© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|026830 |
| Gene name | |
| Location | scaffold_11:1346195..1347451 |
| Strand | - |
| Gene length (bp) | 1256 |
| Transcript length (bp) | 1092 |
| Coding sequence length (bp) | 1092 |
| Protein length (aa) | 364 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01926 | MMR_HSR1 | 50S ribosome-binding GTPase | 1.5E-09 | 106 | 205 |
| PF00071 | Ras | Ras family | 1.4E-04 | 107 | 165 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9JXL4|MNME_NEIMB | tRNA modification GTPase MnmE OS=Neisseria meningitidis serogroup B (strain MC58) GN=mnmE PE=3 SV=1 | 106 | 165 | 1.0E-07 |
| sp|A1KW66|MNME_NEIMF | tRNA modification GTPase MnmE OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18) GN=mnmE PE=3 SV=1 | 106 | 165 | 1.0E-07 |
| sp|A9M0N5|MNME_NEIM0 | tRNA modification GTPase MnmE OS=Neisseria meningitidis serogroup C (strain 053442) GN=mnmE PE=3 SV=1 | 106 | 165 | 1.0E-07 |
| sp|Q9JWB7|MNME_NEIMA | tRNA modification GTPase MnmE OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=mnmE PE=3 SV=1 | 106 | 165 | 1.0E-07 |
| sp|B4RRB9|MNME_NEIG2 | tRNA modification GTPase MnmE OS=Neisseria gonorrhoeae (strain NCCP11945) GN=mnmE PE=3 SV=1 | 106 | 165 | 2.0E-07 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|Q9JXL4|MNME_NEIMB | tRNA modification GTPase MnmE OS=Neisseria meningitidis serogroup B (strain MC58) GN=mnmE PE=3 SV=1 | 106 | 165 | 1.0E-07 |
| sp|A1KW66|MNME_NEIMF | tRNA modification GTPase MnmE OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / DSM 15464 / FAM18) GN=mnmE PE=3 SV=1 | 106 | 165 | 1.0E-07 |
| sp|A9M0N5|MNME_NEIM0 | tRNA modification GTPase MnmE OS=Neisseria meningitidis serogroup C (strain 053442) GN=mnmE PE=3 SV=1 | 106 | 165 | 1.0E-07 |
| sp|Q9JWB7|MNME_NEIMA | tRNA modification GTPase MnmE OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=mnmE PE=3 SV=1 | 106 | 165 | 1.0E-07 |
| sp|B4RRB9|MNME_NEIG2 | tRNA modification GTPase MnmE OS=Neisseria gonorrhoeae (strain NCCP11945) GN=mnmE PE=3 SV=1 | 106 | 165 | 2.0E-07 |
| sp|Q5F529|MNME_NEIG1 | tRNA modification GTPase MnmE OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=mnmE PE=3 SV=1 | 106 | 165 | 2.0E-07 |
| sp|Q2KTI2|MNME_BORA1 | tRNA modification GTPase MnmE OS=Bordetella avium (strain 197N) GN=mnmE PE=3 SV=1 | 106 | 165 | 2.0E-07 |
| sp|C1D6H7|MNME_LARHH | tRNA modification GTPase MnmE OS=Laribacter hongkongensis (strain HLHK9) GN=mnmE PE=3 SV=1 | 87 | 165 | 6.0E-07 |
| sp|Q7NPT9|MNME_CHRVO | tRNA modification GTPase MnmE OS=Chromobacterium violaceum (strain ATCC 12472 / DSM 30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757) GN=mnmE PE=3 SV=1 | 88 | 165 | 7.0E-07 |
| sp|Q31DJ0|MNME_THICR | tRNA modification GTPase MnmE OS=Thiomicrospira crunogena (strain XCL-2) GN=mnmE PE=3 SV=2 | 85 | 167 | 1.0E-06 |
| sp|A1KCP8|MNME_AZOSB | tRNA modification GTPase MnmE OS=Azoarcus sp. (strain BH72) GN=mnmE PE=3 SV=1 | 79 | 165 | 2.0E-06 |
| sp|Q7W2J0|MNME_BORPA | tRNA modification GTPase MnmE OS=Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253) GN=mnmE PE=3 SV=1 | 106 | 165 | 4.0E-06 |
| sp|Q7VSR5|MNME_BORPE | tRNA modification GTPase MnmE OS=Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251) GN=mnmE PE=3 SV=1 | 106 | 165 | 5.0E-06 |
| sp|A9IJ97|MNME_BORPD | tRNA modification GTPase MnmE OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=mnmE PE=3 SV=1 | 106 | 167 | 5.0E-06 |
| sp|Q7WDI4|MNME_BORBR | tRNA modification GTPase MnmE OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=mnmE PE=3 SV=1 | 106 | 167 | 5.0E-06 |
| sp|Q5P4P5|MNME_AROAE | tRNA modification GTPase MnmE OS=Aromatoleum aromaticum (strain EbN1) GN=mnmE PE=3 SV=1 | 80 | 165 | 5.0E-06 |
| sp|A4GAN2|MNME_HERAR | tRNA modification GTPase MnmE OS=Herminiimonas arsenicoxydans GN=mnmE PE=3 SV=1 | 78 | 166 | 5.0E-06 |
| sp|Q82XA1|MNME_NITEU | tRNA modification GTPase MnmE OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=mnmE PE=3 SV=1 | 106 | 165 | 8.0E-06 |
| sp|Q1LTV8|MNME_BAUCH | tRNA modification GTPase MnmE OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=mnmE PE=3 SV=1 | 107 | 163 | 9.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005525 | GTP binding | Yes |
| GO:0003924 | GTPase activity | Yes |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0043168 | anion binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0003674 | molecular_function | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0000166 | nucleotide binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 64 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|026830 MSAFNSRQGRGSTNTPPGQESGYSAATYGPSVKGARIASNRTRDTTNHYQQTPEQHQWTAQGPQASNLSPVHVPA AHNPRFYPSRSFASATRARLFRKSQLNGPGNIVIFGETGTGKSSLVNMLSDDNVAMVSNLATGCTFESTPHAVFI DGVPYTLWDTAGLNEGNTGSVPADQALHYLRDLVDKLKDGVSLLVYCIRGSRYRDIIKVNYDLFTEIICQGEVPV VIVVTGLENEERMEGWWEENAKEFTDRGMLFQSHACVTTSKGKKNMFEAEYEESKHTVRNLIKDFCPGSAWTVDS DQWFGRITNRIQEYWEEYNGCQHHTSRPEREGEGEEISSLFAVIGLFLLSLVQNFSPFRSPNY* |
| Coding | >AgabiH97|026830 ATGTCAGCCTTCAATTCTCGTCAAGGCCGGGGGTCTACCAATACGCCGCCAGGTCAGGAGAGCGGTTATTCTGCC GCTACATACGGACCTTCTGTGAAAGGTGCACGGATTGCGAGCAATCGTACTCGCGATACCACGAACCATTATCAG CAAACGCCAGAGCAACATCAATGGACTGCGCAAGGTCCCCAAGCTTCGAATCTTTCTCCTGTTCATGTACCAGCT GCTCATAACCCACGCTTCTACCCCAGTAGATCTTTCGCATCTGCTACACGAGCACGTCTATTTCGCAAAAGCCAA CTCAATGGACCAGGCAATATTGTAATATTTGGGGAGACGGGCACCGGAAAGAGCAGCCTGGTCAACATGCTTTCC GACGACAATGTTGCTATGGTTAGCAACCTTGCTACTGGTTGCACGTTTGAAAGCACCCCTCATGCCGTGTTTATC GATGGAGTTCCCTACACCTTGTGGGATACTGCGGGCCTGAACGAAGGTAACACGGGTTCCGTACCGGCTGATCAA GCTCTTCACTATCTTCGCGACCTGGTTGACAAGCTGAAAGACGGTGTCAGTCTTCTTGTATACTGTATTCGCGGT TCAAGATATCGAGATATTATAAAAGTCAACTACGACCTTTTCACGGAGATCATCTGCCAGGGTGAGGTCCCCGTC GTGATTGTCGTGACTGGATTGGAAAACGAAGAGCGCATGGAGGGTTGGTGGGAGGAGAATGCGAAGGAGTTCACT GACCGCGGGATGCTCTTCCAAAGTCATGCTTGCGTCACTACATCGAAGGGGAAGAAAAACATGTTCGAGGCGGAG TATGAGGAATCGAAGCATACTGTTCGGAACTTGATCAAGGATTTTTGTCCAGGAAGCGCATGGACGGTGGACTCT GACCAGTGGTTTGGACGTATTACCAATCGTATTCAGGAGTATTGGGAAGAGTATAATGGTTGCCAGCACCACACT TCTAGGCCAGAGAGGGAGGGAGAAGGGGAAGAAATATCGAGCCTATTCGCAGTCATTGGATTATTCTTGCTTTCT CTAGTGCAAAATTTTTCTCCATTTCGTTCGCCAAACTACTAG |
| Transcript | >AgabiH97|026830 ATGTCAGCCTTCAATTCTCGTCAAGGCCGGGGGTCTACCAATACGCCGCCAGGTCAGGAGAGCGGTTATTCTGCC GCTACATACGGACCTTCTGTGAAAGGTGCACGGATTGCGAGCAATCGTACTCGCGATACCACGAACCATTATCAG CAAACGCCAGAGCAACATCAATGGACTGCGCAAGGTCCCCAAGCTTCGAATCTTTCTCCTGTTCATGTACCAGCT GCTCATAACCCACGCTTCTACCCCAGTAGATCTTTCGCATCTGCTACACGAGCACGTCTATTTCGCAAAAGCCAA CTCAATGGACCAGGCAATATTGTAATATTTGGGGAGACGGGCACCGGAAAGAGCAGCCTGGTCAACATGCTTTCC GACGACAATGTTGCTATGGTTAGCAACCTTGCTACTGGTTGCACGTTTGAAAGCACCCCTCATGCCGTGTTTATC GATGGAGTTCCCTACACCTTGTGGGATACTGCGGGCCTGAACGAAGGTAACACGGGTTCCGTACCGGCTGATCAA GCTCTTCACTATCTTCGCGACCTGGTTGACAAGCTGAAAGACGGTGTCAGTCTTCTTGTATACTGTATTCGCGGT TCAAGATATCGAGATATTATAAAAGTCAACTACGACCTTTTCACGGAGATCATCTGCCAGGGTGAGGTCCCCGTC GTGATTGTCGTGACTGGATTGGAAAACGAAGAGCGCATGGAGGGTTGGTGGGAGGAGAATGCGAAGGAGTTCACT GACCGCGGGATGCTCTTCCAAAGTCATGCTTGCGTCACTACATCGAAGGGGAAGAAAAACATGTTCGAGGCGGAG TATGAGGAATCGAAGCATACTGTTCGGAACTTGATCAAGGATTTTTGTCCAGGAAGCGCATGGACGGTGGACTCT GACCAGTGGTTTGGACGTATTACCAATCGTATTCAGGAGTATTGGGAAGAGTATAATGGTTGCCAGCACCACACT TCTAGGCCAGAGAGGGAGGGAGAAGGGGAAGAAATATCGAGCCTATTCGCAGTCATTGGATTATTCTTGCTTTCT CTAGTGCAAAATTTTTCTCCATTTCGTTCGCCAAACTACTAG |
| Gene | >AgabiH97|026830 ATGTCAGCCTTCAATTCTCGTCAAGGCCGGGGGTCTACCAATAGTAAGTGATTGGACAATTGAATCGATGTGGCA TGAATAAACGAGTATCAAGCGCCGCCAGGTCAGGAGAGCGGTTATTCTGCCGCTACATACGGACCTTCTGTGAAA GGTGCACGGATTGCGAGCAATCGTACTCGCGATACCACGAACCATTATCAGCAAACGCCAGAGCAACATCAATGG ACTGCGCAAGGTCCCCAAGCTTCGAGTATGCCGTTATATTTCATAGACTTGGGCGCCCATCTTACCTATTGTCAG ATCTTTCTCCTGTTCATGTACCAGGTAACTCCCATGTTTAAAGTACGCGGTCCTCAGGTGTCCTGAATCTGATAT GTCTCTTATCAGCTGCTCATAACCCACGCTTCTACCCCAGTAGATCTTTCGCATCTGCTACACGAGCACGTCTAT TTCGCAAAAGCCAACTCAATGGACCAGGCAATATTGTAATATTTGGGGAGACGGGCACCGGAAAGAGCAGCCTGG TCAACATGCTTTCCGACGACAATGTTGCTATGGTTAGCAACCTTGCTACTGGTTGCACGTTTGAAAGCACCCCTC ATGCCGTGTTTATCGATGGAGTTCCCTACACCTTGTGGGATACTGCGGGCCTGAACGAAGGTAACACGGGTTCCG TACCGGCTGATCAAGCTCTTCACTATCTTCGCGACCTGGTTGACAAGCTGAAAGACGGTGTCAGTCTTCTTGTAT ACTGTATTCGCGGTTCAAGATATCGAGATATTATAAAAGTCAACTACGACCTTTTCACGGAGATCATCTGCCAGG GTGAGGTCCCCGTCGTGATTGTCGTGACTGGATTGGAAAACGAAGAGCGCATGGAGGGTTGGTGGGAGGAGAATG CGAAGGAGTTCACTGACCGCGGGATGCTCTTCCAAAGTCATGCTTGCGTCACTACATCGAAGGGGAAGAAAAACA TGTTCGAGGCGGAGTATGAGGAATCGAAGCATACTGTTCGGAACTTGATCAAGGATTTTTGTCCAGGAAGCGCAT GGACGGTGGACTCTGACCAGTGGTTTGGACGTATTACCAATCGTATTCAGGAGTATTGGGAAGAGTATAATGGTT GCCAGCACCACACTTCTAGGCCAGAGAGGGAGGGAGAAGGGGAAGAAATATCGAGCCTATTCGCAGTCATTGGAT TATTCTTGCTTTCTCTAGTGCAAAATTTTTCTCCATTTCGTTCGCCAAACTACTAG |