© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|025010 |
| Gene name | |
| Location | scaffold_11:870028..871215 |
| Strand | + |
| Gene length (bp) | 1187 |
| Transcript length (bp) | 909 |
| Coding sequence length (bp) | 909 |
| Protein length (aa) | 303 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01370 | Epimerase | NAD dependent epimerase/dehydratase family | 6.9E-17 | 7 | 208 |
| PF16363 | GDP_Man_Dehyd | GDP-mannose 4,6 dehydratase | 1.5E-11 | 42 | 168 |
| PF01073 | 3Beta_HSD | 3-beta hydroxysteroid dehydrogenase/isomerase family | 2.9E-08 | 9 | 216 |
| PF07993 | NAD_binding_4 | Male sterility protein | 1.5E-04 | 96 | 201 |
| PF04321 | RmlD_sub_bind | RmlD substrate binding domain | 2.0E-06 | 7 | 170 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P44094|Y1014_HAEIN | Uncharacterized protein HI_1014 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1014 PE=3 SV=1 | 7 | 296 | 3.0E-58 |
| sp|P43939|Y094_HAEIN | Uncharacterized protein HI_0094 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0094 PE=4 SV=1 | 158 | 216 | 4.0E-21 |
| sp|Q49VA1|Y2164_STAS1 | Uncharacterized epimerase/dehydratase SSP2164 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP2164 PE=3 SV=1 | 7 | 196 | 7.0E-09 |
| sp|Q2YSA8|Y504_STAAB | Uncharacterized epimerase/dehydratase SAB0504 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB0504 PE=3 SV=1 | 7 | 200 | 2.0E-08 |
| sp|Q7A1Q7|Y508_STAAW | Uncharacterized epimerase/dehydratase MW0508 OS=Staphylococcus aureus (strain MW2) GN=MW0508 PE=3 SV=1 | 7 | 200 | 8.0E-08 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|P44094|Y1014_HAEIN | Uncharacterized protein HI_1014 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_1014 PE=3 SV=1 | 7 | 296 | 3.0E-58 |
| sp|P43939|Y094_HAEIN | Uncharacterized protein HI_0094 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0094 PE=4 SV=1 | 158 | 216 | 4.0E-21 |
| sp|Q49VA1|Y2164_STAS1 | Uncharacterized epimerase/dehydratase SSP2164 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP2164 PE=3 SV=1 | 7 | 196 | 7.0E-09 |
| sp|Q2YSA8|Y504_STAAB | Uncharacterized epimerase/dehydratase SAB0504 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB0504 PE=3 SV=1 | 7 | 200 | 2.0E-08 |
| sp|Q7A1Q7|Y508_STAAW | Uncharacterized epimerase/dehydratase MW0508 OS=Staphylococcus aureus (strain MW2) GN=MW0508 PE=3 SV=1 | 7 | 200 | 8.0E-08 |
| sp|Q7A788|Y511_STAAN | Uncharacterized epimerase/dehydratase SA0511 OS=Staphylococcus aureus (strain N315) GN=SA0511 PE=1 SV=1 | 7 | 200 | 8.0E-08 |
| sp|Q6GBT4|Y511_STAAS | Uncharacterized epimerase/dehydratase SAS0511 OS=Staphylococcus aureus (strain MSSA476) GN=SAS0511 PE=3 SV=1 | 7 | 200 | 8.0E-08 |
| sp|Q2G0M5|Y535_STAA8 | Uncharacterized epimerase/dehydratase SAOUHSC_00535 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00535 PE=3 SV=1 | 7 | 200 | 8.0E-08 |
| sp|Q2FJ87|Y538_STAA3 | Uncharacterized epimerase/dehydratase SAUSA300_0538 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0538 PE=3 SV=1 | 7 | 200 | 8.0E-08 |
| sp|Q99W56|Y553_STAAM | Uncharacterized epimerase/dehydratase SAV0553 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV0553 PE=3 SV=1 | 7 | 200 | 8.0E-08 |
| sp|Q5HIC2|Y599_STAAC | Uncharacterized epimerase/dehydratase SACOL0599 OS=Staphylococcus aureus (strain COL) GN=SACOL0599 PE=3 SV=1 | 7 | 200 | 8.0E-08 |
| sp|Q4L3L8|Y2450_STAHJ | Uncharacterized epimerase/dehydratase SH2450 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH2450 PE=3 SV=1 | 5 | 206 | 2.0E-07 |
| sp|Q6GJB5|Y558_STAAR | Uncharacterized epimerase/dehydratase SAR0558 OS=Staphylococcus aureus (strain MRSA252) GN=SAR0558 PE=3 SV=1 | 7 | 200 | 3.0E-07 |
| sp|Q2KIR8|TDH_BOVIN | L-threonine 3-dehydrogenase, mitochondrial OS=Bos taurus GN=TDH PE=2 SV=1 | 82 | 212 | 7.0E-07 |
| sp|O64749|ARAE2_ARATH | Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsis thaliana GN=At2g34850 PE=2 SV=3 | 7 | 183 | 7.0E-07 |
| sp|P55579|Y4NG_RHISN | Uncharacterized protein y4nG OS=Rhizobium sp. (strain NGR234) GN=NGR_a02350 PE=3 SV=1 | 3 | 183 | 1.0E-06 |
| sp|Q8MIR0|TDH_PIG | L-threonine 3-dehydrogenase, mitochondrial OS=Sus scrofa GN=TDH PE=1 SV=1 | 77 | 298 | 1.0E-06 |
| sp|Q57664|GALE_METJA | Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0211 PE=3 SV=1 | 6 | 202 | 3.0E-06 |
| sp|Q9SA77|ARAE1_ARATH | UDP-arabinose 4-epimerase 1 OS=Arabidopsis thaliana GN=MUR4 PE=1 SV=1 | 7 | 183 | 3.0E-06 |
| sp|Q8CQ79|Y317_STAES | Uncharacterized epimerase/dehydratase SE_0317 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_0317 PE=3 SV=1 | 7 | 196 | 8.0E-06 |
| sp|Q5HRJ9|Y194_STAEQ | Uncharacterized epimerase/dehydratase SERP0194 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0194 PE=3 SV=1 | 7 | 196 | 8.0E-06 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | Yes |
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity | Yes |
| GO:0006694 | steroid biosynthetic process | Yes |
| GO:1901576 | organic substance biosynthetic process | No |
| GO:0033764 | steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor | No |
| GO:0009058 | biosynthetic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0016229 | steroid dehydrogenase activity | No |
| GO:0008202 | steroid metabolic process | No |
| GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:1901362 | organic cyclic compound biosynthetic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008610 | lipid biosynthetic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0006629 | lipid metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 18 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|025010 MTIGEVVLLTGASGWLASRVADALLKDPLTPNAHLIVTDIAKPRLEADNVIAVQADLTDNDQIDSLFTTAYGVPD TVYCMHGIMSRGSEDNFDLGLKVNVDSVRSLLETTRKHGNLKGKSIKFIFTSGLAVYGGPLPPIVEPDTSPTPQS AYGTSKLISELLINEYTRRGFIDGRILRLPTVIVRPGQPAAATSAFLSAIIREPLKGEVAICPIGNSFDSPQTEL KTWVASSKSILQNLIIAKHIPASKFTPHTRVVCLPGFTTTVREMLEALRQVSGPEALRRVVFRDDETDRRIFGIC EG* |
| Coding | >AgabiH97|025010 ATGACTATCGGAGAAGTTGTGTTATTGACCGGTGCTAGTGGTTGGCTGGCGAGCCGCGTTGCGGATGCCCTACTC AAAGATCCATTGACGCCAAACGCCCACTTGATAGTGACAGATATAGCCAAACCTCGCTTGGAGGCGGACAATGTG ATTGCGGTTCAGGCTGATTTGACTGATAACGACCAGATAGATTCTCTTTTTACGACGGCGTATGGGGTTCCGGAT ACGGTGTATTGTATGCATGGTATCATGTCGAGAGGATCTGAAGATAACTTTGATCTGGGATTGAAAGTAAACGTC GACTCTGTTCGCAGTCTCCTCGAAACTACTAGAAAGCATGGCAATCTCAAAGGCAAGAGCATCAAGTTCATATTT ACATCTGGTCTGGCTGTTTATGGAGGGCCTTTGCCACCTATTGTTGAACCCGACACATCACCGACTCCGCAGAGC GCGTACGGTACAAGCAAACTCATCAGCGAACTTCTCATAAATGAATATACTCGCCGAGGTTTTATTGACGGTCGT ATTCTTCGACTTCCAACGGTGATCGTTCGACCGGGTCAACCTGCAGCAGCCACTTCAGCTTTCTTATCAGCGATA ATCCGAGAGCCACTCAAGGGAGAAGTAGCCATTTGTCCTATTGGCAATTCCTTTGATTCTCCTCAAACGGAGCTC AAAACCTGGGTCGCGTCATCCAAAAGTATTCTTCAAAACTTGATCATTGCGAAACATATCCCTGCGTCAAAGTTT ACACCTCATACTCGTGTGGTTTGCTTACCAGGGTTCACGACGACGGTTCGTGAAATGCTGGAAGCGTTGCGGCAA GTGAGTGGTCCGGAGGCGCTGCGAAGAGTTGTTTTTAGAGATGATGAGACGGATCGAAGGATTTTTGGGATTTGT GAAGGATGA |
| Transcript | >AgabiH97|025010 ATGACTATCGGAGAAGTTGTGTTATTGACCGGTGCTAGTGGTTGGCTGGCGAGCCGCGTTGCGGATGCCCTACTC AAAGATCCATTGACGCCAAACGCCCACTTGATAGTGACAGATATAGCCAAACCTCGCTTGGAGGCGGACAATGTG ATTGCGGTTCAGGCTGATTTGACTGATAACGACCAGATAGATTCTCTTTTTACGACGGCGTATGGGGTTCCGGAT ACGGTGTATTGTATGCATGGTATCATGTCGAGAGGATCTGAAGATAACTTTGATCTGGGATTGAAAGTAAACGTC GACTCTGTTCGCAGTCTCCTCGAAACTACTAGAAAGCATGGCAATCTCAAAGGCAAGAGCATCAAGTTCATATTT ACATCTGGTCTGGCTGTTTATGGAGGGCCTTTGCCACCTATTGTTGAACCCGACACATCACCGACTCCGCAGAGC GCGTACGGTACAAGCAAACTCATCAGCGAACTTCTCATAAATGAATATACTCGCCGAGGTTTTATTGACGGTCGT ATTCTTCGACTTCCAACGGTGATCGTTCGACCGGGTCAACCTGCAGCAGCCACTTCAGCTTTCTTATCAGCGATA ATCCGAGAGCCACTCAAGGGAGAAGTAGCCATTTGTCCTATTGGCAATTCCTTTGATTCTCCTCAAACGGAGCTC AAAACCTGGGTCGCGTCATCCAAAAGTATTCTTCAAAACTTGATCATTGCGAAACATATCCCTGCGTCAAAGTTT ACACCTCATACTCGTGTGGTTTGCTTACCAGGGTTCACGACGACGGTTCGTGAAATGCTGGAAGCGTTGCGGCAA GTGAGTGGTCCGGAGGCGCTGCGAAGAGTTGTTTTTAGAGATGATGAGACGGATCGAAGGATTTTTGGGATTTGT GAAGGATGA |
| Gene | >AgabiH97|025010 ATGACTATCGGAGAAGTTGTGTTATTGACCGGTGCTAGTGGTTGGCTGGCGAGCCGCGTGAGCGTTATCACCCCC TTCTTGAACATTCTTGAGTTCATCTCTGATGAATTTCTATTGTTATAGGTTGCGGATGCCCTACTCAAAGATCCA TTGACGCCAAACGCCCACTTGATAGTGACAGATATAGCCAAACCTCGCTTGGAGGCGGACAATGTGATTGCGGTT CAGGCTGATTTGACTGATAACGACCAGATAGATTCTCTTTTTACGACGGCGTATGGGGTTCCGGATACGGTGTAT TGTATGCATGGTATCATGTCGAGAGGATCTGAAGATAACTTTGATCTGGGATTGAAAGTGAGGATGGACTCTATT GCTATTGGTATCTGTGCATCGCTGATCGATGCTTACTAGGTAAACGTCGACTCTGTTCGCAGTCTCCTCGAAACT ACTAGAAAGCATGGCAATCTCAAAGGCAAGAGCATCAAGTTCATATTTACATCTGGTCTGGCTGTTTATGGAGGG CCTTTGGTATATACTTCCTCTACCTCATGATTTTGCGACTCGGCAGCGCCGACTTATGCCGCGACTTTAGCCACC TATTGTTGAACCCGACACATCACCGACTCCGCAGAGCGCGTACGGTACAAGCAAACTCATCAGCGAACTTCTCAT AAATGAATATACTCGCCGAGGTTTTATTGACGGTCGTATTCTTCGACTTCCAACGGTGATCGTTCGACCGGGTCA ACCTGCAGCAGCCACTTCAGCTTTCTTATCAGGTAAAGTTGGTCAGCACAGGCCTCGAGTCTTAACCAACTCTTT GCAGCGATAATCCGAGAGCCACTCAAGGGAGAAGTAGCCATTTGTCCTATTGGCAATTCCTTTGATTCTCCTCAA ACGGAGCTCAAAACCTGGGTCGCGTCATCCAAAAGTATTCTTCAAAACTTGATCATTGCGAAACATATCCCTGCG TCAAAGTTTACACCTCATACTCGTGTGGTTTGCTTACCAGGGTTCACGACGACGGTTCGTGAAATGCTGGAAGCG TTGCGGCAAGTGAGTGGTCCGGAGGCGCTGCGAAGAGTTGTTTTTAGAGATGATGAGACGGATCGAAGGATTGTG CGTTCGTGGCCTGAGAAGGCTGATAATTCGTATGCGCTTAGTTTGGGATTTGTGAAGGATGA |