Fungal Genomics

Agaricus bisporus var bisporus H39 Agaricus bisporus var bisporus H97 Agaricus bisporus var burnettii H119p4 Aspergillus niger CBS 112.32 Aspergillus niger CBS 113.50 Aspergillus niger CBS 115988 Aspergillus niger CBS 115989 Aspergillus niger CBS 118.52 Aspergillus niger CBS 124.48 Aspergillus niger CBS 131.52 Aspergillus niger CBS 133816 Aspergillus niger CBS 147320 Aspergillus niger CBS 147321 Aspergillus niger CBS 147322 Aspergillus niger CBS 147323 Aspergillus niger CBS 147324 Aspergillus niger CBS 147343 Aspergillus niger CBS 147344 Aspergillus niger CBS 147345 Aspergillus niger CBS 147346 Aspergillus niger CBS 147347 Aspergillus niger CBS 147352 Aspergillus niger CBS 147353 Aspergillus niger CBS 147371 Aspergillus niger CBS 147482 Aspergillus niger CBS 630.78 Aspergillus niger CBS 769.97 Niveomyces coronatus CBS 149186 Ophiocordyceps australis 1348a (Ghana) Ophiocordyceps australis map64 (Brazil) Ophiocordyceps camponoti-floridani Ophiocordyceps camponoti-rufipedis Ophiocordyceps kimflemingae Ophiocordyceps subramaniannii Penicillium roqueforti DTO002I6 Penicillium roqueforti DTO003C3 Penicillium roqueforti DTO003H1 (CBS 147308) Penicillium roqueforti DTO006G1 Penicillium roqueforti DTO006G7 Penicillium roqueforti DTO012A1 Penicillium roqueforti DTO012A2 (CBS 147309) Penicillium roqueforti DTO012A6 (CBS 147310) Penicillium roqueforti DTO012A7 Penicillium roqueforti DTO012A8 Penicillium roqueforti DTO012A9 Penicillium roqueforti DTO013E5 Penicillium roqueforti DTO013F2 Penicillium roqueforti DTO013F5 (CBS 147311) Penicillium roqueforti DTO027I6 Penicillium roqueforti DTO032C6 Penicillium roqueforti DTO039G3 Penicillium roqueforti DTO046C5 Penicillium roqueforti DTO070G2 (CBS 147317) Penicillium roqueforti DTO081F9 (CBS 147318) Penicillium roqueforti DTO101D6 (CBS 147325) Penicillium roqueforti DTO102I9 (CBS 147326) Penicillium roqueforti DTO126G2 (CBS 147330) Penicillium roqueforti DTO127F7 (CBS 147331) Penicillium roqueforti DTO127F9 (CBS 147332) Penicillium roqueforti DTO130C1 (CBS 147333) Penicillium roqueforti DTO163C3 (CBS 147337) Penicillium roqueforti DTO163F5 (CBS 147338) Penicillium roqueforti DTO163G4 (CBS 147339) Penicillium roqueforti DTO265D5 (CBS 147372) Penicillium roqueforti DTO369A1 (CBS 147354) Penicillium roqueforti DTO375B1 (CBS 147355) Penicillium roqueforti DTO377G2 (LCP 96.3914a) Penicillium roqueforti LCP96 04111 Rhodonia placenta FPRL280 Torrubiellomyces zombiae CBS 149187

General Properties

Protein ID	AgabiH97|024100
Gene name
Location	scaffold_11:665122..666404
Strand	+
Gene length (bp)	1282
Transcript length (bp)	1074
Coding sequence length (bp)	1074
Protein length (aa)	358

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PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF12146	Hydrolase_4	Serine aminopeptidase, S33	1.8E-15	94	327
PF00561	Abhydrolase_1	alpha/beta hydrolase fold	9.0E-11	97	199
PF12697	Abhydrolase_6	Alpha/beta hydrolase family	3.0E-10	98	339

Swissprot hits

Swissprot ID	Swissprot Description	Start	End	E-value
sp|P9WGS3|EPHD_MYCTU	Probable oxidoreductase EphD OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=ephD PE=1 SV=1	74	159	7.0E-09
sp|P9WGS2|EPHD_MYCTO	Probable oxidoreductase EphD OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=ephD PE=3 SV=1	74	159	7.0E-09
sp|P66778|EPHD_MYCBO	Probable oxidoreductase EphD OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=ephD PE=3 SV=1	74	159	7.0E-09

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 65	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label	Description	Expression (RPKM)	Confidence interval (low)	Confidence interval (high)
Casing	Casing mycelium	106.98	52.43	161.53
Initials	Initials knots	637.49	331.24	943.74
Pileal_Stipeal_center	Stage I stipe center	976.53	452.29	1500.77
Pileal_Stipeal_shell	Stage I stipe shell	2111.34	731.64	3491.04
DIF_stipe_center	Stage II stipe center	368.90	206.38	531.41
DIF_stipe_shell	Stage II stipe shell	360.13	198.84	521.42
DIF_stipe_skin	Stage II stipe skin	1119.67	492.75	1746.60
DIF_cap_skin	Stage II cap skin	3729.65	532.02	6927.28
DIF_cap_tissue	Stage II cap tissue	1484.30	420.98	2547.61
DIF_gill_tissue	Stage II gill tissue	642.63	287.47	997.78
YFB_stipe_center	Young fruiting body stipe center	121.60	70.92	172.29
YFB_stipe_shell	Young fruiting body stipe shell	118.23	68.98	167.48
YFB_stipe_skin	Young fruiting body stipe skin	970.66	406.29	1535.03
YFB_cap_skin	Young fruiting body cap skin	4302.06	70.92	8533.20
YFB_cap_tissue	Young fruiting body cap tissue	323.12	112.38	533.85
YFB_gill_tissue	Young fruiting body gill tissue	6093.62	0.00	13652.10
YFB_veil	Young fruiting body veil	1462.75	476.99	2448.51

Differential expression

Label1	Label2	Q-value	Significant difference
Casing	DIF_gill_tissue	0.000613	yes
Casing	YFB_stipe_center	0.803744	no
Casing	YFB_stipe_shell	0.853833	no
Casing	YFB_stipe_skin	0.000613	yes
Casing	YFB_cap_skin	0.000613	yes
Casing	YFB_cap_tissue	0.003365	yes
Casing	YFB_gill_tissue	0.000613	yes
Casing	YFB_veil	0.000613	yes
Casing	Initials	0.000613	yes
Casing	Pileal_Stipeal_center	0.000613	yes
Casing	Pileal_Stipeal_shell	0.000613	yes
Casing	DIF_stipe_center	0.000613	yes
Casing	DIF_stipe_shell	0.000613	yes
Casing	DIF_stipe_skin	0.000613	yes
Casing	DIF_cap_skin	0.000613	yes
Casing	DIF_cap_tissue	0.000613	yes
DIF_gill_tissue	YFB_stipe_center	0.000613	yes
DIF_gill_tissue	YFB_stipe_shell	0.000613	yes
DIF_gill_tissue	YFB_stipe_skin	0.352521	no
DIF_gill_tissue	YFB_cap_skin	0.002951	yes
DIF_gill_tissue	YFB_cap_tissue	0.090496	no
DIF_gill_tissue	YFB_gill_tissue	0.009446	yes
DIF_gill_tissue	YFB_veil	0.037818	yes
YFB_stipe_center	YFB_stipe_shell	0.960533	no
YFB_stipe_center	YFB_stipe_skin	0.000613	yes
YFB_stipe_center	YFB_cap_skin	0.000613	yes
YFB_stipe_center	YFB_cap_tissue	0.008791	yes
YFB_stipe_center	YFB_gill_tissue	0.000613	yes
YFB_stipe_center	YFB_veil	0.000613	yes
YFB_stipe_shell	YFB_stipe_skin	0.000613	yes
YFB_stipe_shell	YFB_cap_skin	0.000613	yes
YFB_stipe_shell	YFB_cap_tissue	0.006742	yes
YFB_stipe_shell	YFB_gill_tissue	0.000613	yes
YFB_stipe_shell	YFB_veil	0.000613	yes
YFB_stipe_skin	YFB_cap_skin	0.014956	yes
YFB_stipe_skin	YFB_cap_tissue	0.003765	yes
YFB_stipe_skin	YFB_gill_tissue	0.027451	yes
YFB_stipe_skin	YFB_veil	0.397593	no
YFB_cap_skin	YFB_cap_tissue	0.000613	yes
YFB_cap_skin	YFB_gill_tissue	0.773791	no
YFB_cap_skin	YFB_veil	0.083328	no
YFB_cap_tissue	YFB_gill_tissue	0.001625	yes
YFB_cap_tissue	YFB_veil	0.000613	yes
YFB_gill_tissue	YFB_veil	0.074301	no
Initials	DIF_gill_tissue	0.989847	no
Initials	YFB_stipe_center	0.000613	yes
Initials	YFB_stipe_shell	0.000613	yes
Initials	YFB_stipe_skin	0.289477	no
Initials	YFB_cap_skin	0.002951	yes
Initials	YFB_cap_tissue	0.079123	no
Initials	YFB_gill_tissue	0.009123	yes
Initials	YFB_veil	0.027451	yes
Initials	Pileal_Stipeal_center	0.260698	no
Initials	Pileal_Stipeal_shell	0.001625	yes
Initials	DIF_stipe_center	0.075734	no
Initials	DIF_stipe_shell	0.066767	no
Initials	DIF_stipe_skin	0.125578	no
Initials	DIF_cap_skin	0.001140	yes
Initials	DIF_cap_tissue	0.055979	no
Pileal_Stipeal_center	DIF_gill_tissue	0.328610	no
Pileal_Stipeal_center	YFB_stipe_center	0.000613	yes
Pileal_Stipeal_center	YFB_stipe_shell	0.000613	yes
Pileal_Stipeal_center	YFB_stipe_skin	0.992628	no
Pileal_Stipeal_center	YFB_cap_skin	0.015242	yes
Pileal_Stipeal_center	YFB_cap_tissue	0.004160	yes
Pileal_Stipeal_center	YFB_gill_tissue	0.027943	yes
Pileal_Stipeal_center	YFB_veil	0.395889	no
Pileal_Stipeal_center	Pileal_Stipeal_shell	0.053965	no
Pileal_Stipeal_center	DIF_stipe_center	0.004548	yes
Pileal_Stipeal_center	DIF_stipe_shell	0.004548	yes
Pileal_Stipeal_center	DIF_stipe_skin	0.829027	no
Pileal_Stipeal_center	DIF_cap_skin	0.009773	yes
Pileal_Stipeal_center	DIF_cap_tissue	0.419051	no
Pileal_Stipeal_shell	DIF_gill_tissue	0.001625	yes
Pileal_Stipeal_shell	YFB_stipe_center	0.000613	yes
Pileal_Stipeal_shell	YFB_stipe_shell	0.000613	yes
Pileal_Stipeal_shell	YFB_stipe_skin	0.056170	no
Pileal_Stipeal_shell	YFB_cap_skin	0.262471	no
Pileal_Stipeal_shell	YFB_cap_tissue	0.000613	yes
Pileal_Stipeal_shell	YFB_gill_tissue	0.185943	no
Pileal_Stipeal_shell	YFB_veil	0.499736	no
Pileal_Stipeal_shell	DIF_stipe_center	0.000613	yes
Pileal_Stipeal_shell	DIF_stipe_shell	0.000613	yes
Pileal_Stipeal_shell	DIF_stipe_skin	0.135006	no
Pileal_Stipeal_shell	DIF_cap_skin	0.349814	no
Pileal_Stipeal_shell	DIF_cap_tissue	0.558528	no
DIF_stipe_center	DIF_gill_tissue	0.115194	no
DIF_stipe_center	YFB_stipe_center	0.000613	yes
DIF_stipe_center	YFB_stipe_shell	0.000613	yes
DIF_stipe_center	YFB_stipe_skin	0.004160	yes
DIF_stipe_center	YFB_cap_skin	0.000613	yes
DIF_stipe_center	YFB_cap_tissue	0.819976	no
DIF_stipe_center	YFB_gill_tissue	0.002084	yes
DIF_stipe_center	YFB_veil	0.000613	yes
DIF_stipe_center	DIF_stipe_shell	0.968507	no
DIF_stipe_center	DIF_stipe_skin	0.000613	yes
DIF_stipe_center	DIF_cap_skin	0.000613	yes
DIF_stipe_center	DIF_cap_tissue	0.001140	yes
DIF_stipe_shell	DIF_gill_tissue	0.102673	no
DIF_stipe_shell	YFB_stipe_center	0.000613	yes
DIF_stipe_shell	YFB_stipe_shell	0.000613	yes
DIF_stipe_shell	YFB_stipe_skin	0.002084	yes
DIF_stipe_shell	YFB_cap_skin	0.000613	yes
DIF_stipe_shell	YFB_cap_tissue	0.861175	no
DIF_stipe_shell	YFB_gill_tissue	0.002084	yes
DIF_stipe_shell	YFB_veil	0.000613	yes
DIF_stipe_shell	DIF_stipe_skin	0.000613	yes
DIF_stipe_shell	DIF_cap_skin	0.000613	yes
DIF_stipe_shell	DIF_cap_tissue	0.001140	yes
DIF_stipe_skin	DIF_gill_tissue	0.161964	no
DIF_stipe_skin	YFB_stipe_center	0.000613	yes
DIF_stipe_skin	YFB_stipe_shell	0.000613	yes
DIF_stipe_skin	YFB_stipe_skin	0.824726	no
DIF_stipe_skin	YFB_cap_skin	0.026461	yes
DIF_stipe_skin	YFB_cap_tissue	0.000613	yes
DIF_stipe_skin	YFB_gill_tissue	0.038942	yes
DIF_stipe_skin	YFB_veil	0.634518	no
DIF_stipe_skin	DIF_cap_skin	0.025458	yes
DIF_stipe_skin	DIF_cap_tissue	0.636616	no
DIF_cap_skin	DIF_gill_tissue	0.001140	yes
DIF_cap_skin	YFB_stipe_center	0.000613	yes
DIF_cap_skin	YFB_stipe_shell	0.000613	yes
DIF_cap_skin	YFB_stipe_skin	0.011350	yes
DIF_cap_skin	YFB_cap_skin	0.903836	no
DIF_cap_skin	YFB_cap_tissue	0.000613	yes
DIF_cap_skin	YFB_gill_tissue	0.628774	no
DIF_cap_skin	YFB_veil	0.088269	no
DIF_cap_skin	DIF_cap_tissue	0.107449	no
DIF_cap_tissue	DIF_gill_tissue	0.063183	no
DIF_cap_tissue	YFB_stipe_center	0.000613	yes
DIF_cap_tissue	YFB_stipe_shell	0.000613	yes
DIF_cap_tissue	YFB_stipe_skin	0.420141	no
DIF_cap_tissue	YFB_cap_skin	0.086247	no
DIF_cap_tissue	YFB_cap_tissue	0.000613	yes
DIF_cap_tissue	YFB_gill_tissue	0.081927	no
DIF_cap_tissue	YFB_veil	0.986481	no

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97|024100 MNTASSSRVLDDDVEKLTKVKGISSYSKPSVDCILNVNSSGDRKSLTLDNAARSSTVANLDDYDCCYGNGSTESR MLVSADGTEIYANAVGDPLKQAIVFIHGFVWSFMAFDDIFEDVEWMSRFYLVRYDVRGHGRSGKPEGDEAWEWKR FAEDFDAVVEAYGLHKPFVAGWSLGGCHLLDILTLHPVDYVAGIINIAGATYLDDTQLEKLATPEGRDYIHRMSV LPSVEDFQSGAKDFVDACCRTLPYEVRERCLGNIMIQPRSTMVHSLTRKQRVETFEMVGKTMLPCLLIFGDEDEL IMIDELERQYREVWRNLTVEVVKGGCHVPWTKTQRDVAAVFSKKTLAWIDCVMQSQN*
Coding	>AgabiH97|024100 ATGAACACCGCCTCTTCATCCAGAGTCCTAGACGACGACGTCGAGAAGTTAACGAAAGTCAAAGGAATTAGTAGC TATAGTAAACCCTCTGTCGATTGTATCTTGAACGTTAACTCCTCGGGCGACCGGAAAAGTTTGACATTGGATAAT GCTGCTCGTAGCAGTACTGTTGCCAATTTGGATGATTACGATTGCTGTTATGGGAATGGGAGCACGGAGTCGAGG ATGCTGGTTTCTGCGGATGGAACGGAGATTTATGCGAATGCGGTTGGTGATCCTTTGAAACAGGCTATTGTGTTT ATACATGGGTTTGTTTGGAGTTTTATGGCTTTTGATGATATTTTTGAGGATGTTGAATGGATGAGTCGGTTTTAT CTTGTTCGGTATGATGTGAGAGGTCATGGGAGGAGTGGAAAACCGGAAGGGGATGAAGCTTGGGAGTGGAAGAGG TTTGCGGAAGATTTTGATGCTGTTGTTGAAGCGTACGGGCTTCATAAACCTTTTGTTGCTGGTTGGAGTTTAGGA GGTTGTCATTTGTTGGATATACTCACACTTCATCCGGTGGATTATGTTGCTGGCATTATTAACATCGCAGGTGCG ACGTATTTGGATGATACGCAATTGGAGAAATTGGCTACTCCGGAAGGAAGAGATTATATTCATCGAATGTCAGTT TTACCGAGTGTTGAGGATTTTCAATCTGGAGCAAAGGATTTTGTGGATGCGTGTTGTCGGACGTTGCCATATGAA GTGCGAGAACGGTGTCTAGGGAATATAATGATCCAACCGAGAAGTACTATGGTTCATTCTCTTACGAGAAAACAG AGGGTGGAGACGTTTGAGATGGTGGGGAAGACGATGTTGCCTTGTTTACTGATTTTTGGGGATGAAGATGAGTTG ATTATGATTGATGAGTTGGAGAGACAGTATAGGGAGGTGTGGAGGAATTTGACTGTGGAAGTGGTAAAGGGCGGT TGCCATGTTCCGTGGACGAAGACGCAACGAGATGTGGCCGCGGTTTTTAGCAAGAAGACGTTGGCTTGGATAGAT TGCGTTATGCAGTCTCAGAATTAG
Transcript	>AgabiH97|024100 ATGAACACCGCCTCTTCATCCAGAGTCCTAGACGACGACGTCGAGAAGTTAACGAAAGTCAAAGGAATTAGTAGC TATAGTAAACCCTCTGTCGATTGTATCTTGAACGTTAACTCCTCGGGCGACCGGAAAAGTTTGACATTGGATAAT GCTGCTCGTAGCAGTACTGTTGCCAATTTGGATGATTACGATTGCTGTTATGGGAATGGGAGCACGGAGTCGAGG ATGCTGGTTTCTGCGGATGGAACGGAGATTTATGCGAATGCGGTTGGTGATCCTTTGAAACAGGCTATTGTGTTT ATACATGGGTTTGTTTGGAGTTTTATGGCTTTTGATGATATTTTTGAGGATGTTGAATGGATGAGTCGGTTTTAT CTTGTTCGGTATGATGTGAGAGGTCATGGGAGGAGTGGAAAACCGGAAGGGGATGAAGCTTGGGAGTGGAAGAGG TTTGCGGAAGATTTTGATGCTGTTGTTGAAGCGTACGGGCTTCATAAACCTTTTGTTGCTGGTTGGAGTTTAGGA GGTTGTCATTTGTTGGATATACTCACACTTCATCCGGTGGATTATGTTGCTGGCATTATTAACATCGCAGGTGCG ACGTATTTGGATGATACGCAATTGGAGAAATTGGCTACTCCGGAAGGAAGAGATTATATTCATCGAATGTCAGTT TTACCGAGTGTTGAGGATTTTCAATCTGGAGCAAAGGATTTTGTGGATGCGTGTTGTCGGACGTTGCCATATGAA GTGCGAGAACGGTGTCTAGGGAATATAATGATCCAACCGAGAAGTACTATGGTTCATTCTCTTACGAGAAAACAG AGGGTGGAGACGTTTGAGATGGTGGGGAAGACGATGTTGCCTTGTTTACTGATTTTTGGGGATGAAGATGAGTTG ATTATGATTGATGAGTTGGAGAGACAGTATAGGGAGGTGTGGAGGAATTTGACTGTGGAAGTGGTAAAGGGCGGT TGCCATGTTCCGTGGACGAAGACGCAACGAGATGTGGCCGCGGTTTTTAGCAAGAAGACGTTGGCTTGGATAGAT TGCGTTATGCAGTCTCAGAATTAG
Gene	>AgabiH97|024100 ATGAACACCGCCTCTTCATCCAGAGTCCTAGACGACGACGTCGAGAAGTTAACGAAAGTCAAAGGAATTAGTAGC TATAGTAAACCCTCTGTCGATTGTATCTTGAACGTTAACTCCTCGGGCGACCGGAAAAGTTTGACATTGGATAAT GCTGCTCGTAGCAGTACTGTTGCCAATTTGGATGATTACGATTGCTGTTATGGGAATGGGAGCACGGAGTCGAGG ATGCTGGTTTCTGCGGATGGAACGGAGATTTATGCGAATGCGGTTGGTGATCCTTTGAAACAGGCTATTGTGTTT ATACATGGGTTTGTTTGGAGTTTTATGGCTTTTGATGATATTTTTGAGGATGTTGAATGGATGAGTCGGTTTTAT CTTGTGAGTTTTTCATAATCCTCTCTTTAGGTAAAGTTGAGTTTTTGACGTTTGGATAAAATGAAGGTTCGGTAT GATGTGAGAGGTCATGGGAGGAGTGGAAAACCGGAAGGGGATGAAGCTTGGGAGTGGAAGAGGTTTGCGGAAGAT TTTGATGCTGTTGTTGAAGCGTACGGGCTTCATAAACCTTTTGTTGCTGGTTGGTACGTCGTTTTTTTGTTTATG ATTTCTTCTCGTGGGTGAATTATTTCTCATCATTTTGGATATTCATAGGAGTTTAGGAGGTGAGTCTATCACAAA GTTTAAAATTAAATTTAGCCGGAGTACATATAATTAACATTGCGATTTTTTTAATGTAGGTTGTCATTTGTTGGA TATACTCACACTTCATCCGGTGGATTATGTTGCTGGCATTATTAACATCGCAGGTGCGACGTATTTGGATGATAC GCAATTGGAGAAATTGGCTACTCCGGAAGGAAGAGATTATATTCATCGAATGTCAGTTTTACCGAGTGTTGAGGA TTTTCAATCTGGAGCAAAGGATTTTGTGGATGCGTGTTGTCGGACGTTGCCATATGAAGTGCGAGAACGGTGTCT AGGGAATATAATGATCCAACCGAGAAGTACTATGGTTCATTCTCTTACGAGAAAACAGAGGGTGGAGACGTTTGA GATGGTGGGGAAGACGATGTTGCCTTGTTTACTGATTTTTGGGGATGAAGATGAGTTGATTATGATTGATGAGTT GGAGAGACAGTATAGGGAGGTGTGGAGGAATTTGACTGTGGAAGTGGTAAAGGGCGGTTGCCATGTTCCGTGGAC GAAGACGCAACGAGATGTGGCCGCGGTTTTTAGCAAGAAGACGTTGGCTTGGATAGATTGCGTTATGCAGTCTCA GAATTAG