Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|025870
Gene name
Locationscaffold_11:1109405..1111036
Strand-
Gene length (bp)1631
Transcript length (bp)1419
Coding sequence length (bp)1419
Protein length (aa) 473

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01399 PCI PCI domain 7.5E-22 296 396
PF08375 Rpn3_C Proteasome regulatory subunit C-terminal 6.4E-21 410 465

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|P14685|PSMD3_MOUSE 26S proteasome non-ATPase regulatory subunit 3 OS=Mus musculus GN=Psmd3 PE=1 SV=3 10 467 1.0E-127
sp|Q2KJ46|PSMD3_BOVIN 26S proteasome non-ATPase regulatory subunit 3 OS=Bos taurus GN=PSMD3 PE=2 SV=1 10 467 4.0E-127
sp|O43242|PSMD3_HUMAN 26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2 10 467 6.0E-127
sp|O42897|RPN3_SCHPO Probable 26S proteasome regulatory subunit rpn3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn3 PE=3 SV=2 10 469 5.0E-125
sp|P25161|PSMD3_DROME Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Drosophila melanogaster GN=Rpn3 PE=2 SV=1 12 467 3.0E-124
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Swissprot ID Swissprot Description Start End E-value
sp|P14685|PSMD3_MOUSE 26S proteasome non-ATPase regulatory subunit 3 OS=Mus musculus GN=Psmd3 PE=1 SV=3 10 467 1.0E-127
sp|Q2KJ46|PSMD3_BOVIN 26S proteasome non-ATPase regulatory subunit 3 OS=Bos taurus GN=PSMD3 PE=2 SV=1 10 467 4.0E-127
sp|O43242|PSMD3_HUMAN 26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2 10 467 6.0E-127
sp|O42897|RPN3_SCHPO Probable 26S proteasome regulatory subunit rpn3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn3 PE=3 SV=2 10 469 5.0E-125
sp|P25161|PSMD3_DROME Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Drosophila melanogaster GN=Rpn3 PE=2 SV=1 12 467 3.0E-124
sp|O61470|PSMD3_ANOGA Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Anopheles gambiae GN=Dox-A2 PE=3 SV=2 12 464 7.0E-122
sp|Q9U5Z8|PSMD3_ANOST Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Anopheles stephensi GN=DOXA2 PE=3 SV=1 10 465 3.0E-118
sp|Q1ZXD3|PSMD3_DICDI 26S proteasome non-ATPase regulatory subunit 3 OS=Dictyostelium discoideum GN=psmD3 PE=1 SV=1 10 472 3.0E-111
sp|P93768|PSMD3_TOBAC Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Nicotiana tabacum GN=21D7 PE=2 SV=1 6 465 5.0E-100
sp|Q06364|PSMD3_DAUCA Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Daucus carota GN=21D7 PE=1 SV=2 7 466 2.0E-97
sp|Q9LNU4|PSD3A_ARATH 26S proteasome non-ATPase regulatory subunit 3 homolog A OS=Arabidopsis thaliana GN=RPN3A PE=1 SV=3 10 465 9.0E-96
sp|Q9LQR8|PSD3B_ARATH 26S proteasome non-ATPase regulatory subunit 3 homolog B OS=Arabidopsis thaliana GN=RPN3B PE=1 SV=2 4 465 4.0E-92
sp|Q04908|PSMD3_CAEEL 26S proteasome non-ATPase regulatory subunit 3 OS=Caenorhabditis elegans GN=rpn-3 PE=1 SV=1 13 465 1.0E-86
sp|P40016|RPN3_YEAST 26S proteasome regulatory subunit RPN3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPN3 PE=1 SV=5 20 472 1.0E-85
sp|Q8SRT7|RPN3_ENCCU 26S proteasome regulatory subunit RPN3 OS=Encephalitozoon cuniculi (strain GB-M1) GN=RPN3 PE=1 SV=1 179 433 5.0E-19
sp|O88543|CSN3_MOUSE COP9 signalosome complex subunit 3 OS=Mus musculus GN=Cops3 PE=1 SV=3 224 449 7.0E-11
sp|Q5RFS2|CSN3_PONAB COP9 signalosome complex subunit 3 OS=Pongo abelii GN=COPS3 PE=2 SV=1 224 449 2.0E-10
sp|Q4R898|CSN3_MACFA COP9 signalosome complex subunit 3 OS=Macaca fascicularis GN=COPS3 PE=2 SV=1 224 449 2.0E-10
sp|Q9UNS2|CSN3_HUMAN COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1 SV=3 224 449 2.0E-10
sp|Q68FW9|CSN3_RAT COP9 signalosome complex subunit 3 OS=Rattus norvegicus GN=Cops3 PE=1 SV=1 224 449 2.0E-10
sp|Q7ZTN8|CSN3_XENLA COP9 signalosome complex subunit 3 OS=Xenopus laevis GN=cops3 PE=2 SV=1 224 449 2.0E-10
sp|Q5ZJF1|CSN3_CHICK COP9 signalosome complex subunit 3 OS=Gallus gallus GN=COPS3 PE=2 SV=1 221 449 4.0E-10
sp|Q28IV6|CSN3_XENTR COP9 signalosome complex subunit 3 OS=Xenopus tropicalis GN=cops3 PE=2 SV=1 224 451 8.0E-10
sp|A6H7B5|CSN3_BOVIN COP9 signalosome complex subunit 3 OS=Bos taurus GN=COPS3 PE=2 SV=1 224 449 9.0E-10
sp|Q54PX7|PCID2_DICDI PCI domain-containing protein 2 homolog OS=Dictyostelium discoideum GN=pcid2 PE=3 SV=1 169 391 2.0E-09
sp|Q6P2U9|CSN3_DANRE COP9 signalosome complex subunit 3 OS=Danio rerio GN=cops3 PE=2 SV=1 221 449 4.0E-09
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GO

GO Term Description Terminal node
GO:0042176 regulation of protein catabolic process Yes
GO:0030234 enzyme regulator activity Yes
GO:0000502 proteasome complex Yes
GO:0019222 regulation of metabolic process No
GO:0051171 regulation of nitrogen compound metabolic process No
GO:0080090 regulation of primary metabolic process No
GO:0065007 biological regulation No
GO:1905368 peptidase complex No
GO:0005575 cellular_component No
GO:0140535 intracellular protein-containing complex No
GO:0098772 molecular function regulator activity No
GO:0008150 biological_process No
GO:0009894 regulation of catabolic process No
GO:1902494 catalytic complex No
GO:0003674 molecular_function No
GO:0032991 protein-containing complex No
GO:0050789 regulation of biological process No
GO:0060255 regulation of macromolecule metabolic process No
GO:1905369 endopeptidase complex No
GO:0051246 regulation of protein metabolic process No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 49 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|025870
MADVEAPPPLAEIKSNVALIDKGVSTLEPRFTHRVLRSLTALRKRTDAAVLRNAVEEIYPKESATRKTLLSWIPG
SSDSVASMDIDSKPSAQDPVPEIEIYFRLLLIHTLLSSSESYAKALQLAKETSEKILQLNRRSIDPLAAKVWYAV
DRAYELGGEVADARPLLLSAQRTASLRHDDESQAALINCLLRNYIHYSLFDQADKLISKTTFPSSASNPQYARYH
YYLGRIKVVQLNYTEAHRNLQQAIRRAPQPRTAPGFYQAVHKFFIVVELLMGDIPDRSLFRHPVLEKALIAYFDI
VKAVRTGSLSQFQTTLSKHSSTFTTDKTYTLILRLRQNVIKTGIRRLSLSYSRISLRDICHKLHLDSEEDAEYIV
GKAIRDGVIEGKIVHEKGWMECGGQKRGYGPEVSEVFGRRIAFCLDLHNQSVKAMRYPLNAHRKELAAAEGARER
EKELAKEIQEGELDDEDLGGDF*
Coding >AgabiH97|025870
ATGGCCGACGTCGAAGCGCCCCCTCCGCTCGCCGAAATCAAGTCCAACGTCGCCCTCATCGACAAGGGAGTCTCC
ACCCTTGAACCTCGCTTCACACATCGTGTTCTTCGGTCTCTTACTGCCTTGCGAAAGCGCACAGATGCAGCCGTT
TTGAGAAATGCCGTTGAGGAAATTTACCCCAAAGAGAGTGCCACTAGGAAAACTCTTCTTTCCTGGATCCCTGGC
TCCTCCGACTCTGTTGCATCTATGGACATTGATTCCAAGCCATCTGCCCAAGATCCTGTCCCAGAAATCGAAATC
TACTTCCGACTATTGCTCATCCACACTCTTCTCAGCTCATCTGAATCCTATGCAAAAGCGCTTCAACTAGCAAAA
GAAACCAGCGAAAAGATCCTGCAGCTCAACCGCCGAAGTATAGATCCTCTTGCAGCAAAGGTTTGGTATGCAGTC
GATCGTGCCTATGAACTCGGTGGCGAGGTTGCCGACGCTCGACCGCTTTTGCTCTCTGCACAACGTACTGCCTCT
CTTAGACACGACGATGAGTCTCAAGCGGCTCTGATCAACTGTCTCCTCCGCAATTACATACACTATAGTCTTTTT
GATCAAGCCGACAAGCTCATTTCCAAGACCACCTTCCCAAGCAGCGCCAGCAATCCTCAGTATGCGCGTTACCAC
TACTATCTCGGCCGTATCAAGGTGGTGCAATTGAATTATACTGAGGCTCATCGGAATCTACAACAAGCTATTCGA
CGTGCACCCCAACCGCGCACTGCACCTGGATTCTACCAGGCCGTGCATAAGTTCTTCATCGTTGTCGAACTCCTC
ATGGGCGATATCCCCGACCGAAGCCTATTCAGGCATCCTGTACTAGAGAAAGCTCTGATCGCTTATTTCGACATC
GTCAAAGCCGTCCGCACAGGTTCTCTCTCGCAATTCCAAACTACACTCTCCAAACATTCCAGTACTTTCACAACT
GACAAAACTTACACTCTCATCCTCCGTCTCCGTCAAAACGTCATTAAAACCGGTATCCGCCGACTCTCCCTTTCC
TATTCACGCATCTCTCTCCGAGACATCTGTCACAAACTCCATCTTGATTCCGAAGAAGATGCCGAATATATTGTA
GGGAAAGCTATTCGCGATGGTGTGATCGAAGGTAAGATCGTCCATGAAAAAGGATGGATGGAATGTGGGGGGCAG
AAGAGAGGTTACGGACCCGAGGTTAGCGAAGTATTCGGCAGAAGAATTGCTTTCTGTTTGGATCTACACAATCAG
AGCGTCAAAGCGATGCGATACCCACTTAATGCGCATAGAAAAGAGTTGGCCGCTGCGGAAGGTGCTCGGGAGAGA
GAAAAAGAATTGGCGAAGGAAATTCAAGAAGGGGAACTTGACGATGAAGATCTCGGAGGCGATTTTTAG
Transcript >AgabiH97|025870
ATGGCCGACGTCGAAGCGCCCCCTCCGCTCGCCGAAATCAAGTCCAACGTCGCCCTCATCGACAAGGGAGTCTCC
ACCCTTGAACCTCGCTTCACACATCGTGTTCTTCGGTCTCTTACTGCCTTGCGAAAGCGCACAGATGCAGCCGTT
TTGAGAAATGCCGTTGAGGAAATTTACCCCAAAGAGAGTGCCACTAGGAAAACTCTTCTTTCCTGGATCCCTGGC
TCCTCCGACTCTGTTGCATCTATGGACATTGATTCCAAGCCATCTGCCCAAGATCCTGTCCCAGAAATCGAAATC
TACTTCCGACTATTGCTCATCCACACTCTTCTCAGCTCATCTGAATCCTATGCAAAAGCGCTTCAACTAGCAAAA
GAAACCAGCGAAAAGATCCTGCAGCTCAACCGCCGAAGTATAGATCCTCTTGCAGCAAAGGTTTGGTATGCAGTC
GATCGTGCCTATGAACTCGGTGGCGAGGTTGCCGACGCTCGACCGCTTTTGCTCTCTGCACAACGTACTGCCTCT
CTTAGACACGACGATGAGTCTCAAGCGGCTCTGATCAACTGTCTCCTCCGCAATTACATACACTATAGTCTTTTT
GATCAAGCCGACAAGCTCATTTCCAAGACCACCTTCCCAAGCAGCGCCAGCAATCCTCAGTATGCGCGTTACCAC
TACTATCTCGGCCGTATCAAGGTGGTGCAATTGAATTATACTGAGGCTCATCGGAATCTACAACAAGCTATTCGA
CGTGCACCCCAACCGCGCACTGCACCTGGATTCTACCAGGCCGTGCATAAGTTCTTCATCGTTGTCGAACTCCTC
ATGGGCGATATCCCCGACCGAAGCCTATTCAGGCATCCTGTACTAGAGAAAGCTCTGATCGCTTATTTCGACATC
GTCAAAGCCGTCCGCACAGGTTCTCTCTCGCAATTCCAAACTACACTCTCCAAACATTCCAGTACTTTCACAACT
GACAAAACTTACACTCTCATCCTCCGTCTCCGTCAAAACGTCATTAAAACCGGTATCCGCCGACTCTCCCTTTCC
TATTCACGCATCTCTCTCCGAGACATCTGTCACAAACTCCATCTTGATTCCGAAGAAGATGCCGAATATATTGTA
GGGAAAGCTATTCGCGATGGTGTGATCGAAGGTAAGATCGTCCATGAAAAAGGATGGATGGAATGTGGGGGGCAG
AAGAGAGGTTACGGACCCGAGGTTAGCGAAGTATTCGGCAGAAGAATTGCTTTCTGTTTGGATCTACACAATCAG
AGCGTCAAAGCGATGCGATACCCACTTAATGCGCATAGAAAAGAGTTGGCCGCTGCGGAAGGTGCTCGGGAGAGA
GAAAAAGAATTGGCGAAGGAAATTCAAGAAGGGGAACTTGACGATGAAGATCTCGGAGGCGATTTTTAG
Gene >AgabiH97|025870
ATGGCCGACGTCGAAGCGCCCCCTCCGCTCGCCGAAATCAAGTCCAACGTCGCCCTCATCGACAAGGGAGTCTCC
ACCCTTGAACCTCGCTTCACACATCGTGTTCTTCGGTCTCTTACTGCCTTGCGAAAGCGCACAGATGCAGCCGTT
TTGAGAAATGCCGTTGAGGAAATTTACCCCAAAGGTTTGTCCCTCTACTCGATCGCCGTGCCAGTCTATTGAATG
GGACTATAGAGAGTGCCACTAGGAAAACTCTTCTTTCCTGGATCCCTGGCTCCTCCGACTCTGTTGCATCTATGG
ACATTGATTCCAAGCCATCTGCCCAAGATCCTGTCCCAGAAATCGAAATCTACTTCCGACTATTGCTCATCCACA
CTCTTCTCAGCTCATCTGAATCCTATGCAAAAGCGCTTCAACTAGCAAAAGAAACCAGCGAAAAGATCCTGCAGC
TCAACCGCCGAAGTATAGATCCTCTTGCAGCAAAGGTTTGGTATGCAGTCGATCGTGCCTATGAACTCGGTGGCG
AGGTTGCCGACGCTCGACCGTATGTCCTACCACTCCCTTCCCTAAATTTATTCTCATGTCGGATATACAGGCTTT
TGCTCTCTGCACAACGTACTGCCTCTCTTAGACACGACGATGAGTCTCAAGCGGCTCTGATCAACTGTCTCCTCC
GCAATTACATACACTATAGTCTTTTTGATCAAGCCGACAAGCTCATTTCCAAGACCACCTTCCCAAGCAGCGCCA
GCAATCCTCAGTATGCGCGTTACCACTACTATCTCGGCCGTATCAAGGTGGTGCAATTGAATTATACTGAGGCTC
ATCGGAATCTACAACAAGCTATTCGACGTGCACCCCAACCGCGCACTGCACCTGGATTCTACCAGGCCGTGCATA
AGTTCTTCATCGTTGTCGAACTCCTCATGGGCGATATCCCCGACCGAAGCCTATTCAGGCATCCTGTACTAGAGA
AAGCTCTGATCGCTTATTTCGACATCGTCAAAGGTATATTCCGTTTAATTGGTTTTGTTCAATTACTGAATGCTT
GAAATTATCCAGCCGTCCGCACAGGTTCTCTCTCGCAATTCCAAACTACACTCTCCAAACATTCCAGTACTTTCA
CAACTGACAAAACTTACACTCTCATCCTCCGTCTCCGTCAAAACGTCATTAAAACCGGTATCCGCCGACTCTCCC
TTTCCTATTCACGCATCTCTCTCCGAGACATCTGTCACAAACTCCATCTTGATTCCGAAGAAGATGCCGAATATA
TTGTAGGGAAAGCTATTCGCGATGGTGTGATCGAAGGTAAGATCGTCCATGAAAAAGGATGGATGGAATGTGGGG
GGCAGAAGAGAGGTTACGGACCCGAGGTTAGCGAAGTATTCGGCAGAAGAATTGCTTTCTGTTTGGATCTACACA
ATCAGAGCGTCAAAGTACGTGCTTGTCTTTATTTAAAACCGCCCAATTTTTCTAACGGACCATATTTGCAGGCGA
TGCGATACCCACTTAATGCGCATAGAAAAGAGTTGGCCGCTGCGGAAGGTGCTCGGGAGAGAGAAAAAGAATTGG
CGAAGGAAATTCAAGAAGGGGAACTTGACGATGAAGATCTCGGAGGCGATTTTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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