCTGGGCGATACGACCCAGAGTATTGAGTATTTGGAGAAAGGT CAGGTAGATGTTGCTGTGACCTACAATGAGGCTGCGGAACGGCAGGTCTACGATTCTGAGCTGGTGTCCGCTTGG CTCTACGGTTTTCATGATCATTTCTATTTTGTCGGACCTCCGAGTAACCCAGCCCAACTTTCCACCAACGATTCT ATTCTTGCCATGGCGCGTAGGATCGTCCAGGTCGGAAATCAACAAGCTGCAGTCCCACCAACCAATGGCACTGTC ACCCGTTTTCTTTCTCGGTATGACAAAAGTGCCACGAACATTAAGGAAAGCGAGATTTTCATCAAGATCGGCCAA GTTCCATGGGCTTATGCCTACTCGAAATGGTACCATCAATACCCGCGTTTCCCCATTCAAGCACTTGAAGCTGCC TCCCTTCTGAGTGAATATACGCTCACCGACCGTGGAACATGGCTATCGAGTTCCCCAGACGTTCGATCGAGGTTG ACGATTTTCAAAGCCGGAACTGATAACGAGACGGATATATTATTGAATCCCGCTCGCGTTTTGATCGCCAAAGAA GACAATCTGGTTGATAAAGAAATTGGTCAAGCTTTTGGTAAATGGGTGGTTTTGTATGATGAACAGAACAAGACT GGTGGGCAGAATGTGATTGAGACTTTCACGGGAACTGGACAGACTGGAGAAACGAAGGAGCCTTTGTATACCCGC GCACCAGTGAACTGGTCTCCTGCCAATTCGACAGCTGGCCAGTAG |
| Transcript | >AgabiH97|028350 ATGAAAACCACACTCAGGTTTTATGCATTGCTAGCGGTCCTCTCTGCCCCCCTTGCTGTGGTTCAAGCCCAGTCT AGTACTTCTGACTCTTTGATGCCTGCAGCTGTCTATAATGGCGGTCATAATGGTACAACAAAAGTTGGTCTACGT ATTGCTAACGGAGGCGCTGGACAGTCGGGGCTAATTGGCGCCTGGGGCGACGCGTTTATCAACTACATGGTCGGT AAAGGCCATGAACCTTTTACCGTGGAGTGGTATCTGGGCGATACGACCCAGAGTATTGAGTATTTGGAGAAAGGT CAGGTAGATGTTGCTGTGACCTACAATGAGGCTGCGGAACGGCAGGTCTACGATTCTGAGCTGGTGTCCGCTTGG CTCTACGGTTTTCATGATCATTTCTATTTTGTCGGACCTCCGAGTAACCCAGCCCAACTTTCCACCAACGATTCT ATTCTTGCCATGGCGCGTAGGATCGTCCAGGTCGGAAATCAACAAGCTGCAGTCCCACCAACCAATGGCACTGTC ACCCGTTTTCTTTCTCGGTATGACAAAAGTGCCACGAACATTAAGGAAAGCGAGATTTTCATCAAGATCGGCCAA GTTCCATGGGCTTATGCCTACTCGAAATGGTACCATCAATACCCGCGTTTCCCCATTCAAGCACTTGAAGCTGCC TCCCTTCTGAGTGAATATACGCTCACCGACCGTGGAACATGGCTATCGAGTTCCCCAGACGTTCGATCGAGGTTG ACGATTTTCAAAGCCGGAACTGATAACGAGACGGATATATTATTGAATCCCGCTCGCGTTTTGATCGCCAAAGAA GACAATCTGGTTGATAAAGAAATTGGTCAAGCTTTTGGTAAATGGGTGGTTTTGTATGATGAACAGAACAAGACT GGTGGGCAGAATGTGATTGAGACTTTCACGGGAACTGGACAGACTGGAGAAACGAAGGAGCCTTTGTATACCCGC GCACCAGTGAACTGGTCTCCTGCCAATTCGACAGCTGGCCAGTAG |
| Gene | >AgabiH97|028350 ATGAAAACCACACTCAGGTTTTATGCATTGCTAGCGGTCCTCTCTGCCCCCCTTGCTGTGGTTCAAGCCCAGTCT AGTACTTCTGACTCTTTGATGCCTGCAGCTGTCTATAATGGCGGTCATAATGGTACAACAAAAGTTGGTCTACGT ATTGCTAACGGAGGCGCTGGACAGTCGGGGCTAATTGGCGCCTGGGGCGACGCGTTTATCAACTACATGGTCGGT AAAGGCCATGAACCTTTTACCGTGAGTCTATCCGTTAGGTTTATTAAGACTGTTAATGACAATTGCTGTTAGGTG GAGTGGTATCTGGGCGATACGACCCAGAGTATTGAGTATTTGGAGAAAGGTCAGGTAGATGTTGCTGTGACCTAC AATGAGGCTGCGGAACGGCAGGTCTACGATTCTGAGCTGGTGTCCGCTTGGCTCTACGGTTTTCATGTGAGTACT AGTACTGACGTCATATTTGACATCACATTTTGACGTTCTACGTCTAGGATCATTTCTATTTTGTCGGACCTCCGA GTAACCCAGCCCAACTTTCCACCAACGATTCTATTCTTGCCATGGCGCGTAGGATCGTCCAGGTCGGAAATCAAC AAGCTGCAGTAAGATACTTTTTCCATGAATATATGAAATTTAAACTTATGCTATTCGAACTCGCGTTAGGTCCCA CCAACCAATGGCACTGTCACCCGTTTTCTTTCTCGGTATGACAAAAGTGCCACGAACATTAAGGAAAGCGAGATT TTCATCAAGATCGGCCAAGTGAGTTTTCCAAAAAGAACTATGGGATGTCAAAATGGCTGACATTCTTCCTTGGAC CTTAGGTTCCATGGGCTTATGCCTACTCGAAATGGTACCATCAATACCCGCGTTTCCCCATTCAAGCACTTGAAG CTGCCTCCCTTCTGAGTGAATATACGCTCACCGACCGTGGAACATGGCTATCGAGTTCCCCAGACGTTCGATCGA GGTTGACGATTTTCAAAGCCGGAACTGATAACGAGACGGATATATTATTGAATCCCGCTCGCGTTTTGATCGCCA AAGAAGACAATCTGGTTGATAAAGAAATTGGTCAAGCTTTTGGTAAATGGGTGGTTTTGTATGATGAACAGAACA AGACTGGTGGGCAGAATGTGATTGAGACTTTCACGGGAACTGGACAGACTGGAGAAACGAAGGAGCCTTTGTATA CCCGCGCACCAGTGAACTGGTCTCCTGCCAATTCGACAGCTGGCCAGTAG |