Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|023720
Gene name
Locationscaffold_11:577435..578764
Strand-
Gene length (bp)1329
Transcript length (bp)1056
Coding sequence length (bp)1056
Protein length (aa) 352

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF20434 BD-FAE BD-FAE 2.5E-18 96 213
PF07859 Abhydrolase_3 alpha/beta hydrolase fold 2.5E-10 113 235
PF00135 COesterase Carboxylesterase family 5.2E-08 91 217

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|Q29499|ACES_RABIT Acetylcholinesterase (Fragment) OS=Oryctolagus cuniculus GN=ACHE PE=2 SV=1 90 238 2.0E-06
sp|P23795|ACES_BOVIN Acetylcholinesterase OS=Bos taurus GN=ACHE PE=1 SV=2 90 238 2.0E-06
sp|O62763|ACES_FELCA Acetylcholinesterase OS=Felis catus GN=ACHE PE=3 SV=1 90 238 2.0E-06
sp|Q9SX25|CXE6_ARATH Probable carboxylesterase 6 OS=Arabidopsis thaliana GN=CXE6 PE=2 SV=1 98 247 3.0E-06
sp|P21836|ACES_MOUSE Acetylcholinesterase OS=Mus musculus GN=Ache PE=1 SV=1 90 238 5.0E-06

GO

GO Term Description Terminal node
GO:0016787 hydrolase activity Yes
GO:0003824 catalytic activity No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 23 0.5

Transmembrane Domains

Domain # Start End Length
1 2 24 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 3.39 1.25 5.53
Initials Initials knots 5.90 2.55 9.24
Pileal_Stipeal_center Stage I stipe center 2.72 0.99 4.45
Pileal_Stipeal_shell Stage I stipe shell 3.23 1.19 5.26
DIF_stipe_center Stage II stipe center 3.35 1.30 5.40
DIF_stipe_shell Stage II stipe shell 2.53 0.89 4.17
DIF_stipe_skin Stage II stipe skin 1.76 0.54 2.98
DIF_cap_skin Stage II cap skin 2.78 0.99 4.57
DIF_cap_tissue Stage II cap tissue 2.29 0.75 3.84
DIF_gill_tissue Stage II gill tissue 2.59 0.84 4.34
YFB_stipe_center Young fruiting body stipe center 5.10 2.17 8.04
YFB_stipe_shell Young fruiting body stipe shell 4.31 1.73 6.88
YFB_stipe_skin Young fruiting body stipe skin 1.78 0.55 3.00
YFB_cap_skin Young fruiting body cap skin 1.22 0.31 2.13
YFB_cap_tissue Young fruiting body cap tissue 1.50 0.40 2.61
YFB_gill_tissue Young fruiting body gill tissue 1.06 0.21 1.91
YFB_veil Young fruiting body veil 1.56 0.46 2.66

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.683494 no
Casing YFB_stipe_center 0.409533 no
Casing YFB_stipe_shell 0.704058 no
Casing YFB_stipe_skin 0.176925 no
Casing YFB_cap_skin 0.029408 yes
Casing YFB_cap_tissue 0.088613 no
Casing YFB_gill_tissue 0.025711 yes
Casing YFB_veil 0.093997 no
Casing Initials 0.222255 no
Casing Pileal_Stipeal_center 0.742135 no
Casing Pileal_Stipeal_shell 0.954227 no
Casing DIF_stipe_center 0.989184 no
Casing DIF_stipe_shell 0.630458 no
Casing DIF_stipe_skin 0.169705 no
Casing DIF_cap_skin 0.779173 no
Casing DIF_cap_tissue 0.496682 no
DIF_gill_tissue YFB_stipe_center 0.132709 no
DIF_gill_tissue YFB_stipe_shell 0.319049 no
DIF_gill_tissue YFB_stipe_skin 0.543305 no
DIF_gill_tissue YFB_cap_skin 0.145518 no
DIF_gill_tissue YFB_cap_tissue 0.330386 no
DIF_gill_tissue YFB_gill_tissue 0.097608 no
DIF_gill_tissue YFB_veil 0.367818 no
YFB_stipe_center YFB_stipe_shell 0.799919 no
YFB_stipe_center YFB_stipe_skin 0.010093 yes
YFB_stipe_center YFB_cap_skin 0.001625 yes
YFB_stipe_center YFB_cap_tissue 0.003765 yes
YFB_stipe_center YFB_gill_tissue 0.004160 yes
YFB_stipe_center YFB_veil 0.006742 yes
YFB_stipe_shell YFB_stipe_skin 0.039165 yes
YFB_stipe_shell YFB_cap_skin 0.006032 yes
YFB_stipe_shell YFB_cap_tissue 0.014956 yes
YFB_stipe_shell YFB_gill_tissue 0.006387 yes
YFB_stipe_shell YFB_veil 0.018344 yes
YFB_stipe_skin YFB_cap_skin 0.572339 no
YFB_stipe_skin YFB_cap_tissue 0.844574 no
YFB_stipe_skin YFB_gill_tissue 0.412526 no
YFB_stipe_skin YFB_veil 0.882539 no
YFB_cap_skin YFB_cap_tissue 0.803312 no
YFB_cap_skin YFB_gill_tissue 0.880633 no
YFB_cap_skin YFB_veil 0.751835 no
YFB_cap_tissue YFB_gill_tissue 0.636040 no
YFB_cap_tissue YFB_veil 0.968799 no
YFB_gill_tissue YFB_veil 0.578285 no
Initials DIF_gill_tissue 0.058542 no
Initials YFB_stipe_center 0.829521 no
Initials YFB_stipe_shell 0.555495 no
Initials YFB_stipe_skin 0.003765 yes
Initials YFB_cap_skin 0.000613 yes
Initials YFB_cap_tissue 0.001625 yes
Initials YFB_gill_tissue 0.000613 yes
Initials YFB_veil 0.001140 yes
Initials Pileal_Stipeal_center 0.063570 no
Initials Pileal_Stipeal_shell 0.174368 no
Initials DIF_stipe_center 0.191686 no
Initials DIF_stipe_shell 0.033674 yes
Initials DIF_stipe_skin 0.005302 yes
Initials DIF_cap_skin 0.073043 no
Initials DIF_cap_tissue 0.021846 yes
Pileal_Stipeal_center DIF_gill_tissue 0.957054 no
Pileal_Stipeal_center YFB_stipe_center 0.143206 no
Pileal_Stipeal_center YFB_stipe_shell 0.352603 no
Pileal_Stipeal_center YFB_stipe_skin 0.448054 no
Pileal_Stipeal_center YFB_cap_skin 0.100566 no
Pileal_Stipeal_center YFB_cap_tissue 0.251432 no
Pileal_Stipeal_center YFB_gill_tissue 0.073043 no
Pileal_Stipeal_center YFB_veil 0.280063 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.814860 no
Pileal_Stipeal_center DIF_stipe_center 0.749700 no
Pileal_Stipeal_center DIF_stipe_shell 0.933586 no
Pileal_Stipeal_center DIF_stipe_skin 0.432554 no
Pileal_Stipeal_center DIF_cap_skin 0.979661 no
Pileal_Stipeal_center DIF_cap_tissue 0.822742 no
Pileal_Stipeal_shell DIF_gill_tissue 0.753194 no
Pileal_Stipeal_shell YFB_stipe_center 0.340893 no
Pileal_Stipeal_shell YFB_stipe_shell 0.622063 no
Pileal_Stipeal_shell YFB_stipe_skin 0.228924 no
Pileal_Stipeal_shell YFB_cap_skin 0.035993 yes
Pileal_Stipeal_shell YFB_cap_tissue 0.116263 no
Pileal_Stipeal_shell YFB_gill_tissue 0.033211 yes
Pileal_Stipeal_shell YFB_veil 0.123655 no
Pileal_Stipeal_shell DIF_stipe_center 0.964072 no
Pileal_Stipeal_shell DIF_stipe_shell 0.705282 no
Pileal_Stipeal_shell DIF_stipe_skin 0.220332 no
Pileal_Stipeal_shell DIF_cap_skin 0.842284 no
Pileal_Stipeal_shell DIF_cap_tissue 0.572650 no
DIF_stipe_center DIF_gill_tissue 0.688936 no
DIF_stipe_center YFB_stipe_center 0.371230 no
DIF_stipe_center YFB_stipe_shell 0.673300 no
DIF_stipe_center YFB_stipe_skin 0.176182 no
DIF_stipe_center YFB_cap_skin 0.025963 yes
DIF_stipe_center YFB_cap_tissue 0.088442 no
DIF_stipe_center YFB_gill_tissue 0.026461 yes
DIF_stipe_center YFB_veil 0.094492 no
DIF_stipe_center DIF_stipe_shell 0.635387 no
DIF_stipe_center DIF_stipe_skin 0.167754 no
DIF_stipe_center DIF_cap_skin 0.787964 no
DIF_stipe_center DIF_cap_tissue 0.500481 no
DIF_stipe_shell DIF_gill_tissue 0.978489 no
DIF_stipe_shell YFB_stipe_center 0.090658 no
DIF_stipe_shell YFB_stipe_shell 0.255586 no
DIF_stipe_shell YFB_stipe_skin 0.546247 no
DIF_stipe_shell YFB_cap_skin 0.139851 no
DIF_stipe_shell YFB_cap_tissue 0.328346 no
DIF_stipe_shell YFB_gill_tissue 0.098276 no
DIF_stipe_shell YFB_veil 0.363792 no
DIF_stipe_shell DIF_stipe_skin 0.528989 no
DIF_stipe_shell DIF_cap_skin 0.909230 no
DIF_stipe_shell DIF_cap_tissue 0.906784 no
DIF_stipe_skin DIF_gill_tissue 0.526057 no
DIF_stipe_skin YFB_stipe_center 0.009773 yes
DIF_stipe_skin YFB_stipe_shell 0.042260 yes
DIF_stipe_skin YFB_stipe_skin 0.993593 no
DIF_stipe_skin YFB_cap_skin 0.586070 no
DIF_stipe_skin YFB_cap_tissue 0.852643 no
DIF_stipe_skin YFB_gill_tissue 0.418891 no
DIF_stipe_skin YFB_veil 0.890007 no
DIF_stipe_skin DIF_cap_skin 0.414928 no
DIF_stipe_skin DIF_cap_tissue 0.704974 no
DIF_cap_skin DIF_gill_tissue 0.935437 no
DIF_cap_skin YFB_stipe_center 0.172433 no
DIF_cap_skin YFB_stipe_shell 0.399284 no
DIF_cap_skin YFB_stipe_skin 0.427344 no
DIF_cap_skin YFB_cap_skin 0.092503 no
DIF_cap_skin YFB_cap_tissue 0.236682 no
DIF_cap_skin YFB_gill_tissue 0.064705 no
DIF_cap_skin YFB_veil 0.264404 no
DIF_cap_skin DIF_cap_tissue 0.792247 no
DIF_cap_tissue DIF_gill_tissue 0.886752 no
DIF_cap_tissue YFB_stipe_center 0.066207 no
DIF_cap_tissue YFB_stipe_shell 0.179826 no
DIF_cap_tissue YFB_stipe_skin 0.713566 no
DIF_cap_tissue YFB_cap_skin 0.242880 no
DIF_cap_tissue YFB_cap_tissue 0.485285 no
DIF_cap_tissue YFB_gill_tissue 0.161171 no
DIF_cap_tissue YFB_veil 0.528926 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|023720
MFLFPFILVFTVVYSLFSTVTSTLRQHYFRLFQALSKYKEVMDAVSRLKDEGKIEIFDVLGPTVMAFNEAMNNDL
SAITGVQRSTFKYGTEERHQLDIYYPPTIQSSKTPVLFWIYGGGFVAGDRVLPLPSLSYPNVGAFFARQGAIMVV
PDYRLASPPMSAQYPKPVEDIRDAVQWITANRDKLMSQTTPNPDTDNIFMLGHSAGAVHLATLLLEPEVLAVHSP
LRSKIRGAVLLAGYYYYDPRSQLGEPFQLYYGDKQESHSALTLLRSAKSKGLNTLPNILFGESEWDPPIVEEIRK
KFRHELETFLQRPINHLIAKRHNHISIFAALSTGQGEEWALEVMDWIRSLA*
Coding >AgabiH97|023720
ATGTTTTTATTTCCTTTTATTCTCGTATTTACCGTTGTTTACTCTTTATTTTCAACGGTAACTTCAACGTTACGA
CAACACTACTTCCGACTCTTTCAGGCTTTGAGCAAGTACAAAGAAGTCATGGACGCCGTATCGAGGTTGAAAGAT
GAAGGGAAAATAGAGATTTTTGATGTTCTTGGTCCCACTGTTATGGCTTTTAATGAAGCCATGAACAATGATTTG
TCTGCTATTACTGGCGTGCAGAGGTCTACATTCAAGTACGGAACCGAAGAACGCCACCAACTCGATATATACTAT
CCTCCGACAATACAATCGTCGAAAACACCTGTCCTCTTCTGGATTTATGGAGGCGGTTTTGTAGCAGGAGATCGC
GTCCTTCCTCTTCCCTCACTGAGCTATCCTAATGTCGGCGCATTCTTTGCTCGGCAAGGCGCTATCATGGTTGTT
CCCGACTATCGCCTTGCGTCCCCTCCTATGTCTGCTCAATACCCTAAACCGGTTGAAGACATACGAGACGCCGTT
CAGTGGATAACCGCAAATCGAGATAAACTTATGAGTCAAACCACGCCGAACCCCGACACAGATAACATCTTCATG
CTTGGTCATTCAGCTGGAGCAGTTCACCTTGCCACGTTATTGCTGGAACCCGAAGTTCTTGCCGTGCATTCTCCT
CTCCGATCCAAAATTAGAGGTGCCGTTCTCCTGGCAGGGTATTATTACTATGATCCCCGTTCTCAGTTGGGCGAG
CCCTTCCAGCTGTATTATGGCGATAAGCAGGAATCTCATTCGGCCCTCACCTTGTTGAGATCAGCCAAAAGTAAA
GGACTCAATACGCTACCGAATATCTTGTTCGGTGAAAGCGAGTGGGATCCTCCGATTGTCGAGGAAATCAGGAAG
AAATTTCGGCATGAACTCGAGACTTTCCTTCAGCGACCCATCAACCATTTGATCGCCAAAAGGCATAATCATATC
AGTATATTCGCTGCTCTTTCGACTGGGCAAGGAGAGGAATGGGCTTTGGAGGTGATGGATTGGATACGGTCTCTT
GCATAA
Transcript >AgabiH97|023720
ATGTTTTTATTTCCTTTTATTCTCGTATTTACCGTTGTTTACTCTTTATTTTCAACGGTAACTTCAACGTTACGA
CAACACTACTTCCGACTCTTTCAGGCTTTGAGCAAGTACAAAGAAGTCATGGACGCCGTATCGAGGTTGAAAGAT
GAAGGGAAAATAGAGATTTTTGATGTTCTTGGTCCCACTGTTATGGCTTTTAATGAAGCCATGAACAATGATTTG
TCTGCTATTACTGGCGTGCAGAGGTCTACATTCAAGTACGGAACCGAAGAACGCCACCAACTCGATATATACTAT
CCTCCGACAATACAATCGTCGAAAACACCTGTCCTCTTCTGGATTTATGGAGGCGGTTTTGTAGCAGGAGATCGC
GTCCTTCCTCTTCCCTCACTGAGCTATCCTAATGTCGGCGCATTCTTTGCTCGGCAAGGCGCTATCATGGTTGTT
CCCGACTATCGCCTTGCGTCCCCTCCTATGTCTGCTCAATACCCTAAACCGGTTGAAGACATACGAGACGCCGTT
CAGTGGATAACCGCAAATCGAGATAAACTTATGAGTCAAACCACGCCGAACCCCGACACAGATAACATCTTCATG
CTTGGTCATTCAGCTGGAGCAGTTCACCTTGCCACGTTATTGCTGGAACCCGAAGTTCTTGCCGTGCATTCTCCT
CTCCGATCCAAAATTAGAGGTGCCGTTCTCCTGGCAGGGTATTATTACTATGATCCCCGTTCTCAGTTGGGCGAG
CCCTTCCAGCTGTATTATGGCGATAAGCAGGAATCTCATTCGGCCCTCACCTTGTTGAGATCAGCCAAAAGTAAA
GGACTCAATACGCTACCGAATATCTTGTTCGGTGAAAGCGAGTGGGATCCTCCGATTGTCGAGGAAATCAGGAAG
AAATTTCGGCATGAACTCGAGACTTTCCTTCAGCGACCCATCAACCATTTGATCGCCAAAAGGCATAATCATATC
AGTATATTCGCTGCTCTTTCGACTGGGCAAGGAGAGGAATGGGCTTTGGAGGTGATGGATTGGATACGGTCTCTT
GCATAA
Gene >AgabiH97|023720
ATGTTTTTATTTCCTTTTATTCTCGTATTTACCGTTGTTTACTCTTTGTCTGTACTCTCGTATATAAGTGACCTT
GTCGTAGATAGAACGAGGCGACAAGTGCCTCGAGTAGTTTGTCTAGTTCAATCTCTACTCGCTACTTAACTGAAG
ATTTTCAACGGTAACTTCAACGTTACGACAACACTACTTCCGACTCTTTCAGGCTTTGAGCAAGTACAAGTTAGT
ACATTTTCATTCCTCCGGCTTCATCACCCACTGAATCTAGCCCAACCACGCTCTGCAACCAAAGAGAAGTCATGG
ACGCCGTATCGAGGTTGAAAGATGAAGGGAAAATAGAGATTTTTGATGTTCTTGGTCCCAGTACGTTCTAGCTGC
TTGTTTAATGAACCACTGGACTCATTGAATCTCAGCTGTTATGGCTTTTAATGAAGCCATGAACAATGATTTGTC
TGCTATTACTGGCGTGCAGAGGTCTACATTCAAGTACGGAACCGAAGAACGCCACCAAGTACGTCACCCTCGAAA
GGCCTATCAATTTAATTCACAACTTTGATGCAGCTCGATATATACTATCCTCCGACAATACAATCGTCGAAAACA
CCTGTCCTCTTCTGGATTTATGGAGGCGGTTTTGTAGCAGGAGATCGCGTCCTTCCTCTTCCCTCACTGAGCTAT
CCTAATGTCGGCGCATTCTTTGCTCGGCAAGGCGCTATCATGGTTGTTCCCGACTATCGCCTTGCGTCCCCTCCT
ATGTCTGCTCAATACCCTAAACCGGTTGAAGACATACGAGACGCCGTTCAGTGGATAACCGCAAATCGAGATAAA
CTTATGAGTCAAACCACGCCGAACCCCGACACAGATAACATCTTCATGCTTGGTCATTCAGCTGGAGCAGTTCAC
CTTGCCACGTTATTGCTGGAACCCGAAGTTCTTGCCGTGCATTCTCCTCTCCGATCCAAAATTAGAGGTGCCGTT
CTCCTGGCAGGGTATTATTACTATGATCCCCGTTCTCAGTTGGGCGAGCCCTTCCAGCTGTATTATGGCGATAAG
CAGGAATCTCATTCGGCCCTCACCTTGTTGAGATCAGCCAAAAGTAAAGGACTCAATACGCTACCGAATATCTTG
TTCGGTGAAAGCGAGTGGGATCCTCCGATTGTCGAGGAAATCAGGAAGAAATTTCGGCATGAACTCGAGACTTTC
CTTCAGCGACCCATCAACCATTTGATCGCCAAAAGGCATAATCATATCAGTATATTCGCTGCTCTTTCGACTGGG
CAAGGAGAGGAATGGGCTTTGGAGGTGATGGATTGGATACGGTCTCTTGCATAA

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