Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|027730
Gene name
Locationscaffold_11:1606181..1607531
Strand-
Gene length (bp)1350
Transcript length (bp)1224
Coding sequence length (bp)1224
Protein length (aa) 408

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07859 Abhydrolase_3 alpha/beta hydrolase fold 2.1E-20 143 355
PF10340 Say1_Mug180 Steryl acetyl hydrolase 7.1E-09 129 286

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P18773|EST_ACILW Esterase OS=Acinetobacter lwoffii GN=est PE=3 SV=2 112 353 4.0E-10
sp|Q01109|BAH_STRHY Acetyl-hydrolase OS=Streptomyces hygroscopicus GN=bah PE=3 SV=3 134 400 4.0E-08
sp|P9WK85|LIPR_MYCTU Putative acetyl-hydrolase LipR OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=lipR PE=1 SV=1 141 265 5.0E-06
sp|P9WK84|LIPR_MYCTO Putative acetyl-hydrolase LipR OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=lipR PE=3 SV=1 141 265 5.0E-06

GO

GO Term Description Terminal node
GO:0016787 hydrolase activity Yes
GO:0003824 catalytic activity No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 15 37 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 24.77 13.50 36.03
Initials Initials knots 22.46 12.12 32.79
Pileal_Stipeal_center Stage I stipe center 39.44 22.73 56.16
Pileal_Stipeal_shell Stage I stipe shell 35.48 20.24 50.73
DIF_stipe_center Stage II stipe center 46.21 27.03 65.40
DIF_stipe_shell Stage II stipe shell 38.45 22.12 54.77
DIF_stipe_skin Stage II stipe skin 33.91 19.11 48.71
DIF_cap_skin Stage II cap skin 41.96 24.15 59.77
DIF_cap_tissue Stage II cap tissue 50.67 29.59 71.75
DIF_gill_tissue Stage II gill tissue 52.40 30.65 74.14
YFB_stipe_center Young fruiting body stipe center 35.72 20.42 51.01
YFB_stipe_shell Young fruiting body stipe shell 34.78 19.81 49.74
YFB_stipe_skin Young fruiting body stipe skin 35.91 20.53 51.28
YFB_cap_skin Young fruiting body cap skin 42.29 24.55 60.03
YFB_cap_tissue Young fruiting body cap tissue 60.47 35.94 85.00
YFB_gill_tissue Young fruiting body gill tissue 35.87 20.32 51.41
YFB_veil Young fruiting body veil 45.13 26.28 63.98

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.008457 yes
Casing YFB_stipe_center 0.282407 no
Casing YFB_stipe_shell 0.333894 no
Casing YFB_stipe_skin 0.278986 no
Casing YFB_cap_skin 0.069013 no
Casing YFB_cap_tissue 0.001625 yes
Casing YFB_gill_tissue 0.287593 no
Casing YFB_veil 0.043772 yes
Casing Initials 0.857169 no
Casing Pileal_Stipeal_center 0.137165 no
Casing Pileal_Stipeal_shell 0.296798 no
Casing DIF_stipe_center 0.035993 yes
Casing DIF_stipe_shell 0.176313 no
Casing DIF_stipe_skin 0.396273 no
Casing DIF_cap_skin 0.084017 no
Casing DIF_cap_tissue 0.013782 yes
DIF_gill_tissue YFB_stipe_center 0.224601 no
DIF_gill_tissue YFB_stipe_shell 0.183689 no
DIF_gill_tissue YFB_stipe_skin 0.238427 no
DIF_gill_tissue YFB_cap_skin 0.570765 no
DIF_gill_tissue YFB_cap_tissue 0.740828 no
DIF_gill_tissue YFB_gill_tissue 0.243209 no
DIF_gill_tissue YFB_veil 0.729441 no
YFB_stipe_center YFB_stipe_shell 0.962135 no
YFB_stipe_center YFB_stipe_skin 0.992209 no
YFB_stipe_center YFB_cap_skin 0.686104 no
YFB_stipe_center YFB_cap_tissue 0.056760 no
YFB_stipe_center YFB_gill_tissue 0.994016 no
YFB_stipe_center YFB_veil 0.530896 no
YFB_stipe_shell YFB_stipe_skin 0.954721 no
YFB_stipe_shell YFB_cap_skin 0.623061 no
YFB_stipe_shell YFB_cap_tissue 0.045060 yes
YFB_stipe_shell YFB_gill_tissue 0.957035 no
YFB_stipe_shell YFB_veil 0.466993 no
YFB_stipe_skin YFB_cap_skin 0.698485 no
YFB_stipe_skin YFB_cap_tissue 0.062807 no
YFB_stipe_skin YFB_gill_tissue 0.997708 no
YFB_stipe_skin YFB_veil 0.542506 no
YFB_cap_skin YFB_cap_tissue 0.241805 no
YFB_cap_skin YFB_gill_tissue 0.703416 no
YFB_cap_skin YFB_veil 0.900765 no
YFB_cap_tissue YFB_gill_tissue 0.072150 no
YFB_cap_tissue YFB_veil 0.382748 no
YFB_gill_tissue YFB_veil 0.547396 no
Initials DIF_gill_tissue 0.001625 yes
Initials YFB_stipe_center 0.138696 no
Initials YFB_stipe_shell 0.167625 no
Initials YFB_stipe_skin 0.139707 no
Initials YFB_cap_skin 0.027943 yes
Initials YFB_cap_tissue 0.000613 yes
Initials YFB_gill_tissue 0.142080 no
Initials YFB_veil 0.012577 yes
Initials Pileal_Stipeal_center 0.056170 no
Initials Pileal_Stipeal_shell 0.144858 no
Initials DIF_stipe_center 0.011968 yes
Initials DIF_stipe_shell 0.075908 no
Initials DIF_stipe_skin 0.213293 no
Initials DIF_cap_skin 0.034377 yes
Initials DIF_cap_tissue 0.002525 yes
Pileal_Stipeal_center DIF_gill_tissue 0.415960 no
Pileal_Stipeal_center YFB_stipe_center 0.842649 no
Pileal_Stipeal_center YFB_stipe_shell 0.787102 no
Pileal_Stipeal_center YFB_stipe_skin 0.852254 no
Pileal_Stipeal_center YFB_cap_skin 0.893952 no
Pileal_Stipeal_center YFB_cap_tissue 0.147956 no
Pileal_Stipeal_center YFB_gill_tissue 0.854305 no
Pileal_Stipeal_center YFB_veil 0.767856 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.831657 no
Pileal_Stipeal_center DIF_stipe_center 0.718572 no
Pileal_Stipeal_center DIF_stipe_shell 0.964014 no
Pileal_Stipeal_center DIF_stipe_skin 0.740865 no
Pileal_Stipeal_center DIF_cap_skin 0.909663 no
Pileal_Stipeal_center DIF_cap_tissue 0.495833 no
Pileal_Stipeal_shell DIF_gill_tissue 0.210782 no
Pileal_Stipeal_shell YFB_stipe_center 0.990838 no
Pileal_Stipeal_shell YFB_stipe_shell 0.970879 no
Pileal_Stipeal_shell YFB_stipe_skin 0.982365 no
Pileal_Stipeal_shell YFB_cap_skin 0.669865 no
Pileal_Stipeal_shell YFB_cap_tissue 0.055779 no
Pileal_Stipeal_shell YFB_gill_tissue 0.984663 no
Pileal_Stipeal_shell YFB_veil 0.512411 no
Pileal_Stipeal_shell DIF_stipe_center 0.459685 no
Pileal_Stipeal_shell DIF_stipe_shell 0.876067 no
Pileal_Stipeal_shell DIF_stipe_skin 0.935756 no
Pileal_Stipeal_shell DIF_cap_skin 0.690614 no
Pileal_Stipeal_shell DIF_cap_tissue 0.265141 no
DIF_stipe_center DIF_gill_tissue 0.784523 no
DIF_stipe_center YFB_stipe_center 0.473191 no
DIF_stipe_center YFB_stipe_shell 0.412675 no
DIF_stipe_center YFB_stipe_skin 0.493477 no
DIF_stipe_center YFB_cap_skin 0.856552 no
DIF_stipe_center YFB_cap_tissue 0.439090 no
DIF_stipe_center YFB_gill_tissue 0.497754 no
DIF_stipe_center YFB_veil 0.966805 no
DIF_stipe_center DIF_stipe_shell 0.655633 no
DIF_stipe_center DIF_stipe_skin 0.370828 no
DIF_stipe_center DIF_cap_skin 0.845624 no
DIF_stipe_center DIF_cap_tissue 0.852582 no
DIF_stipe_shell DIF_gill_tissue 0.365564 no
DIF_stipe_shell YFB_stipe_center 0.888396 no
DIF_stipe_shell YFB_stipe_shell 0.838904 no
DIF_stipe_shell YFB_stipe_skin 0.896450 no
DIF_stipe_shell YFB_cap_skin 0.846859 no
DIF_stipe_shell YFB_cap_tissue 0.119910 no
DIF_stipe_shell YFB_gill_tissue 0.896827 no
DIF_stipe_shell YFB_veil 0.710235 no
DIF_stipe_shell DIF_stipe_skin 0.792399 no
DIF_stipe_shell DIF_cap_skin 0.866152 no
DIF_stipe_shell DIF_cap_tissue 0.438945 no
DIF_stipe_skin DIF_gill_tissue 0.160121 no
DIF_stipe_skin YFB_stipe_center 0.926080 no
DIF_stipe_skin YFB_stipe_shell 0.965238 no
DIF_stipe_skin YFB_stipe_skin 0.917265 no
DIF_stipe_skin YFB_cap_skin 0.571786 no
DIF_stipe_skin YFB_cap_tissue 0.038720 yes
DIF_stipe_skin YFB_gill_tissue 0.920950 no
DIF_stipe_skin YFB_veil 0.419555 no
DIF_stipe_skin DIF_cap_skin 0.596083 no
DIF_stipe_skin DIF_cap_tissue 0.206115 no
DIF_cap_skin DIF_gill_tissue 0.569883 no
DIF_cap_skin YFB_stipe_center 0.709559 no
DIF_cap_skin YFB_stipe_shell 0.650572 no
DIF_cap_skin YFB_stipe_skin 0.723620 no
DIF_cap_skin YFB_cap_skin 0.988282 no
DIF_cap_skin YFB_cap_tissue 0.246933 no
DIF_cap_skin YFB_gill_tissue 0.729278 no
DIF_cap_skin YFB_veil 0.889071 no
DIF_cap_skin DIF_cap_tissue 0.646489 no
DIF_cap_tissue DIF_gill_tissue 0.953316 no
DIF_cap_tissue YFB_stipe_center 0.278986 no
DIF_cap_tissue YFB_stipe_shell 0.229700 no
DIF_cap_tissue YFB_stipe_skin 0.295235 no
DIF_cap_tissue YFB_cap_skin 0.656703 no
DIF_cap_tissue YFB_cap_tissue 0.663812 no
DIF_cap_tissue YFB_gill_tissue 0.300688 no
DIF_cap_tissue YFB_veil 0.807090 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|027730
MPVIYKYGAQPWKALFITYVILTTLFVRIPLWTLLAIPRTLRPRRSWDIRRVLLVKLIRTVSEVEENIGRMNFSP
DHRALKITPGVPAVWIPPVRSSLVVGNLAEWAQRACVEPIKIPGYWTIQEGANIKHTSRPERGEKVVLSLHGGSY
TRISAHPTEIPGVIGRYLIKHTNSIQRVFAPEYRLSSTQPDAHPFPTALLDALTAYVFLVNEIGFDPSDIIVEGD
SAGANLAYALTRYLVEYSWTPELPAPPGALLLLSPWADLSDSHDHLENGSVSKNIASDVLGDPTEKLKDPVKAFT
GPHGLEAAQNNPYISPASLYPSLVVNFKRFPRTFIVAGGAEVLIDQIRTLRDRMIKDIGEGNGVSDGDGMVRYYE
APDGFHDYMVFPWHKPEFTDTYKAIAEWISLA*
Coding >AgabiH97|027730
ATGCCGGTGATTTACAAGTACGGCGCGCAGCCGTGGAAGGCTTTGTTCATTACCTACGTCATCCTGACCACTCTA
TTTGTTCGCATTCCTCTATGGACGTTGCTGGCCATTCCAAGAACTCTTCGACCAAGAAGGTCCTGGGATATCAGA
CGCGTTTTACTGGTTAAATTGATACGCACAGTTTCCGAAGTAGAAGAAAACATTGGTCGAATGAATTTTTCACCT
GATCATAGAGCTCTCAAAATTACTCCCGGAGTCCCCGCTGTCTGGATTCCACCTGTACGCAGCTCTCTCGTCGTG
GGCAATTTAGCGGAGTGGGCACAGCGCGCATGTGTCGAACCAATAAAGATACCCGGGTATTGGACGATTCAAGAA
GGTGCTAACATCAAACACACATCCCGCCCCGAACGTGGAGAGAAAGTCGTTCTGTCCTTGCACGGCGGTAGTTAC
ACCCGAATCTCTGCACACCCCACAGAAATACCTGGCGTCATTGGTCGTTACCTCATCAAACACACTAACAGCATT
CAACGCGTTTTCGCACCCGAATACCGTCTATCATCTACACAGCCAGATGCACACCCTTTCCCCACCGCACTTCTT
GATGCTCTAACCGCTTATGTATTTCTGGTCAACGAAATTGGTTTTGACCCATCCGATATCATAGTCGAGGGTGAC
TCGGCTGGTGCAAATCTCGCTTACGCTCTCACCCGTTATCTCGTGGAGTATAGTTGGACGCCAGAACTACCAGCA
CCACCAGGTGCCCTTCTTTTGCTTTCCCCCTGGGCCGATCTCTCGGACAGTCACGACCACCTTGAAAACGGATCG
GTCTCAAAAAATATCGCATCTGATGTTCTCGGGGACCCTACTGAAAAGCTCAAAGACCCAGTGAAAGCGTTCACT
GGTCCCCATGGACTCGAGGCCGCCCAAAACAACCCGTATATCTCACCGGCATCCCTATACCCATCGCTAGTTGTG
AATTTCAAACGTTTTCCCAGGACGTTCATTGTTGCCGGCGGTGCTGAAGTTCTCATTGATCAAATCCGAACGTTG
CGGGATAGGATGATCAAGGATATAGGTGAAGGGAATGGTGTATCTGATGGAGATGGAATGGTACGGTATTATGAA
GCACCTGACGGTTTTCATGATTACATGGTTTTCCCATGGCATAAACCAGAATTTACTGATACTTACAAAGCGATT
GCAGAGTGGATTTCTCTCGCGTAG
Transcript >AgabiH97|027730
ATGCCGGTGATTTACAAGTACGGCGCGCAGCCGTGGAAGGCTTTGTTCATTACCTACGTCATCCTGACCACTCTA
TTTGTTCGCATTCCTCTATGGACGTTGCTGGCCATTCCAAGAACTCTTCGACCAAGAAGGTCCTGGGATATCAGA
CGCGTTTTACTGGTTAAATTGATACGCACAGTTTCCGAAGTAGAAGAAAACATTGGTCGAATGAATTTTTCACCT
GATCATAGAGCTCTCAAAATTACTCCCGGAGTCCCCGCTGTCTGGATTCCACCTGTACGCAGCTCTCTCGTCGTG
GGCAATTTAGCGGAGTGGGCACAGCGCGCATGTGTCGAACCAATAAAGATACCCGGGTATTGGACGATTCAAGAA
GGTGCTAACATCAAACACACATCCCGCCCCGAACGTGGAGAGAAAGTCGTTCTGTCCTTGCACGGCGGTAGTTAC
ACCCGAATCTCTGCACACCCCACAGAAATACCTGGCGTCATTGGTCGTTACCTCATCAAACACACTAACAGCATT
CAACGCGTTTTCGCACCCGAATACCGTCTATCATCTACACAGCCAGATGCACACCCTTTCCCCACCGCACTTCTT
GATGCTCTAACCGCTTATGTATTTCTGGTCAACGAAATTGGTTTTGACCCATCCGATATCATAGTCGAGGGTGAC
TCGGCTGGTGCAAATCTCGCTTACGCTCTCACCCGTTATCTCGTGGAGTATAGTTGGACGCCAGAACTACCAGCA
CCACCAGGTGCCCTTCTTTTGCTTTCCCCCTGGGCCGATCTCTCGGACAGTCACGACCACCTTGAAAACGGATCG
GTCTCAAAAAATATCGCATCTGATGTTCTCGGGGACCCTACTGAAAAGCTCAAAGACCCAGTGAAAGCGTTCACT
GGTCCCCATGGACTCGAGGCCGCCCAAAACAACCCGTATATCTCACCGGCATCCCTATACCCATCGCTAGTTGTG
AATTTCAAACGTTTTCCCAGGACGTTCATTGTTGCCGGCGGTGCTGAAGTTCTCATTGATCAAATCCGAACGTTG
CGGGATAGGATGATCAAGGATATAGGTGAAGGGAATGGTGTATCTGATGGAGATGGAATGGTACGGTATTATGAA
GCACCTGACGGTTTTCATGATTACATGGTTTTCCCATGGCATAAACCAGAATTTACTGATACTTACAAAGCGATT
GCAGAGTGGATTTCTCTCGCGTAG
Gene >AgabiH97|027730
ATGCCGGTGATTTACAAGTACGGCGCGCAGCCGTGGAAGGCTTTGTTCATTACCTACGTCATCCTGACCACTCTA
TTTGTTCGCATTCCTCTATGGACGTTGCTGGCCATTCCAAGGTGAGTCCTTAAAGTAACCCCTATTCGGGTTCCT
TGATTCATACGTTGTCGTTGCAGAACTCTTCGACCAAGAAGGTCCTGGGATATCAGACGCGTTTTACTGGTTAAA
TTGATACGCACAGTTTCCGAAGTAGAAGAAAAGTAAGCGGGCTTAATTATGTCACTCTTACGATCGCTTACGATC
GATTTTCTCAAATGCCCTCGGATTAGCATTGGTCGAATGAATTTTTCACCTGATCATAGAGCTCTCAAAATTACT
CCCGGAGTCCCCGCTGTCTGGATTCCACCTGTACGCAGCTCTCTCGTCGTGGGCAATTTAGCGGAGTGGGCACAG
CGCGCATGTGTCGAACCAATAAAGATACCCGGGTATTGGACGATTCAAGAAGGTGCTAACATCAAACACACATCC
CGCCCCGAACGTGGAGAGAAAGTCGTTCTGTCCTTGCACGGCGGTAGTTACACCCGAATCTCTGCACACCCCACA
GAAATACCTGGCGTCATTGGTCGTTACCTCATCAAACACACTAACAGCATTCAACGCGTTTTCGCACCCGAATAC
CGTCTATCATCTACACAGCCAGATGCACACCCTTTCCCCACCGCACTTCTTGATGCTCTAACCGCTTATGTATTT
CTGGTCAACGAAATTGGTTTTGACCCATCCGATATCATAGTCGAGGGTGACTCGGCTGGTGCAAATCTCGCTTAC
GCTCTCACCCGTTATCTCGTGGAGTATAGTTGGACGCCAGAACTACCAGCACCACCAGGTGCCCTTCTTTTGCTT
TCCCCCTGGGCCGATCTCTCGGACAGTCACGACCACCTTGAAAACGGATCGGTCTCAAAAAATATCGCATCTGAT
GTTCTCGGGGACCCTACTGAAAAGCTCAAAGACCCAGTGAAAGCGTTCACTGGTCCCCATGGACTCGAGGCCGCC
CAAAACAACCCGTATATCTCACCGGCATCCCTATACCCATCGCTAGTTGTGAATTTCAAACGTTTTCCCAGGACG
TTCATTGTTGCCGGCGGTGCTGAAGTTCTCATTGATCAAATCCGAACGTTGCGGGATAGGATGATCAAGGATATA
GGTGAAGGGAATGGTGTATCTGATGGAGATGGAATGGTACGGTATTATGAAGCACCTGACGGTTTTCATGATTAC
ATGGTTTTCCCATGGCATAAACCAGAATTTACTGATACTTACAAAGCGATTGCAGAGTGGATTTCTCTCGCGTAG

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