Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|026980
Gene name
Locationscaffold_11:1380873..1382223
Strand+
Gene length (bp)1350
Transcript length (bp)987
Coding sequence length (bp)987
Protein length (aa) 329

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Lysosome/Vacuole Signal peptide|Transmembrane domain 0.1033 0.1261 0.3665 0.4643 0.1773 0.0091 0.1927 0.6606 0.2882 0.0295

SignalP

SignalP signal predicted Location Score
Yes 1 - 21 0.999755

Transmembrane Domains

Domain # Start End Length
1 266 288 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup711
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|026520
Agaricus bisporus var bisporus H39 AgabiH39|026980
Agaricus bisporus var bisporus H97 AgabiH97|026520
Agaricus bisporus var bisporus H97 AgabiH97|026980 (this protein)
Rhodonia placenta FPRL280 RhoplFPRL280|344_6

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|026980
MPFSIRLPTFIVSILGLQALGQNSRLTFEWNFGGDVVGWSLPICQEIPITVSPDHLNATAGNFAGIPPYYMIAFP
QNGLQPTTRFVGNNTDTLTWTPTHPVGTTFMLQLMDSTGSTGGATDIWKVTKSTTGNTDCAAPPPPAYFFVSSNM
TEDGERTLETCEPWRLNINGGEPPYTVVLTATNSPVLTNVTVPEGNNALVYVNRADPNTVLFAGAVDRFGRWATG
TQSIKTSGSTDYTCIGFRTIATTQEELDILNPKEFKRKRRLLAIACISAGLFSLMLVVGGFGISSNLRQKKLTKR
KHLKLVSDNRHSLSSLSLSQTQSSSLAT*
Coding >AgabiH97|026980
ATGCCTTTCTCAATCAGATTACCAACCTTTATCGTTTCGATCCTTGGTCTGCAAGCGTTGGGACAAAATTCTAGA
TTAACGTTTGAGTGGAATTTTGGCGGCGACGTTGTCGGTTGGTCCTTACCGATATGTCAGGAAATTCCTATCACT
GTCTCCCCTGATCACCTCAACGCGACTGCCGGAAATTTCGCTGGCATCCCACCATATTATATGATCGCTTTTCCT
CAAAATGGACTCCAACCTACCACTAGATTTGTAGGAAACAACACTGACACGCTGACATGGACTCCGACTCACCCT
GTTGGAACGACTTTCATGTTACAGCTAATGGATTCCACAGGGAGCACAGGCGGTGCCACCGATATATGGAAAGTC
ACCAAAAGCACTACTGGCAATACTGACTGCGCCGCCCCTCCACCTCCTGCCTACTTCTTCGTCTCCTCAAATATG
ACTGAGGATGGTGAGAGAACCCTGGAGACATGTGAACCTTGGAGATTAAATATAAATGGCGGAGAGCCTCCCTAT
ACGGTCGTGCTTACGGCCACTAACAGTCCTGTGTTGACGAATGTCACTGTACCGGAAGGCAACAATGCGTTGGTT
TATGTTAACCGTGCTGACCCAAATACTGTCCTCTTTGCCGGTGCAGTCGACAGGTTCGGGCGATGGGCTACTGGA
ACGCAATCTATCAAAACTAGTGGATCAACAGACTATACTTGTATTGGTTTCAGGACCATAGCTACCACACAAGAA
GAACTCGATATACTCAATCCGAAAGAATTCAAGCGTAAAAGGCGCCTTCTAGCAATTGCTTGCATTAGTGCCGGA
TTGTTTTCGCTCATGCTGGTCGTTGGAGGATTCGGGATTTCGTCGAATTTACGACAGAAGAAGTTGACAAAAAGG
AAACATCTGAAATTAGTCAGCGATAATCGTCATTCTCTTTCGTCTCTTTCTCTATCACAGACTCAATCGTCGTCG
CTTGCTACATGA
Transcript >AgabiH97|026980
ATGCCTTTCTCAATCAGATTACCAACCTTTATCGTTTCGATCCTTGGTCTGCAAGCGTTGGGACAAAATTCTAGA
TTAACGTTTGAGTGGAATTTTGGCGGCGACGTTGTCGGTTGGTCCTTACCGATATGTCAGGAAATTCCTATCACT
GTCTCCCCTGATCACCTCAACGCGACTGCCGGAAATTTCGCTGGCATCCCACCATATTATATGATCGCTTTTCCT
CAAAATGGACTCCAACCTACCACTAGATTTGTAGGAAACAACACTGACACGCTGACATGGACTCCGACTCACCCT
GTTGGAACGACTTTCATGTTACAGCTAATGGATTCCACAGGGAGCACAGGCGGTGCCACCGATATATGGAAAGTC
ACCAAAAGCACTACTGGCAATACTGACTGCGCCGCCCCTCCACCTCCTGCCTACTTCTTCGTCTCCTCAAATATG
ACTGAGGATGGTGAGAGAACCCTGGAGACATGTGAACCTTGGAGATTAAATATAAATGGCGGAGAGCCTCCCTAT
ACGGTCGTGCTTACGGCCACTAACAGTCCTGTGTTGACGAATGTCACTGTACCGGAAGGCAACAATGCGTTGGTT
TATGTTAACCGTGCTGACCCAAATACTGTCCTCTTTGCCGGTGCAGTCGACAGGTTCGGGCGATGGGCTACTGGA
ACGCAATCTATCAAAACTAGTGGATCAACAGACTATACTTGTATTGGTTTCAGGACCATAGCTACCACACAAGAA
GAACTCGATATACTCAATCCGAAAGAATTCAAGCGTAAAAGGCGCCTTCTAGCAATTGCTTGCATTAGTGCCGGA
TTGTTTTCGCTCATGCTGGTCGTTGGAGGATTCGGGATTTCGTCGAATTTACGACAGAAGAAGTTGACAAAAAGG
AAACATCTGAAATTAGTCAGCGATAATCGTCATTCTCTTTCGTCTCTTTCTCTATCACAGACTCAATCGTCGTCG
CTTGCTACATGA
Gene >AgabiH97|026980
ATGCCTTTCTCAATCAGATTACCAACCTTTATCGTTTCGATCCTTGGTCTGCAAGCGTTGGGACAAAATTCTAGA
TTAACGTTTGAGTGGAATTTTGGCGGCGACGTTGTGAGTCCATTTTATTTCCTCAGTCACTGACCAAGTACCAGT
AATACTAATTACCAGATCCTAGGTCGGTTGGTCCTTACCGATATGTCAGGAAATTCCTATCACTGTCTCCCCTGA
TCACCTCAACGCGACTGCCGGAAATTTCGCTGGCATCCCACCATATTATATGATCGCTTTTCCTCAAAATGGACT
CCAACCTACCACTAGATTTGTAGGAAACAACACTGACACGCTGACATGGACTCCGACTCACCCTGTTGGTCAGTG
ACGTGCGTAACAAGGAATTGCAATTACTTATGAAAGATACTCTAGGAACGACTTTCATGTTACAGCTAATGGATT
CCACAGGGAGCACAGGCGGTGCCACCGATATATGGAAAGTCACCAAAAGTGAGTTTCTGAATGGATCTGACTCAA
CGAATATTAATGTGAAGTCGATTGGGAAAGGCACTACTGGCAATACTGACTGCGCCGCCCCTCCACCTCCTGCCT
ACTTCTTCGTCTCCTCAAATATGACTGAGGATGGTGAGAGAACCCTGGAGACATGTGAACCTTGGAGATTAAATA
TAAATGGCGGAGAGCCTCCCTATACGGTCGTGCTTACGGCCACTAACAGTCCTGTGTTGACGAATGTCACTGTAC
CGGAAGGCAACAATGCGTTGGTTTATGTTAACCGTGCTGACCCAAATACTGTCCTCTTTGGTATGTACCACTATT
ACTCTTTATATATTATAGCTTGACGATCATACTCATTCTCGCTGTAGCCGGTGCAGTCGACAGGTGAGCTGTCAA
TTCGAGAAGAAAAAAGAAATGACAATTGGATAAAACATAAATTTTTCTAGGTTCGGGCGATGGGCTACTGGAACG
CAATCTATCAAAACTAGTGGTGAGAATACCGACCTAATCGACATACTGTGAATTCTTAAATTTCTTCGCCCTATA
ATGGTTTTAGGATCAACAGACTATACTTGTATTGGTTTCAGGACCATAGCTACCACACAAGAAGAACTCGATATA
CTCAATCCGAAAGAATTCAAGCGTAAAAGGCGCCTTCTAGCAATTGCTTGCATTAGTGCCGGATTGTTTTCGCTC
ATGCTGGTCGTTGGAGGATTCGGGATTTCGTCGAATTTACGACAGAAGAAGTTGACAAAAAGGAAACATCTGAAA
TTAGTCAGCGATAATCGTCATTCTCTTTCGTCTCTTTCTCTATCACAGACTCAATCGTCGTCGCTTGCTACATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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