© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|026840 |
| Gene name | |
| Location | scaffold_11:1348192..1348990 |
| Strand | + |
| Gene length (bp) | 798 |
| Transcript length (bp) | 798 |
| Coding sequence length (bp) | 798 |
| Protein length (aa) | 266 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01926 | MMR_HSR1 | 50S ribosome-binding GTPase | 1.5E-08 | 5 | 101 |
| PF00071 | Ras | Ras family | 5.8E-06 | 6 | 65 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9UTE7|MSS1_SCHPO | tRNA modification GTPase mss1, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mss1 PE=3 SV=1 | 5 | 156 | 6.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005525 | GTP binding | Yes |
| GO:0003924 | GTPase activity | Yes |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0043168 | anion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0003674 | molecular_function | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0000166 | nucleotide binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|026840 MSSRNVILFGESGSGKSSIVNMLSNDGHLATVSSGAMGCTFESRPFDVDIHGVPMTLWDTAGLDEGDAGRVPKSD AIVQLYNLVRYLSAGVSLLMFVMRAPRIKSSVPQNWKLFHEVICQLKVPIVIAITGLEDLDDMDQWWRDNKGVFQ KYGITPVGSACITASRGKKRGEGHMFDHEYEESRKKVRNLISASHLEVPWKVPAAEWYKIIINEIVETESSCFKS KEIRRQEYQTVFGEAYSKLTKVCEMSESDAQELAKRLRGT* |
| Coding | >AgabiH97|026840 ATGAGCAGTAGAAACGTCATCCTTTTCGGTGAATCTGGCAGTGGGAAGAGCAGCATTGTCAACATGCTCTCGAAC GATGGACACCTCGCCACCGTCTCTAGCGGGGCTATGGGTTGCACATTCGAGAGCCGCCCCTTCGACGTTGACATT CACGGAGTTCCCATGACACTTTGGGACACGGCCGGCCTTGATGAGGGCGATGCAGGTCGTGTCCCGAAGTCAGAT GCCATTGTACAGCTCTATAACCTGGTTCGATATCTTTCTGCCGGCGTCAGCCTTCTGATGTTTGTCATGCGTGCA CCTCGTATCAAGAGTTCTGTTCCTCAAAACTGGAAATTATTCCACGAAGTCATCTGCCAGCTCAAGGTGCCGATT GTGATTGCGATCACGGGGTTGGAGGACCTAGATGACATGGACCAATGGTGGCGCGACAACAAGGGGGTATTCCAG AAGTATGGAATCACTCCTGTTGGGTCGGCGTGTATTACAGCTTCACGAGGAAAGAAGCGTGGAGAGGGGCACATG TTTGACCATGAGTACGAAGAATCTAGGAAGAAGGTTCGAAATCTCATTAGTGCGTCACACTTGGAGGTCCCTTGG AAGGTCCCTGCCGCAGAGTGGTACAAAATCATCATCAACGAGATTGTCGAAACGGAGAGCAGTTGCTTTAAATCA AAGGAGATCAGGCGCCAAGAATATCAGACAGTCTTCGGGGAAGCTTATTCTAAGCTCACTAAGGTATGTGAGATG TCTGAAAGCGATGCTCAAGAATTGGCGAAGAGGTTACGAGGGACGTAA |
| Transcript | >AgabiH97|026840 ATGAGCAGTAGAAACGTCATCCTTTTCGGTGAATCTGGCAGTGGGAAGAGCAGCATTGTCAACATGCTCTCGAAC GATGGACACCTCGCCACCGTCTCTAGCGGGGCTATGGGTTGCACATTCGAGAGCCGCCCCTTCGACGTTGACATT CACGGAGTTCCCATGACACTTTGGGACACGGCCGGCCTTGATGAGGGCGATGCAGGTCGTGTCCCGAAGTCAGAT GCCATTGTACAGCTCTATAACCTGGTTCGATATCTTTCTGCCGGCGTCAGCCTTCTGATGTTTGTCATGCGTGCA CCTCGTATCAAGAGTTCTGTTCCTCAAAACTGGAAATTATTCCACGAAGTCATCTGCCAGCTCAAGGTGCCGATT GTGATTGCGATCACGGGGTTGGAGGACCTAGATGACATGGACCAATGGTGGCGCGACAACAAGGGGGTATTCCAG AAGTATGGAATCACTCCTGTTGGGTCGGCGTGTATTACAGCTTCACGAGGAAAGAAGCGTGGAGAGGGGCACATG TTTGACCATGAGTACGAAGAATCTAGGAAGAAGGTTCGAAATCTCATTAGTGCGTCACACTTGGAGGTCCCTTGG AAGGTCCCTGCCGCAGAGTGGTACAAAATCATCATCAACGAGATTGTCGAAACGGAGAGCAGTTGCTTTAAATCA AAGGAGATCAGGCGCCAAGAATATCAGACAGTCTTCGGGGAAGCTTATTCTAAGCTCACTAAGGTATGTGAGATG TCTGAAAGCGATGCTCAAGAATTGGCGAAGAGGTTACGAGGGACGTAA |
| Gene | >AgabiH97|026840 ATGAGCAGTAGAAACGTCATCCTTTTCGGTGAATCTGGCAGTGGGAAGAGCAGCATTGTCAACATGCTCTCGAAC GATGGACACCTCGCCACCGTCTCTAGCGGGGCTATGGGTTGCACATTCGAGAGCCGCCCCTTCGACGTTGACATT CACGGAGTTCCCATGACACTTTGGGACACGGCCGGCCTTGATGAGGGCGATGCAGGTCGTGTCCCGAAGTCAGAT GCCATTGTACAGCTCTATAACCTGGTTCGATATCTTTCTGCCGGCGTCAGCCTTCTGATGTTTGTCATGCGTGCA CCTCGTATCAAGAGTTCTGTTCCTCAAAACTGGAAATTATTCCACGAAGTCATCTGCCAGCTCAAGGTGCCGATT GTGATTGCGATCACGGGGTTGGAGGACCTAGATGACATGGACCAATGGTGGCGCGACAACAAGGGGGTATTCCAG AAGTATGGAATCACTCCTGTTGGGTCGGCGTGTATTACAGCTTCACGAGGAAAGAAGCGTGGAGAGGGGCACATG TTTGACCATGAGTACGAAGAATCTAGGAAGAAGGTTCGAAATCTCATTAGTGCGTCACACTTGGAGGTCCCTTGG AAGGTCCCTGCCGCAGAGTGGTACAAAATCATCATCAACGAGATTGTCGAAACGGAGAGCAGTTGCTTTAAATCA AAGGAGATCAGGCGCCAAGAATATCAGACAGTCTTCGGGGAAGCTTATTCTAAGCTCACTAAGGTATGTGAGATG TCTGAAAGCGATGCTCAAGAATTGGCGAAGAGGTTACGAGGGACGTAA |