Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|023350
Gene name
Locationscaffold_11:502658..503967
Strand+
Gene length (bp)1309
Transcript length (bp)804
Coding sequence length (bp)804
Protein length (aa) 268

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03211 Pectate_lyase Pectate lyase 5.3E-80 38 240

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|Q5B024|PLYF_EMENI Probable pectate lyase F OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=plyF PE=3 SV=2 1 249 2.0E-68
sp|Q0CCF8|PLYF_ASPTN Probable pectate lyase F OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=plyF PE=3 SV=1 59 249 3.0E-67
sp|A1D5E3|PLYF_NEOFI Probable pectate lyase F OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=plyF PE=3 SV=1 24 249 2.0E-66
sp|A1C4B8|PLYE_ASPCL Probable pectate lyase E OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=plyE PE=3 SV=1 22 261 2.0E-66
sp|B0Y953|PLYF_ASPFC Probable pectate lyase F OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=plyF PE=3 SV=1 24 249 8.0E-66
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Swissprot ID Swissprot Description Start End E-value
sp|Q5B024|PLYF_EMENI Probable pectate lyase F OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=plyF PE=3 SV=2 1 249 2.0E-68
sp|Q0CCF8|PLYF_ASPTN Probable pectate lyase F OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=plyF PE=3 SV=1 59 249 3.0E-67
sp|A1D5E3|PLYF_NEOFI Probable pectate lyase F OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=plyF PE=3 SV=1 24 249 2.0E-66
sp|A1C4B8|PLYE_ASPCL Probable pectate lyase E OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=plyE PE=3 SV=1 22 261 2.0E-66
sp|B0Y953|PLYF_ASPFC Probable pectate lyase F OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=plyF PE=3 SV=1 24 249 8.0E-66
sp|Q0CJ49|PLYD_ASPTN Probable pectate lyase D OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=plyD PE=3 SV=1 36 261 3.0E-64
sp|Q4WKV8|PLYF_ASPFU Probable pectate lyase F OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=plyF PE=3 SV=1 24 249 5.0E-64
sp|A1DBJ7|PLYE_NEOFI Probable pectate lyase E OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=plyE PE=3 SV=1 40 261 5.0E-63
sp|B8NJZ7|PLYF_ASPFN Probable pectate lyase F OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=plyF PE=3 SV=2 3 249 9.0E-63
sp|Q5B7Z3|PLYE_EMENI Pectate lyase E OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=plyE PE=1 SV=1 40 261 1.0E-62
sp|Q4WC29|PLYE_ASPFU Probable pectate lyase E OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=plyE PE=3 SV=1 40 267 2.0E-62
sp|B0Y9M8|PLYE_ASPFC Probable pectate lyase E OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=plyE PE=3 SV=1 40 267 2.0E-62
sp|Q5ATC7|PLYH_EMENI Pectate lyase H OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=plyH PE=1 SV=1 7 248 8.0E-62
sp|Q5BA88|PLYD_EMENI Probable pectate lyase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=plyD PE=3 SV=1 1 267 1.0E-61
sp|A1DCY5|PLYD_NEOFI Probable pectate lyase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=plyD PE=3 SV=1 28 261 4.0E-55
sp|Q2TW49|PLYE_ASPOR Probable pectate lyase E OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=plyE PE=3 SV=1 34 267 6.0E-55
sp|B8NX10|PLYE_ASPFN Probable pectate lyase E OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=plyE PE=3 SV=1 34 267 6.0E-55
sp|Q5AY82|PLYG_EMENI Probable pectate lyase G OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=plyG PE=3 SV=1 30 261 1.0E-53
sp|Q4WGV9|PLYD_ASPFU Probable pectate lyase D OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=plyD PE=3 SV=1 40 261 2.0E-53
sp|B0YB89|PLYD_ASPFC Probable pectate lyase D OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=plyD PE=3 SV=1 40 261 2.0E-53
sp|Q0CJ20|PLYG_ASPTN Probable pectate lyase G OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=plyG PE=3 SV=1 28 251 4.0E-48
sp|Q9X6Z2|PLYA_PAEBA Pectate lyase A OS=Paenibacillus barcinonensis GN=pelA PE=1 SV=1 1 182 3.0E-26
sp|Q65EF5|PLYC_BACLD Pectate lyase C OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCIMB 9375 / NRRL NRS-1264 / Gibson 46) GN=pelC PE=3 SV=2 87 182 1.0E-16
sp|O34310|PLYC_BACSU Pectate lyase C OS=Bacillus subtilis (strain 168) GN=pelC PE=1 SV=1 85 182 2.0E-16
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GO

GO Term Description Terminal node
GO:0005576 extracellular region Yes
GO:0030570 pectate lyase activity Yes
GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides No
GO:0005575 cellular_component No
GO:0003674 molecular_function No
GO:0016829 lyase activity No
GO:0016835 carbon-oxygen lyase activity No
GO:0003824 catalytic activity No
GO:0110165 cellular anatomical entity No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
Yes 1 - 20 0.45

Transmembrane Domains

Domain # Start End Length
1 7 29 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|023350
MLKIALLALSLVAAQSVIAVVPTAVPTVAPRAPAAFTTRLPASSGSVSLPTASVISGSFDGRMVKYDRRGSSGAC
QEQDETGEADAVFILQSGASISNVIIGKDQAEGIHCRGPCTVTNVWWEDVCEDAITLKQTGSGDVSIINGGGAFH
AEDKIVQHNGRGTVRISNFFASDFGKLYRSCGNCDQSNERHVQVTNVCLHDGSEGVGINSNFGDTATLSGISTDS
HPSDSSVCCTYEGVSPGNEPDKIGCGDGFSACNYNQDSIGSC*
Coding >AgabiH97|023350
ATGCTCAAAATAGCGCTTCTTGCTTTATCCTTGGTCGCTGCACAATCAGTCATCGCTGTGGTCCCCACCGCGGTG
CCCACTGTGGCCCCAAGAGCCCCAGCTGCCTTCACAACCAGGCTTCCTGCTTCATCTGGTTCTGTTTCGCTCCCT
ACTGCTAGCGTGATCTCTGGCTCTTTCGACGGTCGCATGGTCAAATATGACCGTCGAGGTAGCAGTGGCGCATGT
CAAGAGCAAGATGAGACTGGTGAAGCGGATGCAGTCTTCATATTGCAGTCGGGAGCGTCCATTTCTAATGTTATC
ATCGGTAAAGATCAAGCTGAGGGTATCCATTGCCGTGGCCCTTGCACTGTTACCAACGTTTGGTGGGAGGATGTC
TGCGAAGACGCCATTACTCTTAAGCAAACCGGCTCTGGCGATGTCTCTATAATCAATGGTGGAGGTGCTTTCCAT
GCCGAGGATAAGATAGTTCAACACAACGGCCGAGGTACCGTCAGAATCAGTAACTTCTTCGCTTCCGACTTCGGC
AAACTCTACCGTTCTTGCGGAAATTGTGACCAATCTAACGAACGTCATGTCCAAGTTACCAATGTTTGCTTACAC
GACGGTAGCGAAGGTGTTGGTATCAACTCTAATTTCGGTGACACTGCGACACTTTCAGGTATCAGCACCGATAGT
CACCCTAGTGATTCCAGCGTTTGTTGTACCTATGAGGGTGTTTCACCTGGGAATGAACCTGACAAGATCGGATGT
GGCGACGGCTTTAGCGCTTGCAACTACAATCAAGATTCTATTGGATCTTGCTAA
Transcript >AgabiH97|023350
ATGCTCAAAATAGCGCTTCTTGCTTTATCCTTGGTCGCTGCACAATCAGTCATCGCTGTGGTCCCCACCGCGGTG
CCCACTGTGGCCCCAAGAGCCCCAGCTGCCTTCACAACCAGGCTTCCTGCTTCATCTGGTTCTGTTTCGCTCCCT
ACTGCTAGCGTGATCTCTGGCTCTTTCGACGGTCGCATGGTCAAATATGACCGTCGAGGTAGCAGTGGCGCATGT
CAAGAGCAAGATGAGACTGGTGAAGCGGATGCAGTCTTCATATTGCAGTCGGGAGCGTCCATTTCTAATGTTATC
ATCGGTAAAGATCAAGCTGAGGGTATCCATTGCCGTGGCCCTTGCACTGTTACCAACGTTTGGTGGGAGGATGTC
TGCGAAGACGCCATTACTCTTAAGCAAACCGGCTCTGGCGATGTCTCTATAATCAATGGTGGAGGTGCTTTCCAT
GCCGAGGATAAGATAGTTCAACACAACGGCCGAGGTACCGTCAGAATCAGTAACTTCTTCGCTTCCGACTTCGGC
AAACTCTACCGTTCTTGCGGAAATTGTGACCAATCTAACGAACGTCATGTCCAAGTTACCAATGTTTGCTTACAC
GACGGTAGCGAAGGTGTTGGTATCAACTCTAATTTCGGTGACACTGCGACACTTTCAGGTATCAGCACCGATAGT
CACCCTAGTGATTCCAGCGTTTGTTGTACCTATGAGGGTGTTTCACCTGGGAATGAACCTGACAAGATCGGATGT
GGCGACGGCTTTAGCGCTTGCAACTACAATCAAGATTCTATTGGATCTTGCTAA
Gene >AgabiH97|023350
ATGCTCAAAATAGCGCTTCTTGCTTTATCCTTGGTCGCTGCACAATCAGTCATCGCTGTGGTCCCCACCGCGGTG
CCCACTGTGGCCCCAAGAGCCCCAGCTGCCTTCACAACCAGGCTTCCTGCTTCATCTGTAGGTCACCTGCAGTTA
AGGGGTTGTGGAATGCCAACTGAAATTACATAACAGGGTTCTGTTTCGCTCCCTACTGCTAGCGTGATCTCTGGC
TCTTTCGACGGTCGCATGGTCAAATATGACCGTCGAGGTAGCAGTAAGTCCTTCCGGACTCTGTTTGAGATTCAA
AAGGTCAATTTCATATTCAATTACACTAGGTGGCGCATGTCAAGAGCAAGATGAGACTGGTGAAGCGGATGCAGT
CTTCATATTGCAGTCGGGAGCGTCCATTTCTAATGTTATCATCGGTAAAGATCAAGCTGAGGGTAAGCTACCGTC
AATTGGTTTGGAGAAACCTTTGAATTGACTGTTCAGGTATCCATTGCCGTGGCCCTTGCACTGTTACCAACGTTT
GGTGGGAGGATGTCTGCGAAGGTAAATTCCACCGCCTTGTGTATTTGCAGTCGTGATTAACACGTTATTCTATAG
ACGCCATTACTGTAAGATCATTTATTGGTGGTGGACATTTATCTTCGTCGTCTCAATATTTTTTGAGTAGCTTAA
GCAAACCGGCTCTGGCGATGTCTCTATAATCAATGGTGGAGGTGCTTTCCATGCCGAGGATAAGATAGGTGAAGA
GTCTAATCCAATATGCGTTATGGTCAGAAATTAAACTTGTTTCTAGTTCAACACAACGGCCGAGGTACCGTCAGA
ATCAGTAACTTCTTCGCTTCCGACTTCGGTTAGTTACATCACTTTTCATTTTCATTGCCTGCTTCAATATTACTC
CAACAGGCAAACTCTACCGTTCTTGCGGAAATTGTGACCAATCTAACGAACGTCATGTCCAAGTTACCAATGTAA
ATTCAGTCTCTATGCAGCTTGTAGTAACAATCCTGACTTATGATAATCACCCGCAGGTTTGCTTACACGACGGTA
GCGAAGGTGTTGGTATCAACTCTAATTTCGGTGACACTGCGACACTTTCAGGTATCAGCACCGATAGTCACCCTA
GTGATTCCAGCGTTTGTTGTACCTATGAGGGTGTTTCACCTGGGAATGAACCTGACAAGATCGGATGGTACGACC
TTATTTGCTCATGTGGATATTTGACCTGTATTGACGGTTATTCGTGATTTGCAGTGGCGACGGCTTTAGCGCTTG
CAACTACAATCAAGATTCTATTGGATCTTGCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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