Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|025620
Gene name
Locationscaffold_11:1054454..1055039
Strand+
Gene length (bp)585
Transcript length (bp)585
Coding sequence length (bp)585
Protein length (aa) 195

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF08284 RVP_2 Retroviral aspartyl protease 2.4E-11 34 132
PF13975 gag-asp_proteas gag-polyprotein putative aspartyl protease 4.2E-09 26 117
PF13650 Asp_protease_2 Aspartyl protease 9.8E-09 25 115

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q7TN75|PEG10_MOUSE Retrotransposon-derived protein PEG10 OS=Mus musculus GN=Peg10 PE=1 SV=2 8 139 4.0E-08
sp|Q86TG7|PEG10_HUMAN Retrotransposon-derived protein PEG10 OS=Homo sapiens GN=PEG10 PE=1 SV=2 8 139 5.0E-07
sp|A6NKG5|RTL1_HUMAN Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3 31 142 6.0E-06

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.4253 0.3581 0.3337 0.0617 0.1303 0.1024 0.0655 0.0694 0.0416 0.1454

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup62
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|203700
Agaricus bisporus var bisporus H39 AgabiH39|543800
Agaricus bisporus var bisporus H39 AgabiH39|541900
Agaricus bisporus var bisporus H39 AgabiH39|484000
Agaricus bisporus var bisporus H39 AgabiH39|482700
Agaricus bisporus var bisporus H39 AgabiH39|465600
Agaricus bisporus var bisporus H39 AgabiH39|458400
Agaricus bisporus var bisporus H39 AgabiH39|442600
Agaricus bisporus var bisporus H39 AgabiH39|440000
Agaricus bisporus var bisporus H39 AgabiH39|431100
Agaricus bisporus var bisporus H39 AgabiH39|423100
Agaricus bisporus var bisporus H39 AgabiH39|407200
Agaricus bisporus var bisporus H39 AgabiH39|397400
Agaricus bisporus var bisporus H39 AgabiH39|367300
Agaricus bisporus var bisporus H39 AgabiH39|471500
Agaricus bisporus var bisporus H39 AgabiH39|365700
Agaricus bisporus var bisporus H39 AgabiH39|366200
Agaricus bisporus var bisporus H39 AgabiH39|220000
Agaricus bisporus var bisporus H39 AgabiH39|223400
Agaricus bisporus var bisporus H39 AgabiH39|231200
Agaricus bisporus var bisporus H39 AgabiH39|240600
Agaricus bisporus var bisporus H39 AgabiH39|225300
Agaricus bisporus var bisporus H39 AgabiH39|303300
Agaricus bisporus var bisporus H39 AgabiH39|310900
Agaricus bisporus var bisporus H39 AgabiH39|337900
Agaricus bisporus var bisporus H39 AgabiH39|363700
Agaricus bisporus var bisporus H39 AgabiH39|364000
Agaricus bisporus var bisporus H39 AgabiH39|288000
Agaricus bisporus var bisporus H97 AgabiH97|048890
Agaricus bisporus var bisporus H97 AgabiH97|078540
Agaricus bisporus var bisporus H97 AgabiH97|051180
Agaricus bisporus var bisporus H97 AgabiH97|059850
Agaricus bisporus var bisporus H97 AgabiH97|059860
Agaricus bisporus var bisporus H97 AgabiH97|059920
Agaricus bisporus var bisporus H97 AgabiH97|060470
Agaricus bisporus var bisporus H97 AgabiH97|076080
Agaricus bisporus var bisporus H97 AgabiH97|078600
Agaricus bisporus var bisporus H97 AgabiH97|108240
Agaricus bisporus var bisporus H97 AgabiH97|082340
Agaricus bisporus var bisporus H97 AgabiH97|084900
Agaricus bisporus var bisporus H97 AgabiH97|107880
Agaricus bisporus var bisporus H97 AgabiH97|108080
Agaricus bisporus var bisporus H97 AgabiH97|110130
Agaricus bisporus var bisporus H97 AgabiH97|117630
Agaricus bisporus var bisporus H97 AgabiH97|118430
Agaricus bisporus var bisporus H97 AgabiH97|048870
Agaricus bisporus var bisporus H97 AgabiH97|082290
Agaricus bisporus var bisporus H97 AgabiH97|048860
Agaricus bisporus var bisporus H97 AgabiH97|013380
Agaricus bisporus var bisporus H97 AgabiH97|044800
Agaricus bisporus var bisporus H97 AgabiH97|012380
Agaricus bisporus var bisporus H97 AgabiH97|012440
Agaricus bisporus var bisporus H97 AgabiH97|012730
Agaricus bisporus var bisporus H97 AgabiH97|012750
Agaricus bisporus var bisporus H97 AgabiH97|012780
Agaricus bisporus var bisporus H97 AgabiH97|013210
Agaricus bisporus var bisporus H97 AgabiH97|119550
Agaricus bisporus var bisporus H97 AgabiH97|013410
Agaricus bisporus var bisporus H97 AgabiH97|044810
Agaricus bisporus var bisporus H97 AgabiH97|016500
Agaricus bisporus var bisporus H97 AgabiH97|020610
Agaricus bisporus var bisporus H97 AgabiH97|025620 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|025630
Agaricus bisporus var bisporus H97 AgabiH97|032380
Agaricus bisporus var bisporus H97 AgabiH97|039690
Agaricus bisporus var bisporus H97 AgabiH97|039850
Agaricus bisporus var bisporus H97 AgabiH97|040720
Agaricus bisporus var bisporus H97 AgabiH97|041140
Agaricus bisporus var bisporus H97 AgabiH97|016510
Agaricus bisporus var bisporus H97 AgabiH97|119560

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|025620
MNNRYVVPQKRLGVQELEVKSLLTTTNGKKLKVSAMVDSGCTHTCIDEELVKKKKIPMKKLERPITCRNSDGTIA
GKKDITKFVKMDLNINGHNEQLDAVVTPLQSSDIFLGHDWLTNHNPEINWKQGIIKFNQCPTSCSFPHTDISFEP
RIRQLQSNEDTEEKEPDPMNPEDLPAYMKPFAHLFNKKKLRQTA*
Coding >AgabiH97|025620
ATGAACAATCGATACGTTGTCCCTCAAAAACGTCTAGGAGTGCAAGAACTGGAAGTAAAATCCCTCCTCACTACA
ACAAACGGAAAGAAACTCAAAGTCTCAGCCATGGTCGACTCGGGATGCACACACACATGTATCGACGAAGAACTA
GTAAAGAAGAAGAAGATTCCGATGAAGAAGTTGGAACGACCAATCACATGCAGAAATTCAGATGGAACGATAGCA
GGAAAGAAGGATATCACCAAATTCGTGAAAATGGATCTTAACATCAACGGTCATAACGAGCAACTGGACGCGGTC
GTCACTCCCTTACAATCATCCGACATCTTTCTAGGTCATGATTGGTTAACGAACCACAACCCCGAGATCAATTGG
AAACAAGGAATAATCAAATTCAACCAGTGCCCCACATCATGTTCTTTTCCCCATACCGACATCTCTTTCGAACCA
CGTATACGACAATTACAATCAAACGAAGACACTGAGGAAAAAGAACCGGATCCAATGAACCCTGAGGACTTACCA
GCATACATGAAACCCTTTGCCCATCTTTTCAACAAAAAGAAACTTCGACAAACTGCCTGA
Transcript >AgabiH97|025620
ATGAACAATCGATACGTTGTCCCTCAAAAACGTCTAGGAGTGCAAGAACTGGAAGTAAAATCCCTCCTCACTACA
ACAAACGGAAAGAAACTCAAAGTCTCAGCCATGGTCGACTCGGGATGCACACACACATGTATCGACGAAGAACTA
GTAAAGAAGAAGAAGATTCCGATGAAGAAGTTGGAACGACCAATCACATGCAGAAATTCAGATGGAACGATAGCA
GGAAAGAAGGATATCACCAAATTCGTGAAAATGGATCTTAACATCAACGGTCATAACGAGCAACTGGACGCGGTC
GTCACTCCCTTACAATCATCCGACATCTTTCTAGGTCATGATTGGTTAACGAACCACAACCCCGAGATCAATTGG
AAACAAGGAATAATCAAATTCAACCAGTGCCCCACATCATGTTCTTTTCCCCATACCGACATCTCTTTCGAACCA
CGTATACGACAATTACAATCAAACGAAGACACTGAGGAAAAAGAACCGGATCCAATGAACCCTGAGGACTTACCA
GCATACATGAAACCCTTTGCCCATCTTTTCAACAAAAAGAAACTTCGACAAACTGCCTGA
Gene >AgabiH97|025620
ATGAACAATCGATACGTTGTCCCTCAAAAACGTCTAGGAGTGCAAGAACTGGAAGTAAAATCCCTCCTCACTACA
ACAAACGGAAAGAAACTCAAAGTCTCAGCCATGGTCGACTCGGGATGCACACACACATGTATCGACGAAGAACTA
GTAAAGAAGAAGAAGATTCCGATGAAGAAGTTGGAACGACCAATCACATGCAGAAATTCAGATGGAACGATAGCA
GGAAAGAAGGATATCACCAAATTCGTGAAAATGGATCTTAACATCAACGGTCATAACGAGCAACTGGACGCGGTC
GTCACTCCCTTACAATCATCCGACATCTTTCTAGGTCATGATTGGTTAACGAACCACAACCCCGAGATCAATTGG
AAACAAGGAATAATCAAATTCAACCAGTGCCCCACATCATGTTCTTTTCCCCATACCGACATCTCTTTCGAACCA
CGTATACGACAATTACAATCAAACGAAGACACTGAGGAAAAAGAACCGGATCCAATGAACCCTGAGGACTTACCA
GCATACATGAAACCCTTTGCCCATCTTTTCAACAAAAAGAAACTTCGACAAACTGCCTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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