Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|024700
Gene name
Locationscaffold_11:798775..799866
Strand-
Gene length (bp)1091
Transcript length (bp)882
Coding sequence length (bp)882
Protein length (aa) 294

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF05721 PhyH Phytanoyl-CoA dioxygenase (PhyH) 2.6E-11 11 223

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm Peroxisomal targeting signal 0.7185 0.4823 0.0421 0.0363 0.2213 0.2437 0.0752 0.0635 0.0283 0.1462

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup5616
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|024700
Agaricus bisporus var bisporus H97 AgabiH97|024700 (this protein)
Rhodonia placenta FPRL280 RhoplFPRL280|259_8

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|024700
MAIDKSIKQTYDELGYVVVPGLIPQEHWNDLDAACERVVQKTRTGTWSHRRTVGKQFPPFDNDNPDSWGVQHVMH
PQLNEPAFGKWYTSEGLLDIVKELLGCSDEQLQLELFNMLINPLSHDFALRWHRDDVNEKASEEEERNALNTWHY
GVQWNAALRPDSCLYVVPRSHSQVRTPEQRKLSETSDAPENPLDMPGAIRVTLQPGETIFYNSNILHCATYSSTS
PRVTLHGCIGDIRGGSTRARNVLQHGLEWMKGDEFRASLPQGLRARKMLDNLLDMQKNSGPVGYSLQN*
Coding >AgabiH97|024700
ATGGCCATCGACAAGTCTATCAAACAAACGTACGACGAGCTGGGCTATGTCGTTGTCCCAGGACTCATTCCCCAG
GAACACTGGAATGATCTAGATGCTGCTTGCGAGAGGGTCGTTCAGAAGACCCGTACGGGCACCTGGTCCCATCGC
AGAACCGTTGGAAAGCAATTCCCGCCATTCGATAATGACAACCCTGATTCCTGGGGTGTGCAGCATGTCATGCAC
CCGCAACTAAATGAACCCGCTTTTGGCAAATGGTACACTTCGGAGGGTTTGCTTGACATCGTCAAAGAACTATTG
GGCTGCAGTGATGAGCAACTGCAGTTAGAACTCTTCAATATGCTCATCAATCCCTTAAGCCACGATTTTGCTCTC
CGCTGGCATCGCGACGATGTTAATGAGAAGGCGTCCGAGGAAGAGGAGCGCAATGCTCTGAACACTTGGCATTAT
GGAGTGCAGTGGAATGCCGCTCTTCGTCCTGATAGCTGCTTATACGTTGTTCCGCGCTCGCACAGCCAAGTGAGG
ACACCGGAACAACGTAAGCTTTCGGAAACTTCAGACGCTCCAGAGAATCCTCTGGACATGCCGGGAGCTATCCGA
GTCACTTTACAACCCGGTGAAACCATATTCTACAATTCAAACATCCTGCACTGCGCCACATACAGTTCTACTTCT
CCTCGAGTCACATTACACGGCTGTATCGGTGACATTAGGGGTGGATCTACAAGGGCGCGTAATGTACTTCAGCAC
GGACTGGAGTGGATGAAGGGCGACGAGTTTAGGGCATCGCTTCCACAAGGTCTGAGAGCCAGAAAAATGCTTGAT
AACCTTTTGGACATGCAGAAGAACAGCGGCCCAGTCGGGTACTCTCTTCAAAATTGA
Transcript >AgabiH97|024700
ATGGCCATCGACAAGTCTATCAAACAAACGTACGACGAGCTGGGCTATGTCGTTGTCCCAGGACTCATTCCCCAG
GAACACTGGAATGATCTAGATGCTGCTTGCGAGAGGGTCGTTCAGAAGACCCGTACGGGCACCTGGTCCCATCGC
AGAACCGTTGGAAAGCAATTCCCGCCATTCGATAATGACAACCCTGATTCCTGGGGTGTGCAGCATGTCATGCAC
CCGCAACTAAATGAACCCGCTTTTGGCAAATGGTACACTTCGGAGGGTTTGCTTGACATCGTCAAAGAACTATTG
GGCTGCAGTGATGAGCAACTGCAGTTAGAACTCTTCAATATGCTCATCAATCCCTTAAGCCACGATTTTGCTCTC
CGCTGGCATCGCGACGATGTTAATGAGAAGGCGTCCGAGGAAGAGGAGCGCAATGCTCTGAACACTTGGCATTAT
GGAGTGCAGTGGAATGCCGCTCTTCGTCCTGATAGCTGCTTATACGTTGTTCCGCGCTCGCACAGCCAAGTGAGG
ACACCGGAACAACGTAAGCTTTCGGAAACTTCAGACGCTCCAGAGAATCCTCTGGACATGCCGGGAGCTATCCGA
GTCACTTTACAACCCGGTGAAACCATATTCTACAATTCAAACATCCTGCACTGCGCCACATACAGTTCTACTTCT
CCTCGAGTCACATTACACGGCTGTATCGGTGACATTAGGGGTGGATCTACAAGGGCGCGTAATGTACTTCAGCAC
GGACTGGAGTGGATGAAGGGCGACGAGTTTAGGGCATCGCTTCCACAAGGTCTGAGAGCCAGAAAAATGCTTGAT
AACCTTTTGGACATGCAGAAGAACAGCGGCCCAGTCGGGTACTCTCTTCAAAATTGA
Gene >AgabiH97|024700
ATGGCCATCGACAAGTCTATCAAACAAACGTACGACGAGCTGGGCTATGTCGTTGTCCCAGGACTCATTCCCCAG
GAACACTGGAATGATCTAGATGCTGCTTGCGAGAGGGTCGTTCAGAAGACCCGTACGGGCACCTGGTCCCATCGC
AGAACCGTTGGAAAGCAATTCCCGCCATTCGATAATGACAACCCTGATTCCTGGGGTGTGCAGCATGTCATGCAC
CCGCAACTAAATGAACCCGCTTTTGGCAAATGGTACACTTCGGAGGGTTTGCTTGACATCGTCAAAGAACTATTG
GGCTGCAGTGATGAGCAACTGCAGTTAGGTTTGTCCGTTGATTGCATGGGATACCAGTGGCTAACGTATCAGAAA
AGAACTCTTCAATATGCTCATCAATCCCTTAAGCCACGATTTTGCTCTCCGCTGGCATCGCGACGATGTTAATGA
GAAGGCGTCCGAGGAAGAGGAGCGCAATGCTCTGAACACTTGGCATTATGGAGTATGTTTAACTGCATGCTAGCG
ATCTTCGGGTACTCACGACAGTCAACTCTAGGTGCAGTGGAATGCGTATGGTCAGATCTATTACTATACACTTCT
TCGCCATTGAAGTAACCTTCTAGCGCTCTTCGTCCTGATAGCTGCTTATACGTTGTTCCGCGCTCGCACAGCCAA
GTGAGGACACCGGAACAACGTAAGCTTTCGGAAACTTCAGACGCTCCAGAGAATCCTCTGGACATGCCGGGAGCT
ATCCGAGTCACTTTACAACGTGAGCAGAATCATCATTATTTCCCATCTGACGCCGCCTGACCACACTGTTAGCCG
GTGAAACCATATTCTACAATTCAAACATCCTGCACTGCGCCACATACAGTTCTACTTCTCCTCGAGTCACATTAC
ACGGCTGTATCGGTGACATTAGGGGTGGATCTACAAGGGCGCGTAATGTACTTCAGCACGGACTGGAGTGGATGA
AGGGCGACGAGTTTAGGGCATCGCTTCCACAAGGTCTGAGAGCCAGAAAAATGCTTGATAACCTTTTGGACATGC
AGAAGAACAGCGGCCCAGTCGGGTACTCTCTTCAAAATTGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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