Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|026840
Gene name
Locationscaffold_11:1348192..1348990
Strand+
Gene length (bp)798
Transcript length (bp)798
Coding sequence length (bp)798
Protein length (aa) 266

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01926 MMR_HSR1 50S ribosome-binding GTPase 1.5E-08 5 101
PF00071 Ras Ras family 5.8E-06 6 65

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q9UTE7|MSS1_SCHPO tRNA modification GTPase mss1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mss1 PE=3 SV=1 5 156 6.0E-06

GO

GO Term Description Terminal node
GO:0005525 GTP binding Yes
GO:0003924 GTPase activity Yes
GO:0097367 carbohydrate derivative binding No
GO:0032561 guanyl ribonucleotide binding No
GO:0036094 small molecule binding No
GO:0019001 guanyl nucleotide binding No
GO:1901363 heterocyclic compound binding No
GO:0016787 hydrolase activity No
GO:0005488 binding No
GO:0043167 ion binding No
GO:0016462 pyrophosphatase activity No
GO:0043168 anion binding No
GO:0097159 organic cyclic compound binding No
GO:0017111 nucleoside-triphosphatase activity No
GO:0017076 purine nucleotide binding No
GO:0035639 purine ribonucleoside triphosphate binding No
GO:0003674 molecular_function No
GO:1901265 nucleoside phosphate binding No
GO:0032553 ribonucleotide binding No
GO:0003824 catalytic activity No
GO:0016817 hydrolase activity, acting on acid anhydrides No
GO:0032555 purine ribonucleotide binding No
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides No
GO:0000166 nucleotide binding No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 18 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|026840
MSSRNVILFGESGSGKSSIVNMLSNDGHLATVSSGAMGCTFESRPFDVDIHGVPMTLWDTAGLDEGDAGRVPKSD
AIVQLYNLVRYLSAGVSLLMFVMRAPRIKSSVPQNWKLFHEVICQLKVPIVIAITGLEDLDDMDQWWRDNKGVFQ
KYGITPVGSACITASRGKKRGEGHMFDHEYEESRKKVRNLISASHLEVPWKVPAAEWYKIIINEIVETESSCFKS
KEIRRQEYQTVFGEAYSKLTKVCEMSESDAQELAKRLRGT*
Coding >AgabiH97|026840
ATGAGCAGTAGAAACGTCATCCTTTTCGGTGAATCTGGCAGTGGGAAGAGCAGCATTGTCAACATGCTCTCGAAC
GATGGACACCTCGCCACCGTCTCTAGCGGGGCTATGGGTTGCACATTCGAGAGCCGCCCCTTCGACGTTGACATT
CACGGAGTTCCCATGACACTTTGGGACACGGCCGGCCTTGATGAGGGCGATGCAGGTCGTGTCCCGAAGTCAGAT
GCCATTGTACAGCTCTATAACCTGGTTCGATATCTTTCTGCCGGCGTCAGCCTTCTGATGTTTGTCATGCGTGCA
CCTCGTATCAAGAGTTCTGTTCCTCAAAACTGGAAATTATTCCACGAAGTCATCTGCCAGCTCAAGGTGCCGATT
GTGATTGCGATCACGGGGTTGGAGGACCTAGATGACATGGACCAATGGTGGCGCGACAACAAGGGGGTATTCCAG
AAGTATGGAATCACTCCTGTTGGGTCGGCGTGTATTACAGCTTCACGAGGAAAGAAGCGTGGAGAGGGGCACATG
TTTGACCATGAGTACGAAGAATCTAGGAAGAAGGTTCGAAATCTCATTAGTGCGTCACACTTGGAGGTCCCTTGG
AAGGTCCCTGCCGCAGAGTGGTACAAAATCATCATCAACGAGATTGTCGAAACGGAGAGCAGTTGCTTTAAATCA
AAGGAGATCAGGCGCCAAGAATATCAGACAGTCTTCGGGGAAGCTTATTCTAAGCTCACTAAGGTATGTGAGATG
TCTGAAAGCGATGCTCAAGAATTGGCGAAGAGGTTACGAGGGACGTAA
Transcript >AgabiH97|026840
ATGAGCAGTAGAAACGTCATCCTTTTCGGTGAATCTGGCAGTGGGAAGAGCAGCATTGTCAACATGCTCTCGAAC
GATGGACACCTCGCCACCGTCTCTAGCGGGGCTATGGGTTGCACATTCGAGAGCCGCCCCTTCGACGTTGACATT
CACGGAGTTCCCATGACACTTTGGGACACGGCCGGCCTTGATGAGGGCGATGCAGGTCGTGTCCCGAAGTCAGAT
GCCATTGTACAGCTCTATAACCTGGTTCGATATCTTTCTGCCGGCGTCAGCCTTCTGATGTTTGTCATGCGTGCA
CCTCGTATCAAGAGTTCTGTTCCTCAAAACTGGAAATTATTCCACGAAGTCATCTGCCAGCTCAAGGTGCCGATT
GTGATTGCGATCACGGGGTTGGAGGACCTAGATGACATGGACCAATGGTGGCGCGACAACAAGGGGGTATTCCAG
AAGTATGGAATCACTCCTGTTGGGTCGGCGTGTATTACAGCTTCACGAGGAAAGAAGCGTGGAGAGGGGCACATG
TTTGACCATGAGTACGAAGAATCTAGGAAGAAGGTTCGAAATCTCATTAGTGCGTCACACTTGGAGGTCCCTTGG
AAGGTCCCTGCCGCAGAGTGGTACAAAATCATCATCAACGAGATTGTCGAAACGGAGAGCAGTTGCTTTAAATCA
AAGGAGATCAGGCGCCAAGAATATCAGACAGTCTTCGGGGAAGCTTATTCTAAGCTCACTAAGGTATGTGAGATG
TCTGAAAGCGATGCTCAAGAATTGGCGAAGAGGTTACGAGGGACGTAA
Gene >AgabiH97|026840
ATGAGCAGTAGAAACGTCATCCTTTTCGGTGAATCTGGCAGTGGGAAGAGCAGCATTGTCAACATGCTCTCGAAC
GATGGACACCTCGCCACCGTCTCTAGCGGGGCTATGGGTTGCACATTCGAGAGCCGCCCCTTCGACGTTGACATT
CACGGAGTTCCCATGACACTTTGGGACACGGCCGGCCTTGATGAGGGCGATGCAGGTCGTGTCCCGAAGTCAGAT
GCCATTGTACAGCTCTATAACCTGGTTCGATATCTTTCTGCCGGCGTCAGCCTTCTGATGTTTGTCATGCGTGCA
CCTCGTATCAAGAGTTCTGTTCCTCAAAACTGGAAATTATTCCACGAAGTCATCTGCCAGCTCAAGGTGCCGATT
GTGATTGCGATCACGGGGTTGGAGGACCTAGATGACATGGACCAATGGTGGCGCGACAACAAGGGGGTATTCCAG
AAGTATGGAATCACTCCTGTTGGGTCGGCGTGTATTACAGCTTCACGAGGAAAGAAGCGTGGAGAGGGGCACATG
TTTGACCATGAGTACGAAGAATCTAGGAAGAAGGTTCGAAATCTCATTAGTGCGTCACACTTGGAGGTCCCTTGG
AAGGTCCCTGCCGCAGAGTGGTACAAAATCATCATCAACGAGATTGTCGAAACGGAGAGCAGTTGCTTTAAATCA
AAGGAGATCAGGCGCCAAGAATATCAGACAGTCTTCGGGGAAGCTTATTCTAAGCTCACTAAGGTATGTGAGATG
TCTGAAAGCGATGCTCAAGAATTGGCGAAGAGGTTACGAGGGACGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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