Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|025340
Gene name
Locationscaffold_11:980285..981881
Strand+
Gene length (bp)1596
Transcript length (bp)1596
Coding sequence length (bp)1596
Protein length (aa) 532

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF14223 Retrotran_gag_2 gag-polypeptide of LTR copia-type 2.2E-12 62 201
PF13976 gag_pre-integrs GAG-pre-integrase domain 1.7E-10 431 498

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1 9 529 1.0E-23
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3 217 527 6.0E-11
sp|P93293|M300_ARATH Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana GN=AtMg00300 PE=4 SV=1 431 523 6.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 39 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|025340
MASGSPTFAKLNEENYSTWSGEMEAWLRASGLWRLVSGRQKAPSTSSPVTQAEADALDAFEARLDKAAGWLYLMV
EQEQRIHFQGIQDSPVKMWEALEAVHRQKRAGMRFNAYDDLFSIRKLEEESLQSLINRVESSKRKIKELRPSSFT
LEQLDDELASMALIRALPDEFSGFTSSLLLMDKLDKTTVHQAFVTEDLQRRKRAQDASGSSQALAARSGSQFATK
TCDFCGREGHKFSECKTFEKAKSRAQEDAQKPRTPYKRANKAQEESGSSSSTQTPEKAQRVTEFAGNASTPYPSS
SPSPSTPLQLDADFHWLADTGATSHMTPHRHWFKSYTSHKIPIRLADNSIVYSSGVGSVVFEPVVNGKVVRAVEL
TRVLHVPALRSNLLSCLYLARNKGFNITISSHSIDFKCKGTSLFTATIHSNNSAELDGSTVTSETAFSVSTLPVD
LSLWHRRFIHHNYADVKSMISKDLVSGLKLESNSCPDSICEPCLAGKMHSLPFPSSLNHNRSPLELVHSDLHGPL
PVASHC*
Coding >AgabiH97|025340
ATGGCCTCCGGATCGCCCACCTTCGCCAAACTCAACGAGGAGAACTACTCCACCTGGTCTGGAGAGATGGAGGCA
TGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCTGGCAGGCAGAAGGCTCCCTCAACCTCTAGCCCTGTTACC
CAGGCCGAAGCGGACGCTCTGGACGCGTTTGAGGCTCGCTTGGACAAGGCTGCAGGCTGGCTCTATCTCATGGTG
GAGCAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATGTGGGAGGCTCTAGAGGCTGTA
CATCGACAGAAAAGGGCTGGAATGCGATTCAATGCCTATGATGACCTCTTCTCCATCCGAAAACTCGAGGAGGAA
TCCCTCCAATCACTTATCAACAGAGTAGAGAGCTCTAAACGAAAAATCAAGGAACTCCGCCCCTCCTCCTTCACT
CTTGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCGGACGAGTTTTCCGGCTTCACG
TCGTCTCTATTGCTTATGGACAAGCTAGATAAGACTACAGTCCACCAGGCCTTTGTCACTGAGGACTTACAACGT
CGAAAACGCGCTCAGGACGCCTCTGGGAGCTCCCAGGCTCTTGCAGCTCGCTCTGGCTCCCAATTTGCGACGAAA
ACCTGCGATTTCTGCGGGAGAGAGGGCCACAAGTTCTCTGAATGCAAAACCTTCGAGAAAGCGAAGTCCCGGGCT
CAGGAGGACGCACAAAAGCCTAGAACACCGTATAAGAGGGCTAACAAGGCTCAGGAAGAGTCTGGGAGCTCTAGC
TCAACTCAAACTCCCGAAAAAGCGCAGAGAGTCACCGAGTTTGCTGGCAATGCAAGTACTCCTTATCCCTCATCA
TCTCCCTCGCCTTCTACACCTCTCCAGCTCGATGCTGACTTCCACTGGCTTGCAGATACAGGGGCCACTTCTCAT
ATGACCCCTCACCGGCACTGGTTCAAGTCCTATACCAGTCACAAAATCCCCATCCGACTTGCTGACAACTCAATT
GTCTATTCTTCGGGGGTGGGATCTGTAGTCTTTGAGCCAGTTGTGAATGGAAAGGTGGTCAGAGCAGTCGAGTTG
ACTAGAGTTCTGCATGTCCCAGCTCTCCGGAGCAATCTCTTATCATGTCTATACCTTGCCCGTAACAAGGGCTTC
AATATCACTATCTCCTCTCACTCTATTGACTTCAAATGCAAGGGCACATCGCTTTTCACGGCCACTATCCACTCC
AACAACTCTGCTGAGCTCGACGGCTCAACTGTGACTTCTGAGACTGCTTTCTCTGTCTCTACCCTCCCGGTTGAC
CTCTCGCTGTGGCATCGTCGCTTTATTCATCACAATTACGCTGATGTGAAGTCTATGATCAGTAAGGATCTAGTT
TCCGGGCTCAAACTCGAGTCTAACTCGTGTCCTGACTCTATCTGTGAGCCGTGTCTAGCTGGCAAGATGCATTCT
CTCCCTTTTCCCTCCTCTTTGAATCACAATCGCTCTCCTCTCGAGCTGGTGCATTCAGATCTTCACGGACCGCTT
CCGGTCGCTTCACACTGTTAG
Transcript >AgabiH97|025340
ATGGCCTCCGGATCGCCCACCTTCGCCAAACTCAACGAGGAGAACTACTCCACCTGGTCTGGAGAGATGGAGGCA
TGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCTGGCAGGCAGAAGGCTCCCTCAACCTCTAGCCCTGTTACC
CAGGCCGAAGCGGACGCTCTGGACGCGTTTGAGGCTCGCTTGGACAAGGCTGCAGGCTGGCTCTATCTCATGGTG
GAGCAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATGTGGGAGGCTCTAGAGGCTGTA
CATCGACAGAAAAGGGCTGGAATGCGATTCAATGCCTATGATGACCTCTTCTCCATCCGAAAACTCGAGGAGGAA
TCCCTCCAATCACTTATCAACAGAGTAGAGAGCTCTAAACGAAAAATCAAGGAACTCCGCCCCTCCTCCTTCACT
CTTGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCGGACGAGTTTTCCGGCTTCACG
TCGTCTCTATTGCTTATGGACAAGCTAGATAAGACTACAGTCCACCAGGCCTTTGTCACTGAGGACTTACAACGT
CGAAAACGCGCTCAGGACGCCTCTGGGAGCTCCCAGGCTCTTGCAGCTCGCTCTGGCTCCCAATTTGCGACGAAA
ACCTGCGATTTCTGCGGGAGAGAGGGCCACAAGTTCTCTGAATGCAAAACCTTCGAGAAAGCGAAGTCCCGGGCT
CAGGAGGACGCACAAAAGCCTAGAACACCGTATAAGAGGGCTAACAAGGCTCAGGAAGAGTCTGGGAGCTCTAGC
TCAACTCAAACTCCCGAAAAAGCGCAGAGAGTCACCGAGTTTGCTGGCAATGCAAGTACTCCTTATCCCTCATCA
TCTCCCTCGCCTTCTACACCTCTCCAGCTCGATGCTGACTTCCACTGGCTTGCAGATACAGGGGCCACTTCTCAT
ATGACCCCTCACCGGCACTGGTTCAAGTCCTATACCAGTCACAAAATCCCCATCCGACTTGCTGACAACTCAATT
GTCTATTCTTCGGGGGTGGGATCTGTAGTCTTTGAGCCAGTTGTGAATGGAAAGGTGGTCAGAGCAGTCGAGTTG
ACTAGAGTTCTGCATGTCCCAGCTCTCCGGAGCAATCTCTTATCATGTCTATACCTTGCCCGTAACAAGGGCTTC
AATATCACTATCTCCTCTCACTCTATTGACTTCAAATGCAAGGGCACATCGCTTTTCACGGCCACTATCCACTCC
AACAACTCTGCTGAGCTCGACGGCTCAACTGTGACTTCTGAGACTGCTTTCTCTGTCTCTACCCTCCCGGTTGAC
CTCTCGCTGTGGCATCGTCGCTTTATTCATCACAATTACGCTGATGTGAAGTCTATGATCAGTAAGGATCTAGTT
TCCGGGCTCAAACTCGAGTCTAACTCGTGTCCTGACTCTATCTGTGAGCCGTGTCTAGCTGGCAAGATGCATTCT
CTCCCTTTTCCCTCCTCTTTGAATCACAATCGCTCTCCTCTCGAGCTGGTGCATTCAGATCTTCACGGACCGCTT
CCGGTCGCTTCACACTGTTAG
Gene >AgabiH97|025340
ATGGCCTCCGGATCGCCCACCTTCGCCAAACTCAACGAGGAGAACTACTCCACCTGGTCTGGAGAGATGGAGGCA
TGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCTGGCAGGCAGAAGGCTCCCTCAACCTCTAGCCCTGTTACC
CAGGCCGAAGCGGACGCTCTGGACGCGTTTGAGGCTCGCTTGGACAAGGCTGCAGGCTGGCTCTATCTCATGGTG
GAGCAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATGTGGGAGGCTCTAGAGGCTGTA
CATCGACAGAAAAGGGCTGGAATGCGATTCAATGCCTATGATGACCTCTTCTCCATCCGAAAACTCGAGGAGGAA
TCCCTCCAATCACTTATCAACAGAGTAGAGAGCTCTAAACGAAAAATCAAGGAACTCCGCCCCTCCTCCTTCACT
CTTGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCGGACGAGTTTTCCGGCTTCACG
TCGTCTCTATTGCTTATGGACAAGCTAGATAAGACTACAGTCCACCAGGCCTTTGTCACTGAGGACTTACAACGT
CGAAAACGCGCTCAGGACGCCTCTGGGAGCTCCCAGGCTCTTGCAGCTCGCTCTGGCTCCCAATTTGCGACGAAA
ACCTGCGATTTCTGCGGGAGAGAGGGCCACAAGTTCTCTGAATGCAAAACCTTCGAGAAAGCGAAGTCCCGGGCT
CAGGAGGACGCACAAAAGCCTAGAACACCGTATAAGAGGGCTAACAAGGCTCAGGAAGAGTCTGGGAGCTCTAGC
TCAACTCAAACTCCCGAAAAAGCGCAGAGAGTCACCGAGTTTGCTGGCAATGCAAGTACTCCTTATCCCTCATCA
TCTCCCTCGCCTTCTACACCTCTCCAGCTCGATGCTGACTTCCACTGGCTTGCAGATACAGGGGCCACTTCTCAT
ATGACCCCTCACCGGCACTGGTTCAAGTCCTATACCAGTCACAAAATCCCCATCCGACTTGCTGACAACTCAATT
GTCTATTCTTCGGGGGTGGGATCTGTAGTCTTTGAGCCAGTTGTGAATGGAAAGGTGGTCAGAGCAGTCGAGTTG
ACTAGAGTTCTGCATGTCCCAGCTCTCCGGAGCAATCTCTTATCATGTCTATACCTTGCCCGTAACAAGGGCTTC
AATATCACTATCTCCTCTCACTCTATTGACTTCAAATGCAAGGGCACATCGCTTTTCACGGCCACTATCCACTCC
AACAACTCTGCTGAGCTCGACGGCTCAACTGTGACTTCTGAGACTGCTTTCTCTGTCTCTACCCTCCCGGTTGAC
CTCTCGCTGTGGCATCGTCGCTTTATTCATCACAATTACGCTGATGTGAAGTCTATGATCAGTAAGGATCTAGTT
TCCGGGCTCAAACTCGAGTCTAACTCGTGTCCTGACTCTATCTGTGAGCCGTGTCTAGCTGGCAAGATGCATTCT
CTCCCTTTTCCCTCCTCTTTGAATCACAATCGCTCTCCTCTCGAGCTGGTGCATTCAGATCTTCACGGACCGCTT
CCGGTCGCTTCACACTGTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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