Protein ID | AgabiH97|025340 |
Gene name | |
Location | scaffold_11:980285..981881 |
Strand | + |
Gene length (bp) | 1596 |
Transcript length (bp) | 1596 |
Coding sequence length (bp) | 1596 |
Protein length (aa) | 532 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF14223 | Retrotran_gag_2 | gag-polypeptide of LTR copia-type | 2.2E-12 | 62 | 201 |
PF13976 | gag_pre-integrs | GAG-pre-integrase domain | 1.7E-10 | 431 | 498 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P10978|POLX_TOBAC | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1 | 9 | 529 | 1.0E-23 |
sp|P04146|COPIA_DROME | Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 | 217 | 527 | 6.0E-11 |
sp|P93293|M300_ARATH | Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana GN=AtMg00300 PE=4 SV=1 | 431 | 523 | 6.0E-06 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 39 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|025340 MASGSPTFAKLNEENYSTWSGEMEAWLRASGLWRLVSGRQKAPSTSSPVTQAEADALDAFEARLDKAAGWLYLMV EQEQRIHFQGIQDSPVKMWEALEAVHRQKRAGMRFNAYDDLFSIRKLEEESLQSLINRVESSKRKIKELRPSSFT LEQLDDELASMALIRALPDEFSGFTSSLLLMDKLDKTTVHQAFVTEDLQRRKRAQDASGSSQALAARSGSQFATK TCDFCGREGHKFSECKTFEKAKSRAQEDAQKPRTPYKRANKAQEESGSSSSTQTPEKAQRVTEFAGNASTPYPSS SPSPSTPLQLDADFHWLADTGATSHMTPHRHWFKSYTSHKIPIRLADNSIVYSSGVGSVVFEPVVNGKVVRAVEL TRVLHVPALRSNLLSCLYLARNKGFNITISSHSIDFKCKGTSLFTATIHSNNSAELDGSTVTSETAFSVSTLPVD LSLWHRRFIHHNYADVKSMISKDLVSGLKLESNSCPDSICEPCLAGKMHSLPFPSSLNHNRSPLELVHSDLHGPL PVASHC* |
Coding | >AgabiH97|025340 ATGGCCTCCGGATCGCCCACCTTCGCCAAACTCAACGAGGAGAACTACTCCACCTGGTCTGGAGAGATGGAGGCA TGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCTGGCAGGCAGAAGGCTCCCTCAACCTCTAGCCCTGTTACC CAGGCCGAAGCGGACGCTCTGGACGCGTTTGAGGCTCGCTTGGACAAGGCTGCAGGCTGGCTCTATCTCATGGTG GAGCAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATGTGGGAGGCTCTAGAGGCTGTA CATCGACAGAAAAGGGCTGGAATGCGATTCAATGCCTATGATGACCTCTTCTCCATCCGAAAACTCGAGGAGGAA TCCCTCCAATCACTTATCAACAGAGTAGAGAGCTCTAAACGAAAAATCAAGGAACTCCGCCCCTCCTCCTTCACT CTTGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCGGACGAGTTTTCCGGCTTCACG TCGTCTCTATTGCTTATGGACAAGCTAGATAAGACTACAGTCCACCAGGCCTTTGTCACTGAGGACTTACAACGT CGAAAACGCGCTCAGGACGCCTCTGGGAGCTCCCAGGCTCTTGCAGCTCGCTCTGGCTCCCAATTTGCGACGAAA ACCTGCGATTTCTGCGGGAGAGAGGGCCACAAGTTCTCTGAATGCAAAACCTTCGAGAAAGCGAAGTCCCGGGCT CAGGAGGACGCACAAAAGCCTAGAACACCGTATAAGAGGGCTAACAAGGCTCAGGAAGAGTCTGGGAGCTCTAGC TCAACTCAAACTCCCGAAAAAGCGCAGAGAGTCACCGAGTTTGCTGGCAATGCAAGTACTCCTTATCCCTCATCA TCTCCCTCGCCTTCTACACCTCTCCAGCTCGATGCTGACTTCCACTGGCTTGCAGATACAGGGGCCACTTCTCAT ATGACCCCTCACCGGCACTGGTTCAAGTCCTATACCAGTCACAAAATCCCCATCCGACTTGCTGACAACTCAATT GTCTATTCTTCGGGGGTGGGATCTGTAGTCTTTGAGCCAGTTGTGAATGGAAAGGTGGTCAGAGCAGTCGAGTTG ACTAGAGTTCTGCATGTCCCAGCTCTCCGGAGCAATCTCTTATCATGTCTATACCTTGCCCGTAACAAGGGCTTC AATATCACTATCTCCTCTCACTCTATTGACTTCAAATGCAAGGGCACATCGCTTTTCACGGCCACTATCCACTCC AACAACTCTGCTGAGCTCGACGGCTCAACTGTGACTTCTGAGACTGCTTTCTCTGTCTCTACCCTCCCGGTTGAC CTCTCGCTGTGGCATCGTCGCTTTATTCATCACAATTACGCTGATGTGAAGTCTATGATCAGTAAGGATCTAGTT TCCGGGCTCAAACTCGAGTCTAACTCGTGTCCTGACTCTATCTGTGAGCCGTGTCTAGCTGGCAAGATGCATTCT CTCCCTTTTCCCTCCTCTTTGAATCACAATCGCTCTCCTCTCGAGCTGGTGCATTCAGATCTTCACGGACCGCTT CCGGTCGCTTCACACTGTTAG |
Transcript | >AgabiH97|025340 ATGGCCTCCGGATCGCCCACCTTCGCCAAACTCAACGAGGAGAACTACTCCACCTGGTCTGGAGAGATGGAGGCA TGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCTGGCAGGCAGAAGGCTCCCTCAACCTCTAGCCCTGTTACC CAGGCCGAAGCGGACGCTCTGGACGCGTTTGAGGCTCGCTTGGACAAGGCTGCAGGCTGGCTCTATCTCATGGTG GAGCAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATGTGGGAGGCTCTAGAGGCTGTA CATCGACAGAAAAGGGCTGGAATGCGATTCAATGCCTATGATGACCTCTTCTCCATCCGAAAACTCGAGGAGGAA TCCCTCCAATCACTTATCAACAGAGTAGAGAGCTCTAAACGAAAAATCAAGGAACTCCGCCCCTCCTCCTTCACT CTTGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCGGACGAGTTTTCCGGCTTCACG TCGTCTCTATTGCTTATGGACAAGCTAGATAAGACTACAGTCCACCAGGCCTTTGTCACTGAGGACTTACAACGT CGAAAACGCGCTCAGGACGCCTCTGGGAGCTCCCAGGCTCTTGCAGCTCGCTCTGGCTCCCAATTTGCGACGAAA ACCTGCGATTTCTGCGGGAGAGAGGGCCACAAGTTCTCTGAATGCAAAACCTTCGAGAAAGCGAAGTCCCGGGCT CAGGAGGACGCACAAAAGCCTAGAACACCGTATAAGAGGGCTAACAAGGCTCAGGAAGAGTCTGGGAGCTCTAGC TCAACTCAAACTCCCGAAAAAGCGCAGAGAGTCACCGAGTTTGCTGGCAATGCAAGTACTCCTTATCCCTCATCA TCTCCCTCGCCTTCTACACCTCTCCAGCTCGATGCTGACTTCCACTGGCTTGCAGATACAGGGGCCACTTCTCAT ATGACCCCTCACCGGCACTGGTTCAAGTCCTATACCAGTCACAAAATCCCCATCCGACTTGCTGACAACTCAATT GTCTATTCTTCGGGGGTGGGATCTGTAGTCTTTGAGCCAGTTGTGAATGGAAAGGTGGTCAGAGCAGTCGAGTTG ACTAGAGTTCTGCATGTCCCAGCTCTCCGGAGCAATCTCTTATCATGTCTATACCTTGCCCGTAACAAGGGCTTC AATATCACTATCTCCTCTCACTCTATTGACTTCAAATGCAAGGGCACATCGCTTTTCACGGCCACTATCCACTCC AACAACTCTGCTGAGCTCGACGGCTCAACTGTGACTTCTGAGACTGCTTTCTCTGTCTCTACCCTCCCGGTTGAC CTCTCGCTGTGGCATCGTCGCTTTATTCATCACAATTACGCTGATGTGAAGTCTATGATCAGTAAGGATCTAGTT TCCGGGCTCAAACTCGAGTCTAACTCGTGTCCTGACTCTATCTGTGAGCCGTGTCTAGCTGGCAAGATGCATTCT CTCCCTTTTCCCTCCTCTTTGAATCACAATCGCTCTCCTCTCGAGCTGGTGCATTCAGATCTTCACGGACCGCTT CCGGTCGCTTCACACTGTTAG |
Gene | >AgabiH97|025340 ATGGCCTCCGGATCGCCCACCTTCGCCAAACTCAACGAGGAGAACTACTCCACCTGGTCTGGAGAGATGGAGGCA TGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCTGGCAGGCAGAAGGCTCCCTCAACCTCTAGCCCTGTTACC CAGGCCGAAGCGGACGCTCTGGACGCGTTTGAGGCTCGCTTGGACAAGGCTGCAGGCTGGCTCTATCTCATGGTG GAGCAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATGTGGGAGGCTCTAGAGGCTGTA CATCGACAGAAAAGGGCTGGAATGCGATTCAATGCCTATGATGACCTCTTCTCCATCCGAAAACTCGAGGAGGAA TCCCTCCAATCACTTATCAACAGAGTAGAGAGCTCTAAACGAAAAATCAAGGAACTCCGCCCCTCCTCCTTCACT CTTGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCGGACGAGTTTTCCGGCTTCACG TCGTCTCTATTGCTTATGGACAAGCTAGATAAGACTACAGTCCACCAGGCCTTTGTCACTGAGGACTTACAACGT CGAAAACGCGCTCAGGACGCCTCTGGGAGCTCCCAGGCTCTTGCAGCTCGCTCTGGCTCCCAATTTGCGACGAAA ACCTGCGATTTCTGCGGGAGAGAGGGCCACAAGTTCTCTGAATGCAAAACCTTCGAGAAAGCGAAGTCCCGGGCT CAGGAGGACGCACAAAAGCCTAGAACACCGTATAAGAGGGCTAACAAGGCTCAGGAAGAGTCTGGGAGCTCTAGC TCAACTCAAACTCCCGAAAAAGCGCAGAGAGTCACCGAGTTTGCTGGCAATGCAAGTACTCCTTATCCCTCATCA TCTCCCTCGCCTTCTACACCTCTCCAGCTCGATGCTGACTTCCACTGGCTTGCAGATACAGGGGCCACTTCTCAT ATGACCCCTCACCGGCACTGGTTCAAGTCCTATACCAGTCACAAAATCCCCATCCGACTTGCTGACAACTCAATT GTCTATTCTTCGGGGGTGGGATCTGTAGTCTTTGAGCCAGTTGTGAATGGAAAGGTGGTCAGAGCAGTCGAGTTG ACTAGAGTTCTGCATGTCCCAGCTCTCCGGAGCAATCTCTTATCATGTCTATACCTTGCCCGTAACAAGGGCTTC AATATCACTATCTCCTCTCACTCTATTGACTTCAAATGCAAGGGCACATCGCTTTTCACGGCCACTATCCACTCC AACAACTCTGCTGAGCTCGACGGCTCAACTGTGACTTCTGAGACTGCTTTCTCTGTCTCTACCCTCCCGGTTGAC CTCTCGCTGTGGCATCGTCGCTTTATTCATCACAATTACGCTGATGTGAAGTCTATGATCAGTAAGGATCTAGTT TCCGGGCTCAAACTCGAGTCTAACTCGTGTCCTGACTCTATCTGTGAGCCGTGTCTAGCTGGCAAGATGCATTCT CTCCCTTTTCCCTCCTCTTTGAATCACAATCGCTCTCCTCTCGAGCTGGTGCATTCAGATCTTCACGGACCGCTT CCGGTCGCTTCACACTGTTAG |