© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|026520 |
| Gene name | |
| Location | scaffold_11:1257807..1259740 |
| Strand | + |
| Gene length (bp) | 1933 |
| Transcript length (bp) | 1449 |
| Coding sequence length (bp) | 1449 |
| Protein length (aa) | 483 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 23 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 5 | 22 | 17 |
| 2 | 269 | 291 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 207.85 | 113.76 | 301.94 |
| Initials | Initials knots | 185.35 | 107.46 | 263.25 |
| Pileal_Stipeal_center | Stage I stipe center | 357.34 | 183.48 | 531.20 |
| Pileal_Stipeal_shell | Stage I stipe shell | 231.64 | 130.02 | 333.27 |
| DIF_stipe_center | Stage II stipe center | 217.97 | 124.23 | 311.72 |
| DIF_stipe_shell | Stage II stipe shell | 366.15 | 193.12 | 539.18 |
| DIF_stipe_skin | Stage II stipe skin | 387.04 | 200.54 | 573.55 |
| DIF_cap_skin | Stage II cap skin | 327.11 | 176.36 | 477.86 |
| DIF_cap_tissue | Stage II cap tissue | 223.28 | 124.14 | 322.42 |
| DIF_gill_tissue | Stage II gill tissue | 141.39 | 82.56 | 200.22 |
| YFB_stipe_center | Young fruiting body stipe center | 290.91 | 151.60 | 430.23 |
| YFB_stipe_shell | Young fruiting body stipe shell | 311.14 | 169.01 | 453.28 |
| YFB_stipe_skin | Young fruiting body stipe skin | 311.29 | 159.49 | 463.08 |
| YFB_cap_skin | Young fruiting body cap skin | 400.73 | 207.75 | 593.70 |
| YFB_cap_tissue | Young fruiting body cap tissue | 322.29 | 157.15 | 487.42 |
| YFB_gill_tissue | Young fruiting body gill tissue | 369.03 | 196.39 | 541.67 |
| YFB_veil | Young fruiting body veil | 289.21 | 157.42 | 421.00 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.231439 | no |
| Casing | YFB_stipe_center | 0.368074 | no |
| Casing | YFB_stipe_shell | 0.221032 | no |
| Casing | YFB_stipe_skin | 0.235806 | no |
| Casing | YFB_cap_skin | 0.031088 | yes |
| Casing | YFB_cap_tissue | 0.220912 | no |
| Casing | YFB_gill_tissue | 0.063954 | no |
| Casing | YFB_veil | 0.353355 | no |
| Casing | Initials | 0.816602 | no |
| Casing | Pileal_Stipeal_center | 0.104748 | no |
| Casing | Pileal_Stipeal_shell | 0.835071 | no |
| Casing | DIF_stipe_center | 0.935884 | no |
| Casing | DIF_stipe_shell | 0.075194 | no |
| Casing | DIF_stipe_skin | 0.045273 | yes |
| Casing | DIF_cap_skin | 0.168144 | no |
| Casing | DIF_cap_tissue | 0.896965 | no |
| DIF_gill_tissue | YFB_stipe_center | 0.016104 | yes |
| DIF_gill_tissue | YFB_stipe_shell | 0.005302 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.006387 | yes |
| DIF_gill_tissue | YFB_cap_skin | 0.000613 | yes |
| DIF_gill_tissue | YFB_cap_tissue | 0.008121 | yes |
| DIF_gill_tissue | YFB_gill_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_veil | 0.007439 | yes |
| YFB_stipe_center | YFB_stipe_shell | 0.910091 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.911976 | no |
| YFB_stipe_center | YFB_cap_skin | 0.420563 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.860774 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.574839 | no |
| YFB_stipe_center | YFB_veil | 0.991834 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.999212 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.537117 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.956269 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.708441 | no |
| YFB_stipe_shell | YFB_veil | 0.896458 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.552303 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.956779 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.717483 | no |
| YFB_stipe_skin | YFB_veil | 0.896851 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.640545 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.884603 | no |
| YFB_cap_skin | YFB_veil | 0.372152 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.798463 | no |
| YFB_cap_tissue | YFB_veil | 0.847493 | no |
| YFB_gill_tissue | YFB_veil | 0.547798 | no |
| Initials | DIF_gill_tissue | 0.437800 | no |
| Initials | YFB_stipe_center | 0.167110 | no |
| Initials | YFB_stipe_shell | 0.080883 | no |
| Initials | YFB_stipe_skin | 0.094984 | no |
| Initials | YFB_cap_skin | 0.006742 | yes |
| Initials | YFB_cap_tissue | 0.090321 | no |
| Initials | YFB_gill_tissue | 0.016104 | yes |
| Initials | YFB_veil | 0.149200 | no |
| Initials | Pileal_Stipeal_center | 0.038495 | yes |
| Initials | Pileal_Stipeal_shell | 0.577040 | no |
| Initials | DIF_stipe_center | 0.708992 | no |
| Initials | DIF_stipe_shell | 0.024698 | yes |
| Initials | DIF_stipe_skin | 0.013782 | yes |
| Initials | DIF_cap_skin | 0.059513 | no |
| Initials | DIF_cap_tissue | 0.656886 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.002084 | yes |
| Pileal_Stipeal_center | YFB_stipe_center | 0.671439 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.790595 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.799163 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.839196 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.864757 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.960358 | no |
| Pileal_Stipeal_center | YFB_veil | 0.641031 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.214129 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.132709 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.970760 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.896025 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.880222 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.167110 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.092675 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.600726 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.425166 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.441504 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.082277 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.399522 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.147817 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.592238 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.915950 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.169705 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.104587 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.336860 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.950703 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.153005 | no |
| DIF_stipe_center | YFB_stipe_center | 0.458854 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.294241 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.310583 | no |
| DIF_stipe_center | YFB_cap_skin | 0.048834 | yes |
| DIF_stipe_center | YFB_cap_tissue | 0.285140 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.092841 | no |
| DIF_stipe_center | YFB_veil | 0.444000 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.108700 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.064520 | no |
| DIF_stipe_center | DIF_cap_skin | 0.229251 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.966429 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.001625 | yes |
| DIF_stipe_shell | YFB_stipe_center | 0.610881 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.736166 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.746615 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.875140 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.820475 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.989064 | no |
| DIF_stipe_shell | YFB_veil | 0.574839 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.928804 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.834647 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.127489 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.000613 | yes |
| DIF_stipe_skin | YFB_stipe_center | 0.484539 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.610165 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.626598 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.956338 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.713197 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.938913 | no |
| DIF_stipe_skin | YFB_veil | 0.447623 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.725918 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.080708 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.004548 | yes |
| DIF_cap_skin | YFB_stipe_center | 0.829461 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.934639 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.936643 | no |
| DIF_cap_skin | YFB_cap_skin | 0.655821 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.982217 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.815123 | no |
| DIF_cap_skin | YFB_veil | 0.811503 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.262471 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.128073 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.511724 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.340799 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.356963 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.059121 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.325695 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.112109 | no |
| DIF_cap_tissue | YFB_veil | 0.500352 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|026520 MSSSLVLRLLFGASIFALHAAGQNSQLRFNWKFENDATPQRVPICQDFPIVVIPDPKNTTAGNFIGTPPYYMMSF PQGGQPITQLIGNTNDTLSWTPKHPVGTNFSLQLMDSDGFTGGDGGLIYQVVENPEGQDCAAPTPPNDFTITSNV TDGGRVETCHFWRLNINGGESPYTVVLNAVNSPVITNISLSDGNNAVVYSNRADPDTTLFAGVVDKTGRWATGTQ YISTFGSIDYACIGFRTIVTTQKELDDAEKAREDSQRSKKRTAIIVGVVVSVAGVLFIAGAIAFWIHRRRRLESL KPDIEPRKFMDSGPSGQVLSVTQFMASSPNHTPSSGKTAFSPIGSLPYSIEPFSDDRRDSTADQSQPHFHLTSSS GTDQRGGPSFAQFPMSSVRRSGKAREAAQTTLAHHDRSQMLSSSARLLPDWPVRSASLQPPHHDSMSTSAMESEI IYQHQDAGQVVRELPPPYIPPHLQENSGVTFR* |
| Coding | >AgabiH97|026520 ATGTCATCGTCGCTGGTTTTACGACTTTTATTCGGCGCTTCCATATTCGCCCTCCATGCAGCGGGCCAAAATTCT CAACTGAGATTTAATTGGAAATTTGAAAATGATGCCACACCGCAGAGAGTACCAATATGTCAGGACTTTCCTATC GTTGTGATTCCCGATCCCAAAAATACGACTGCTGGCAATTTCATTGGTACTCCACCGTATTATATGATGTCGTTT CCTCAGGGAGGTCAACCTATAACACAACTTATCGGGAATACCAATGATACGCTGTCATGGACTCCAAAGCACCCC GTTGGCACTAATTTCTCACTACAATTAATGGATTCGGATGGGTTCACAGGAGGAGATGGAGGGCTGATATACCAG GTCGTCGAAAATCCTGAAGGTCAAGACTGCGCAGCACCCACACCCCCTAATGATTTCACTATCACCTCAAACGTT ACTGATGGTGGTAGAGTCGAGACTTGTCATTTTTGGAGACTGAACATTAATGGAGGAGAATCACCCTATACGGTC GTGCTGAATGCTGTGAATTCTCCTGTCATAACGAATATCTCTCTATCGGACGGCAACAACGCTGTGGTCTATAGT AATCGTGCTGACCCAGACACTACACTTTTCGCCGGCGTCGTTGACAAAACTGGGCGATGGGCTACAGGGACGCAA TACATTTCGACTTTTGGCTCAATAGACTATGCTTGCATCGGTTTTCGTACCATCGTCACCACCCAAAAGGAGCTC GATGACGCGGAAAAAGCACGCGAAGATTCTCAAAGATCCAAGAAACGCACTGCCATTATCGTCGGCGTTGTTGTC TCGGTGGCCGGGGTACTCTTTATCGCTGGTGCAATTGCATTCTGGATACATAGGCGTCGTAGGCTTGAGAGCTTA AAGCCAGACATTGAGCCACGAAAATTCATGGACTCGGGGCCTAGTGGGCAAGTCCTCTCCGTCACGCAGTTCATG GCTTCGAGCCCCAACCACACGCCCTCTTCCGGAAAGACCGCATTTTCCCCGATAGGCTCTCTCCCTTACTCTATA GAACCCTTCAGCGATGATAGAAGAGATTCTACCGCTGATCAGTCTCAACCTCACTTCCACCTGACGTCCAGCAGT GGTACAGATCAACGGGGTGGGCCAAGTTTCGCTCAATTCCCCATGTCCTCGGTTAGGCGCTCAGGGAAGGCACGA GAAGCTGCACAAACAACACTTGCCCATCATGATCGGAGCCAAATGTTGTCATCTTCAGCAAGACTTCTTCCAGAC TGGCCGGTTCGTTCGGCCTCATTGCAACCACCACACCATGATTCAATGAGCACTTCCGCTATGGAAAGCGAGATT ATATATCAGCATCAGGATGCTGGACAAGTCGTTCGTGAACTTCCACCTCCATATATTCCGCCTCACTTGCAGGAA AATTCTGGAGTTACGTTCAGGTAA |
| Transcript | >AgabiH97|026520 ATGTCATCGTCGCTGGTTTTACGACTTTTATTCGGCGCTTCCATATTCGCCCTCCATGCAGCGGGCCAAAATTCT CAACTGAGATTTAATTGGAAATTTGAAAATGATGCCACACCGCAGAGAGTACCAATATGTCAGGACTTTCCTATC GTTGTGATTCCCGATCCCAAAAATACGACTGCTGGCAATTTCATTGGTACTCCACCGTATTATATGATGTCGTTT CCTCAGGGAGGTCAACCTATAACACAACTTATCGGGAATACCAATGATACGCTGTCATGGACTCCAAAGCACCCC GTTGGCACTAATTTCTCACTACAATTAATGGATTCGGATGGGTTCACAGGAGGAGATGGAGGGCTGATATACCAG GTCGTCGAAAATCCTGAAGGTCAAGACTGCGCAGCACCCACACCCCCTAATGATTTCACTATCACCTCAAACGTT ACTGATGGTGGTAGAGTCGAGACTTGTCATTTTTGGAGACTGAACATTAATGGAGGAGAATCACCCTATACGGTC GTGCTGAATGCTGTGAATTCTCCTGTCATAACGAATATCTCTCTATCGGACGGCAACAACGCTGTGGTCTATAGT AATCGTGCTGACCCAGACACTACACTTTTCGCCGGCGTCGTTGACAAAACTGGGCGATGGGCTACAGGGACGCAA TACATTTCGACTTTTGGCTCAATAGACTATGCTTGCATCGGTTTTCGTACCATCGTCACCACCCAAAAGGAGCTC GATGACGCGGAAAAAGCACGCGAAGATTCTCAAAGATCCAAGAAACGCACTGCCATTATCGTCGGCGTTGTTGTC TCGGTGGCCGGGGTACTCTTTATCGCTGGTGCAATTGCATTCTGGATACATAGGCGTCGTAGGCTTGAGAGCTTA AAGCCAGACATTGAGCCACGAAAATTCATGGACTCGGGGCCTAGTGGGCAAGTCCTCTCCGTCACGCAGTTCATG GCTTCGAGCCCCAACCACACGCCCTCTTCCGGAAAGACCGCATTTTCCCCGATAGGCTCTCTCCCTTACTCTATA GAACCCTTCAGCGATGATAGAAGAGATTCTACCGCTGATCAGTCTCAACCTCACTTCCACCTGACGTCCAGCAGT GGTACAGATCAACGGGGTGGGCCAAGTTTCGCTCAATTCCCCATGTCCTCGGTTAGGCGCTCAGGGAAGGCACGA GAAGCTGCACAAACAACACTTGCCCATCATGATCGGAGCCAAATGTTGTCATCTTCAGCAAGACTTCTTCCAGAC TGGCCGGTTCGTTCGGCCTCATTGCAACCACCACACCATGATTCAATGAGCACTTCCGCTATGGAAAGCGAGATT ATATATCAGCATCAGGATGCTGGACAAGTCGTTCGTGAACTTCCACCTCCATATATTCCGCCTCACTTGCAGGAA AATTCTGGAGTTACGTTCAGGTAA |
| Gene | >AgabiH97|026520 ATGTCATCGTCGCTGGTTTTACGACTTTTATTCGGCGCTTCCATATTCGCCCTCCATGCAGCGGGCCAAAATTCT CAACTGAGATTTAATTGGAAATTTGAAAATGATGTAAGTATAGAGCGTGGCCTTTTCTCTCCCTCTCTCGCAGTT GAAGCTCAATTTTGTTTCCATTCAGGCCACACCGCAGAGAGTACCAATATGTCAGGACTTTCCTATCGTTGTGAT TCCCGATCCCAAAAATACGACTGCTGGCAATTTCATTGGTACTCCACCGTATTATATGATGTCGTTTCCTCAGGG AGGTCAACCTATAACACAACTTATCGGGAATACCAATGATACGCTGTCATGGACTCCAAAGCACCCCGTTGGTGA GTTTGTGTTGTCGATTTCGGACCATACGGTTAAAGGGTTTCTTAGGCACTAATTTCTCACTACAATTAATGGATT CGGATGGGTTCACAGGAGGAGATGGAGGGCTGATATACCAGGTCGTCGAAAGTGAGCATTCTTCAGAATATGTTT GCAGTTGGCCGGGCTTATAGCTATATCCCAATAGATCCTGAAGGTCAAGACTGCGCAGCACCCACACCCCCTAAT GATTTCACTATCACCTCAAACGTTACTGATGGTGGTAGAGTCGAGACTTGTCATTTTTGGAGACTGAACATTAAT GGAGGAGAATCACCCTATACGGTCGTGCTGAATGCTGTGAATTCTCCTGTCATAACGAATATCTCTCTATCGGAC GGCAACAACGCTGTGGTCTATAGTAATCGTGCTGACCCAGACACTACACTTTTCGGTAAGTATTGACTTAACTCG GTCCGAATTTTTTGTCTTATTAACTCTATTATTTTCTGCCGCAGCCGGCGTCGTTGACAAGTAAGTCCTCCACCC TCTCTGAATCCAAAAGATCCTCAATTACATTGCCTTTCTTTCGTTAGAACTGGGCGATGGGCTACAGGGACGCAA TACATTTCGACTTTTGGTGAGGAATACCGCTGTTGTCGGACACAGTTAGGTTTATTGAAATTTTTTGCAACTCCA GGCTCAATAGACTATGCTTGCATCGGTTTTCGTACCATCGTCACCACCCAAAAGGAGCTCGATGACGCGGAAAAA GCACGCGAAGATTCTCAAAGATCCAAGAAACGCACTGCCATTATCGTCGGCGTTGTTGTCTCGGTGGCCGGGGTA CTCTTTATCGCTGGTGCAATTGCATTCTGGATACATAGGCGTCGTAGGCTTGAGAGCTTAAAGCCAGACATTGAG CCACGAAAATTCATGGACTCGGGGCCTAGTGGGCAAGTCCTCTCCGTCACGCAGTTCATGGCTTCGAGCCCCAAC CACACGCCCTCTTCCGGAAAGACCGCATTTTCCCCGATAGGCTCTCTCCCTTACTCTATAGAACCCTTCAGCGAT GATAGAAGAGATTCTACCGCTGATCAGTCTCAACCTCACTTCCACCTGACGTCCAGCAGTGGTACAGATCAACGG GGTGGGCCAAGTTTCGCTCAATTCCCCATGTCCTCGGTTAGGCGCTCAGGGAAGGCACGAGAAGCTGCACAAACA ACACTTGCCCATCATGATCGGAGCCAAATGTTGTCATCTTCAGCAAGACTTCTTCCAGACTGGCCGGTTCGTTCG GCCTCATTGCAACCACCACACCATGATTCAATGAGCACTTCCGCTATGGAAAGCGAGATTATATATCAGCATCAG GATGCTGGACAAGTCGTTCGTGAACTTCCACCTCCATATATTCCGCCTCACTTGCAGGAAAATTCTGGAGGTGAA AGAAGTAGACCAGAGGGAAGTTGAGCTGGTGGTTAATTGAGTTACGTTCAGGGTGGGACACATGTTTTTTGTATT GTTTAGTTATGAATTTGACTTGACCATCTTCATTCGGACATTGCTCATATTTTAGTAA |