Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|024120
Gene name
Location	scaffold_11:671835..673116
Strand	-
Gene length (bp)	1281
Transcript length (bp)	1038
Coding sequence length (bp)	1038
Protein length (aa)	346

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF13532	2OG-FeII_Oxy_2	2OG-Fe(II) oxygenase superfamily	9.6E-24	61	269

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp\|Q6NS38\|ALKB2_HUMAN	DNA oxidative demethylase ALKBH2 OS=Homo sapiens GN=ALKBH2 PE=1 SV=1	114	271	2.0E-11
sp\|Q6P6J4\|ALKB2_MOUSE	DNA oxidative demethylase ALKBH2 OS=Mus musculus GN=Alkbh2 PE=1 SV=1	114	271	3.0E-09
sp\|Q58DM4\|ALKB2_BOVIN	DNA oxidative demethylase ALKBH2 OS=Bos taurus GN=ALKBH2 PE=2 SV=1	114	271	2.0E-08
sp\|Q9SIE0\|ALKB2_ARATH	DNA oxidative demethylase ALKBH2 OS=Arabidopsis thaliana GN=ALKBH2 PE=2 SV=2	73	271	1.0E-06

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 24	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|024120 MHLMQTYDHNVPILNPWPTPLLSDSICIVQQQIRELSEPFSALRNDDDYKSFEAFSELAGDAYAKLVEEVDWIKM LHRGGEVPRLVAQQGEIIDEDGSYPIYRHPADESPPLLPFTPTVQLIRDHVQKVLNHPVNHVLIQHYRTGADYIS DHSDKTIDINRHSFIVNVSLGAQRVMTLRQKKDKNAREQERHAPSTPTSSTSTDSTSHHTQPPPRPTQRIPLPDN SLFILGLETNKKWLHGISTDKRPLSTKTPVEQINNGARISLTFRWIGTFVNPTRNTIWGIGARAKNREDAKTILD GTTNATGMKDAENLITAFGEENFDPDFDWEKWYGEGFDVLHFKVN*
Coding	>AgabiH97\|024120 ATGCATCTGATGCAGACTTACGATCATAATGTGCCTATTCTAAATCCTTGGCCAACACCACTTCTCTCCGACTCT ATCTGCATAGTACAACAGCAAATACGTGAACTATCCGAACCATTCTCAGCACTAAGAAATGACGACGACTACAAG AGCTTCGAGGCCTTCTCTGAGCTGGCTGGAGATGCTTATGCAAAGTTGGTTGAGGAAGTTGACTGGATCAAGATG CTGCATCGCGGAGGAGAAGTACCGAGATTAGTTGCACAGCAAGGCGAAATCATAGATGAAGACGGGAGCTATCCG ATATATCGTCATCCTGCAGATGAATCACCCCCACTGTTACCGTTCACACCTACAGTTCAACTTATTCGCGACCAC GTCCAAAAAGTTCTAAATCACCCGGTGAACCACGTCCTAATCCAACATTACCGCACCGGAGCGGATTACATCTCA GACCACTCTGACAAGACCATTGACATCAATCGCCATTCATTCATCGTCAACGTCAGTCTAGGTGCTCAACGTGTT ATGACACTTCGTCAAAAGAAAGATAAAAACGCCAGAGAACAAGAACGACATGCTCCGTCAACACCGACCTCTTCC ACCAGTACCGACTCAACATCCCATCATACTCAACCACCACCTCGCCCAACTCAACGCATCCCTCTCCCCGATAAT TCCTTGTTCATACTCGGCCTTGAAACGAATAAAAAATGGCTTCACGGAATATCCACCGACAAACGTCCACTCTCA ACCAAAACCCCCGTCGAACAAATCAACAACGGTGCCCGCATTAGTCTCACTTTCCGTTGGATCGGCACCTTTGTC AATCCAACTCGAAACACCATTTGGGGTATCGGCGCACGAGCAAAGAACCGCGAAGACGCTAAAACCATTTTAGAT GGTACAACAAATGCTACTGGTATGAAAGACGCTGAGAACCTGATAACGGCTTTTGGCGAGGAGAATTTTGATCCG GACTTTGATTGGGAAAAGTGGTACGGAGAAGGATTTGATGTGCTACATTTCAAAGTAAATTAA
Transcript	>AgabiH97\|024120 ATGCATCTGATGCAGACTTACGATCATAATGTGCCTATTCTAAATCCTTGGCCAACACCACTTCTCTCCGACTCT ATCTGCATAGTACAACAGCAAATACGTGAACTATCCGAACCATTCTCAGCACTAAGAAATGACGACGACTACAAG AGCTTCGAGGCCTTCTCTGAGCTGGCTGGAGATGCTTATGCAAAGTTGGTTGAGGAAGTTGACTGGATCAAGATG CTGCATCGCGGAGGAGAAGTACCGAGATTAGTTGCACAGCAAGGCGAAATCATAGATGAAGACGGGAGCTATCCG ATATATCGTCATCCTGCAGATGAATCACCCCCACTGTTACCGTTCACACCTACAGTTCAACTTATTCGCGACCAC GTCCAAAAAGTTCTAAATCACCCGGTGAACCACGTCCTAATCCAACATTACCGCACCGGAGCGGATTACATCTCA GACCACTCTGACAAGACCATTGACATCAATCGCCATTCATTCATCGTCAACGTCAGTCTAGGTGCTCAACGTGTT ATGACACTTCGTCAAAAGAAAGATAAAAACGCCAGAGAACAAGAACGACATGCTCCGTCAACACCGACCTCTTCC ACCAGTACCGACTCAACATCCCATCATACTCAACCACCACCTCGCCCAACTCAACGCATCCCTCTCCCCGATAAT TCCTTGTTCATACTCGGCCTTGAAACGAATAAAAAATGGCTTCACGGAATATCCACCGACAAACGTCCACTCTCA ACCAAAACCCCCGTCGAACAAATCAACAACGGTGCCCGCATTAGTCTCACTTTCCGTTGGATCGGCACCTTTGTC AATCCAACTCGAAACACCATTTGGGGTATCGGCGCACGAGCAAAGAACCGCGAAGACGCTAAAACCATTTTAGAT GGTACAACAAATGCTACTGGTATGAAAGACGCTGAGAACCTGATAACGGCTTTTGGCGAGGAGAATTTTGATCCG GACTTTGATTGGGAAAAGTGGTACGGAGAAGGATTTGATGTGCTACATTTCAAAGTAAATTAA
Gene	>AgabiH97\|024120 ATGCATCTGATGCAGACTTACGATCATAATGTGCCTATTCTAAATCCTTGGCCAACACCACTTCTCTCCGACTCT ATCTGCATAGTACAACAGCAAATACGTGAACTATCCGAACCATTCTCAGCACTAAGAAATGACGACGACTACAAG AGCTTCGAGGCCTTCTCTGGTAGATCCACAAGAGCCACTAGGGTCTGGTGACTCACGCGTGGTTTATGACTTGTT ACCCTCAGAGCTGGCTGGAGATGCTTATGCAAAGTTGGTTGAGGAAGTTGACTGGATCAAGATGCTGCATCGCGG TACGTTGTGTATTTTACCGTATATAACTCGAAATCGTATTGATTGTGAGGTATTCATAGGAGGAGAAGTACCGAG ATTAGTTGCACAGCAAGGCGAAATCATAGATGAAGACGGGAGGTGAGTTTTGTTTCGTCGCTTAAACTGAATGAG CTGCCAGGTTAAGTGATGATTTAGCTATCCGATATATCGTCATCCTGCAGATGAATCACCCCCACTGTTACCGTT CACACCTACAGTTCAACTTATTCGCGACCACGTCCAAAAAGTAAGCGATTCTAAAACAAAATCGCAAAACCTCGC CGCTGATTACTCTTTATTGATTCCAAGGTTCTAAATCACCCGGTGAACCACGTCCTAATCCAACATTACCGCACC GGAGCGGATTACATCTCAGACCACTCTGACAAGACCATTGACATCAATCGCCATTCATTCATCGTCAACGTCAGT CTAGGTGCTCAACGTGTTATGACACTTCGTCAAAAGAAAGATAAAAACGCCAGAGAACAAGAACGACATGCTCCG TCAACACCGACCTCTTCCACCAGTACCGACTCAACATCCCATCATACTCAACCACCACCTCGCCCAACTCAACGC ATCCCTCTCCCCGATAATTCCTTGTTCATACTCGGCCTTGAAACGAATAAAAAATGGCTTCACGGAATATCCACC GACAAACGTCCACTCTCAACCAAAACCCCCGTCGAACAAATCAACAACGGTGCCCGCATTAGTCTCACTTTCCGT TGGATCGGCACCTTTGTCAATCCAACTCGAAACACCATTTGGGGTATCGGCGCACGAGCAAAGAACCGCGAAGAC GCTAAAACCATTTTAGATGGTACAACAAATGCTACTGGTATGAAAGACGCTGAGAACCTGATAACGGCTTTTGGC GAGGAGAATTTTGATCCGGACTTTGATTGGGAAAAGTGGTACGGAGAAGGATTTGATGTGCTACATTTCAAAGTA AATTAA

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