Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|027020
Gene name
Locationscaffold_11:1388993..1390546
Strand+
Gene length (bp)1553
Transcript length (bp)1149
Coding sequence length (bp)1149
Protein length (aa) 383

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01435 Peptidase_M48 Peptidase family M48 4.3E-30 176 340

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|Q9P7G4|OMA1_SCHPO Mitochondrial metalloendopeptidase OMA1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oma1 PE=3 SV=1 66 344 7.0E-48
sp|P36163|OMA1_YEAST Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2 38 364 1.0E-40
sp|D3ZS74|OMA1_RAT Metalloendopeptidase OMA1, mitochondrial OS=Rattus norvegicus GN=Oma1 PE=3 SV=1 76 347 2.0E-19
sp|Q3SZN3|OMA1_BOVIN Metalloendopeptidase OMA1, mitochondrial OS=Bos taurus GN=OMA1 PE=2 SV=2 57 347 2.0E-19
sp|Q9D8H7|OMA1_MOUSE Metalloendopeptidase OMA1, mitochondrial OS=Mus musculus GN=Oma1 PE=1 SV=1 26 347 1.0E-18
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|Q9P7G4|OMA1_SCHPO Mitochondrial metalloendopeptidase OMA1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=oma1 PE=3 SV=1 66 344 7.0E-48
sp|P36163|OMA1_YEAST Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2 38 364 1.0E-40
sp|D3ZS74|OMA1_RAT Metalloendopeptidase OMA1, mitochondrial OS=Rattus norvegicus GN=Oma1 PE=3 SV=1 76 347 2.0E-19
sp|Q3SZN3|OMA1_BOVIN Metalloendopeptidase OMA1, mitochondrial OS=Bos taurus GN=OMA1 PE=2 SV=2 57 347 2.0E-19
sp|Q9D8H7|OMA1_MOUSE Metalloendopeptidase OMA1, mitochondrial OS=Mus musculus GN=Oma1 PE=1 SV=1 26 347 1.0E-18
sp|Q96E52|OMA1_HUMAN Metalloendopeptidase OMA1, mitochondrial OS=Homo sapiens GN=OMA1 PE=1 SV=1 57 347 5.0E-18
sp|E9QBI7|OMA1_DANRE Metalloendopeptidase OMA1, mitochondrial OS=Danio rerio GN=oma1 PE=3 SV=1 56 349 2.0E-15
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GO

GO Term Description Terminal node
GO:0006508 proteolysis Yes
GO:0004222 metalloendopeptidase activity Yes
GO:0008237 metallopeptidase activity No
GO:0004175 endopeptidase activity No
GO:0044238 primary metabolic process No
GO:0071704 organic substance metabolic process No
GO:0043170 macromolecule metabolic process No
GO:0008150 biological_process No
GO:0003824 catalytic activity No
GO:1901564 organonitrogen compound metabolic process No
GO:0006807 nitrogen compound metabolic process No
GO:0016787 hydrolase activity No
GO:0019538 protein metabolic process No
GO:0008233 peptidase activity No
GO:0003674 molecular_function No
GO:0140096 catalytic activity, acting on a protein No
GO:0008152 metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 17 0.45

Transmembrane Domains

Domain # Start End Length
1 60 82 22
2 243 265 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 25.81 14.02 37.61
Initials Initials knots 23.73 12.79 34.67
Pileal_Stipeal_center Stage I stipe center 31.27 17.34 45.21
Pileal_Stipeal_shell Stage I stipe shell 31.42 17.51 45.33
DIF_stipe_center Stage II stipe center 33.64 18.90 48.38
DIF_stipe_shell Stage II stipe shell 30.20 16.77 43.62
DIF_stipe_skin Stage II stipe skin 27.75 15.24 40.26
DIF_cap_skin Stage II cap skin 31.57 17.50 45.64
DIF_cap_tissue Stage II cap tissue 34.66 19.55 49.78
DIF_gill_tissue Stage II gill tissue 38.92 22.23 55.61
YFB_stipe_center Young fruiting body stipe center 28.86 15.94 41.77
YFB_stipe_shell Young fruiting body stipe shell 29.86 16.57 43.15
YFB_stipe_skin Young fruiting body stipe skin 27.34 14.99 39.70
YFB_cap_skin Young fruiting body cap skin 27.96 15.30 40.62
YFB_cap_tissue Young fruiting body cap tissue 35.32 19.95 50.68
YFB_gill_tissue Young fruiting body gill tissue 27.05 14.83 39.28
YFB_veil Young fruiting body veil 25.27 13.71 36.84

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.212940 no
Casing YFB_stipe_center 0.831359 no
Casing YFB_stipe_shell 0.766027 no
Casing YFB_stipe_skin 0.921150 no
Casing YFB_cap_skin 0.887400 no
Casing YFB_cap_tissue 0.393588 no
Casing YFB_gill_tissue 0.937209 no
Casing YFB_veil 0.973389 no
Casing Initials 0.882157 no
Casing Pileal_Stipeal_center 0.667350 no
Casing Pileal_Stipeal_shell 0.656338 no
Casing DIF_stipe_center 0.501407 no
Casing DIF_stipe_shell 0.743491 no
Casing DIF_stipe_skin 0.899761 no
Casing DIF_cap_skin 0.643283 no
Casing DIF_cap_tissue 0.431684 no
DIF_gill_tissue YFB_stipe_center 0.404986 no
DIF_gill_tissue YFB_stipe_shell 0.480401 no
DIF_gill_tissue YFB_stipe_skin 0.285140 no
DIF_gill_tissue YFB_cap_skin 0.336318 no
DIF_gill_tissue YFB_cap_tissue 0.847493 no
DIF_gill_tissue YFB_gill_tissue 0.276817 no
DIF_gill_tissue YFB_veil 0.177565 no
YFB_stipe_center YFB_stipe_shell 0.955804 no
YFB_stipe_center YFB_stipe_skin 0.925187 no
YFB_stipe_center YFB_cap_skin 0.957828 no
YFB_stipe_center YFB_cap_tissue 0.633685 no
YFB_stipe_center YFB_gill_tissue 0.908990 no
YFB_stipe_center YFB_veil 0.792282 no
YFB_stipe_shell YFB_stipe_skin 0.871844 no
YFB_stipe_shell YFB_cap_skin 0.909322 no
YFB_stipe_shell YFB_cap_tissue 0.713907 no
YFB_stipe_shell YFB_gill_tissue 0.853437 no
YFB_stipe_shell YFB_veil 0.726861 no
YFB_stipe_skin YFB_cap_skin 0.970706 no
YFB_stipe_skin YFB_cap_tissue 0.503707 no
YFB_stipe_skin YFB_gill_tissue 0.984982 no
YFB_stipe_skin YFB_veil 0.888047 no
YFB_cap_skin YFB_cap_tissue 0.558689 no
YFB_cap_skin YFB_gill_tissue 0.956934 no
YFB_cap_skin YFB_veil 0.850538 no
YFB_cap_tissue YFB_gill_tissue 0.486632 no
YFB_cap_tissue YFB_veil 0.350755 no
YFB_gill_tissue YFB_veil 0.908044 no
Initials DIF_gill_tissue 0.109462 no
Initials YFB_stipe_center 0.655419 no
Initials YFB_stipe_shell 0.579754 no
Initials YFB_stipe_skin 0.767023 no
Initials YFB_cap_skin 0.723016 no
Initials YFB_cap_tissue 0.238763 no
Initials YFB_gill_tissue 0.788509 no
Initials YFB_veil 0.914126 no
Initials Pileal_Stipeal_center 0.480884 no
Initials Pileal_Stipeal_shell 0.469902 no
Initials DIF_stipe_center 0.321898 no
Initials DIF_stipe_shell 0.555495 no
Initials DIF_stipe_skin 0.740601 no
Initials DIF_cap_skin 0.458308 no
Initials DIF_cap_tissue 0.266041 no
Pileal_Stipeal_center DIF_gill_tissue 0.591403 no
Pileal_Stipeal_center YFB_stipe_center 0.884771 no
Pileal_Stipeal_center YFB_stipe_shell 0.939601 no
Pileal_Stipeal_center YFB_stipe_skin 0.783803 no
Pileal_Stipeal_center YFB_cap_skin 0.829855 no
Pileal_Stipeal_center YFB_cap_tissue 0.809250 no
Pileal_Stipeal_center YFB_gill_tissue 0.763373 no
Pileal_Stipeal_center YFB_veil 0.630185 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.993155 no
Pileal_Stipeal_center DIF_stipe_center 0.898576 no
Pileal_Stipeal_center DIF_stipe_shell 0.953994 no
Pileal_Stipeal_center DIF_stipe_skin 0.816081 no
Pileal_Stipeal_center DIF_cap_skin 0.987729 no
Pileal_Stipeal_center DIF_cap_tissue 0.845344 no
Pileal_Stipeal_shell DIF_gill_tissue 0.596031 no
Pileal_Stipeal_shell YFB_stipe_center 0.873971 no
Pileal_Stipeal_shell YFB_stipe_shell 0.932990 no
Pileal_Stipeal_shell YFB_stipe_skin 0.772359 no
Pileal_Stipeal_shell YFB_cap_skin 0.819421 no
Pileal_Stipeal_shell YFB_cap_tissue 0.816174 no
Pileal_Stipeal_shell YFB_gill_tissue 0.752563 no
Pileal_Stipeal_shell YFB_veil 0.613707 no
Pileal_Stipeal_shell DIF_stipe_center 0.905826 no
Pileal_Stipeal_shell DIF_stipe_shell 0.947512 no
Pileal_Stipeal_shell DIF_stipe_skin 0.805181 no
Pileal_Stipeal_shell DIF_cap_skin 0.993411 no
Pileal_Stipeal_shell DIF_cap_tissue 0.851371 no
DIF_stipe_center DIF_gill_tissue 0.744211 no
DIF_stipe_center YFB_stipe_center 0.734866 no
DIF_stipe_center YFB_stipe_shell 0.809052 no
DIF_stipe_center YFB_stipe_skin 0.615356 no
DIF_stipe_center YFB_cap_skin 0.666104 no
DIF_stipe_center YFB_cap_tissue 0.931458 no
DIF_stipe_center YFB_gill_tissue 0.595013 no
DIF_stipe_center YFB_veil 0.450943 no
DIF_stipe_center DIF_stipe_shell 0.831754 no
DIF_stipe_center DIF_stipe_skin 0.650521 no
DIF_stipe_center DIF_cap_skin 0.908592 no
DIF_stipe_center DIF_cap_tissue 0.959159 no
DIF_stipe_shell DIF_gill_tissue 0.507188 no
DIF_stipe_shell YFB_stipe_center 0.939287 no
DIF_stipe_shell YFB_stipe_shell 0.985137 no
DIF_stipe_shell YFB_stipe_skin 0.851914 no
DIF_stipe_shell YFB_cap_skin 0.891292 no
DIF_stipe_shell YFB_cap_tissue 0.737785 no
DIF_stipe_shell YFB_gill_tissue 0.832782 no
DIF_stipe_shell YFB_veil 0.700323 no
DIF_stipe_shell DIF_stipe_skin 0.878139 no
DIF_stipe_shell DIF_cap_skin 0.940274 no
DIF_stipe_shell DIF_cap_tissue 0.776122 no
DIF_stipe_skin DIF_gill_tissue 0.327027 no
DIF_stipe_skin YFB_stipe_center 0.948233 no
DIF_stipe_skin YFB_stipe_shell 0.898110 no
DIF_stipe_skin YFB_stipe_skin 0.980520 no
DIF_stipe_skin YFB_cap_skin 0.989199 no
DIF_stipe_skin YFB_cap_tissue 0.548260 no
DIF_stipe_skin YFB_gill_tissue 0.966507 no
DIF_stipe_skin YFB_veil 0.865648 no
DIF_stipe_skin DIF_cap_skin 0.798431 no
DIF_stipe_skin DIF_cap_tissue 0.592080 no
DIF_cap_skin DIF_gill_tissue 0.611568 no
DIF_cap_skin YFB_stipe_center 0.868901 no
DIF_cap_skin YFB_stipe_shell 0.926693 no
DIF_cap_skin YFB_stipe_skin 0.763293 no
DIF_cap_skin YFB_cap_skin 0.810817 no
DIF_cap_skin YFB_cap_tissue 0.824493 no
DIF_cap_skin YFB_gill_tissue 0.742098 no
DIF_cap_skin YFB_veil 0.607681 no
DIF_cap_skin DIF_cap_tissue 0.861032 no
DIF_cap_tissue DIF_gill_tissue 0.811140 no
DIF_cap_tissue YFB_stipe_center 0.673257 no
DIF_cap_tissue YFB_stipe_shell 0.750227 no
DIF_cap_tissue YFB_stipe_skin 0.545703 no
DIF_cap_tissue YFB_cap_skin 0.597303 no
DIF_cap_tissue YFB_cap_tissue 0.975209 no
DIF_cap_tissue YFB_gill_tissue 0.525485 no
DIF_cap_tissue YFB_veil 0.390088 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|027020
MPSWRVSSMFRPLLTASRLTYRIPKRELWTTIPKRNRYVRFSDGNAGRPSPNNQPGWRKFSPPVTYGAVIFAGIG
VFYVTHLEQVPQTGRWRFMIFSSRSEAQIGESVRQETKNEWGNKILPPNHPLSLHVRKVTSRILKSSDLGHIIGE
APTPPPISPFGFADEVWKPSDDYGAAASYTYSPQKEWDVVVVNDKRVVNAMATPGLILVFTGILPVCRDEQGLAA
VLSHEIGHVVARHSAERLSSGAFFMAISFFLQITGLDVIGFTPFINHFLLELPNSRTQEYEADLIGVRLMSRACY
DPAEMVQMFKRLEAATGSNRVDFLATHPSTGQRIKQLEETLPDAYSILASNPECAALRDKLEQFGNRTMPIRVND
FGEIEHV*
Coding >AgabiH97|027020
ATGCCGAGTTGGCGCGTCTCTTCCATGTTCAGACCACTTTTGACTGCCTCAAGACTTACTTATCGTATACCCAAA
AGAGAACTATGGACAACCATTCCGAAACGCAATCGTTATGTTCGCTTCTCTGACGGAAATGCCGGCCGACCTTCG
CCGAATAATCAGCCTGGGTGGCGCAAGTTCAGCCCACCAGTCACATACGGTGCTGTAATCTTTGCTGGTATAGGC
GTCTTCTATGTAACACATTTAGAACAGGTACCTCAGACTGGCCGGTGGCGCTTTATGATCTTCAGTAGTAGATCT
GAAGCTCAGATCGGCGAAAGTGTACGTCAGGAAACGAAAAACGAATGGGGTAATAAGATCCTACCCCCCAACCAT
CCATTATCCCTTCATGTGCGAAAGGTCACATCTCGCATTCTAAAGTCGTCCGACCTTGGTCATATTATAGGAGAA
GCTCCTACACCTCCGCCAATTTCCCCTTTCGGTTTCGCAGACGAAGTCTGGAAGCCGTCAGACGACTACGGCGCG
GCTGCAAGTTATACGTATAGTCCTCAGAAAGAATGGGATGTTGTAGTTGTAAATGATAAAAGAGTGGTCAACGCG
ATGGCTACACCTGGCTTGATTCTGGTATTTACTGGGATATTACCTGTATGTCGCGATGAGCAGGGACTCGCTGCT
GTTTTATCACATGAAATCGGTCATGTAGTTGCTCGCCATTCAGCCGAGCGTCTATCCTCAGGCGCATTCTTCATG
GCTATCTCATTCTTTTTACAGATCACTGGGCTTGATGTTATTGGTTTCACACCCTTCATCAATCATTTCCTCCTC
GAGCTCCCCAATTCCCGCACACAAGAATATGAAGCTGATCTCATCGGTGTTCGACTTATGTCTCGTGCTTGCTAT
GATCCTGCTGAGATGGTACAGATGTTTAAACGCCTCGAAGCGGCCACAGGATCCAACAGAGTAGACTTTCTAGCA
ACTCATCCATCAACTGGCCAACGCATCAAGCAACTTGAAGAAACGCTTCCGGATGCATATTCTATTCTTGCCTCA
AATCCGGAATGTGCAGCTTTAAGAGATAAATTAGAACAATTTGGGAATCGCACGATGCCAATTCGGGTTAATGAC
TTTGGAGAAATAGAACATGTGTAA
Transcript >AgabiH97|027020
ATGCCGAGTTGGCGCGTCTCTTCCATGTTCAGACCACTTTTGACTGCCTCAAGACTTACTTATCGTATACCCAAA
AGAGAACTATGGACAACCATTCCGAAACGCAATCGTTATGTTCGCTTCTCTGACGGAAATGCCGGCCGACCTTCG
CCGAATAATCAGCCTGGGTGGCGCAAGTTCAGCCCACCAGTCACATACGGTGCTGTAATCTTTGCTGGTATAGGC
GTCTTCTATGTAACACATTTAGAACAGGTACCTCAGACTGGCCGGTGGCGCTTTATGATCTTCAGTAGTAGATCT
GAAGCTCAGATCGGCGAAAGTGTACGTCAGGAAACGAAAAACGAATGGGGTAATAAGATCCTACCCCCCAACCAT
CCATTATCCCTTCATGTGCGAAAGGTCACATCTCGCATTCTAAAGTCGTCCGACCTTGGTCATATTATAGGAGAA
GCTCCTACACCTCCGCCAATTTCCCCTTTCGGTTTCGCAGACGAAGTCTGGAAGCCGTCAGACGACTACGGCGCG
GCTGCAAGTTATACGTATAGTCCTCAGAAAGAATGGGATGTTGTAGTTGTAAATGATAAAAGAGTGGTCAACGCG
ATGGCTACACCTGGCTTGATTCTGGTATTTACTGGGATATTACCTGTATGTCGCGATGAGCAGGGACTCGCTGCT
GTTTTATCACATGAAATCGGTCATGTAGTTGCTCGCCATTCAGCCGAGCGTCTATCCTCAGGCGCATTCTTCATG
GCTATCTCATTCTTTTTACAGATCACTGGGCTTGATGTTATTGGTTTCACACCCTTCATCAATCATTTCCTCCTC
GAGCTCCCCAATTCCCGCACACAAGAATATGAAGCTGATCTCATCGGTGTTCGACTTATGTCTCGTGCTTGCTAT
GATCCTGCTGAGATGGTACAGATGTTTAAACGCCTCGAAGCGGCCACAGGATCCAACAGAGTAGACTTTCTAGCA
ACTCATCCATCAACTGGCCAACGCATCAAGCAACTTGAAGAAACGCTTCCGGATGCATATTCTATTCTTGCCTCA
AATCCGGAATGTGCAGCTTTAAGAGATAAATTAGAACAATTTGGGAATCGCACGATGCCAATTCGGGTTAATGAC
TTTGGAGAAATAGAACATGTGTAA
Gene >AgabiH97|027020
ATGCCGAGTTGGCGCGTCTCTTCCATGTTCAGACCACTTTTGACTGCCTCAAGACTTACTTATCGTATACCCAAA
AGAGAACTATGGACAACCATTCCGAAACGCAATCGTTATGTTCGCTTCTCTGACGGAAATGCCGGCCGACCTTCG
CCGAATAATCAGCCTGGGTGGCGCAAGTTCAGCCCACCAGTCACATACGGTGCTGTAATCTTTGCTGGTATAGGC
GTCTTCTATGTAACACAGTGCGCTTTTTTTTGCTGCTCGAGTTGAAAGCTTCTCTCAATTTACAAAGTTTAGAAC
AGGTACCTCAGACTGGCCGGTGGCGCTTTATGATCTTCAGTAGTAGATCTGAAGCTCAGGTATACAGCTCTTCTT
CTTCATTCGCAAGCAACCTTAACGTGTAGTTTAGATCGGCGAAAGTGTACGTCAGGAAACGAAAAACGAATGGGG
TAATAAGATCCTACCCCCCAACCATCCATTATCCCTTCATGTGCGAAAGGTCACATCTCGCATTCTAAAGTCGTC
CGACCTTGGTCATATTATAGGAGAAGCTCCTACACCTCCGCCAATTTCCCCTTTCGGTTTCGCAGACGAAGTCTG
GAAGCCGTCAGACGACTACGGCGCGGCTGCAAGTTATACGTATAGTCCTCAGAAAGAATGGGATGTTGTAGTTGT
AAATGATAAAAGAGTGGTCAACGCGATGGCTACACCTGGTAGGTTGCATCATAAGGTCCTTGTGATTATCGGGAA
CTTACCGCTTTCTAGGCTTGATTCTGGTATTTACTGGGATATTACCTGTATGTCGCGATGAGCAGGGACTCGCTG
CTGTTTTATCACATGGTCCGCTCTCCTCCTAGACCACTTGATGCCCACCTCTCTTATCATCTTGTCCAGAAATCG
GTCATGTAGTTGCTCGCCATTCAGCCGAGCGTCTATCCTCAGGCGCATTCTTCATGGCTATCTCATTCTTTTTAC
AGATCACTGGGCTTGATGTTATTGGTTTCACACCCTTCATCAATCATTTCCTCCTCGAGCTCCCCAATTCCCGCA
CACAAGAATATGAAGGTAATATTGATCCTTTTCAATCACCTTTTCGTAATGTTAATACATCGTTGACATTTCGTT
TAGCTGATCTCATCGGTGTTCGACTTATGTCTCGTGCTTGCTATGATCCTGCTGAGATGGTACAGTACGTTACTT
TTCCATCATGGCCAACGGATCAATCATTAACTCATATTACTCGCCTTCAAATTAACAGGATGTTTAAACGCCTCG
AAGCGGCCACAGGATCCAACAGAGTAGACTTTCTAGCAACTCATCCATCAACTGGCCAACGCATCAAGGTTAGAC
AACTGAACTCCATGAAAGTCTCAAAAGAGTCCTCACTCATTCTTTTTCTTTCATTATAGCAACTTGAAGAAACGC
TTCCGGATGCATATTCTATTCTTGCCTCAAATCCGGAATGTGCAGCTTTAAGAGATAAATTAGAACAATTTGGGA
ATCGCACGATGCCAATTCGGGTTAATGACTTTGGAGAAATAGAACATGTGTAA

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