Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|023220
Gene name
Locationscaffold_11:461072..462607
Strand-
Gene length (bp)1535
Transcript length (bp)1425
Coding sequence length (bp)1425
Protein length (aa) 475

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF07690 MFS_1 Major Facilitator Superfamily 9.1E-20 33 430

Swissprot hits

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Swissprot ID Swissprot Description Start End E-value
sp|O74902|YCS2_SCHPO Uncharacterized MFS-type transporter C613.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC613.02 PE=3 SV=1 6 474 1.0E-68
sp|O74901|YCS1_SCHPO Uncharacterized protein CC613.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC613.01 PE=1 SV=1 15 474 4.0E-68
sp|Q12519|YJ87_SCHPO Uncharacterized MFS-type transporter C330.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC330.07c PE=1 SV=1 16 472 1.0E-64
sp|O74921|YJ7B_SCHPO Uncharacterized MFS-type transporter C757.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC757.11c PE=3 SV=1 15 472 6.0E-55
sp|Q9T050|SPXM2_ARATH SPX domain-containing membrane protein At4g11810 OS=Arabidopsis thaliana GN=At4g11810 PE=3 SV=1 6 227 3.0E-18
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Swissprot ID Swissprot Description Start End E-value
sp|O74902|YCS2_SCHPO Uncharacterized MFS-type transporter C613.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC613.02 PE=3 SV=1 6 474 1.0E-68
sp|O74901|YCS1_SCHPO Uncharacterized protein CC613.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC613.01 PE=1 SV=1 15 474 4.0E-68
sp|Q12519|YJ87_SCHPO Uncharacterized MFS-type transporter C330.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC330.07c PE=1 SV=1 16 472 1.0E-64
sp|O74921|YJ7B_SCHPO Uncharacterized MFS-type transporter C757.11c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC757.11c PE=3 SV=1 15 472 6.0E-55
sp|Q9T050|SPXM2_ARATH SPX domain-containing membrane protein At4g11810 OS=Arabidopsis thaliana GN=At4g11810 PE=3 SV=1 6 227 3.0E-18
sp|Q0JAW2|SPXM2_ORYSJ SPX domain-containing membrane protein Os04g0573000 OS=Oryza sativa subsp. japonica GN=Os04g0573000 PE=2 SV=2 28 356 2.0E-17
sp|B8AT51|SPXM2_ORYSI SPX domain-containing membrane protein OsI_17046 OS=Oryza sativa subsp. indica GN=OsI_17046 PE=3 SV=1 28 356 2.0E-17
sp|Q6EPQ3|SPXM1_ORYSJ SPX domain-containing membrane protein Os02g45520 OS=Oryza sativa subsp. japonica GN=Os02g0678200 PE=2 SV=1 38 356 5.0E-17
sp|A2X8A7|SPXM1_ORYSI SPX domain-containing membrane protein OsI_08463 OS=Oryza sativa subsp. indica GN=OsI_08463 PE=3 SV=2 38 356 5.0E-17
sp|Q2V4F9|SPXM1_ARATH SPX domain-containing membrane protein At1g63010 OS=Arabidopsis thaliana GN=At1g63010 PE=2 SV=1 8 207 5.0E-17
sp|Q658H5|SPXM3_ORYSJ SPX domain-containing membrane protein Os06g0129400 OS=Oryza sativa subsp. japonica GN=Os06g0129400 PE=2 SV=1 12 206 2.0E-16
sp|A2Y8U6|SPXM3_ORYSI SPX domain-containing membrane protein OsI_21475 OS=Oryza sativa subsp. indica GN=OsI_21475 PE=3 SV=1 12 206 2.0E-16
sp|Q93ZQ5|SPXM3_ARATH SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana GN=At4g22990 PE=2 SV=2 28 356 7.0E-16
sp|B8BDK8|SPXM4_ORYSI SPX domain-containing membrane protein OsI_32082 OS=Oryza sativa subsp. indica GN=OsI_32082 PE=3 SV=2 12 206 9.0E-09
sp|B9FMX4|SPXM4_ORYSJ SPX domain-containing membrane protein Os09g0521800 OS=Oryza sativa subsp. japonica GN=Os09g0521800 PE=3 SV=2 12 206 3.0E-08
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GO

GO Term Description Terminal node
GO:0055085 transmembrane transport Yes
GO:0022857 transmembrane transporter activity Yes
GO:0051179 localization No
GO:0003674 molecular_function No
GO:0051234 establishment of localization No
GO:0008150 biological_process No
GO:0009987 cellular process No
GO:0005215 transporter activity No
GO:0006810 transport No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 45 0.5

Transmembrane Domains

Domain # Start End Length
1 29 48 19
2 63 85 22
3 92 109 17
4 114 136 22
5 156 178 22
6 191 213 22
7 283 303 20
8 323 345 22
9 352 374 22
10 384 406 22
11 415 437 22
12 447 469 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|023220
MQPPADDDDRLSATSIDPEELRIPKKSSLSIIVICNCLLQVSFFIIVSSSNDYANRLGGDSTFSGIVIGIPTAIS
ALALIPIIRYDKGGYTLPLNISCASMILGHILYACAYQTSWLYLILIGRIINGFGFTMWMYCKRYCSDARIVGIR
RRTTLASFLVVGQGLGMSLGPFAGGLLYKVGFRNTVFNGFTSPSWVMAAVWCCFWVCTRLFFVDVPKDARYTSQP
PSQPLTESTPTTNTPSPDDDKEKTSDPTTKDTIPTYPPPPPPTTNTPTPKYKMSLTQIGVLSCMCWFAMTCFFIL
GAWEANLPVFGSSTPQFHWSPTASGNFIALGGISCFPFLILNIFLTRRISDRLTLLFGASLGLSASLVFLSLLRT
SKLNYGSIFICWWGVALGFNIASTTPVSLLSKQLPPEWNGWVSLAIQYSMYTGRVTGAIWGGSGVKVGMMNYIGL
QIGLVGLGLVMLMILWDGLKAKRG*
Coding >AgabiH97|023220
ATGCAACCACCAGCAGACGACGATGATAGACTCAGTGCCACCTCGATAGACCCAGAGGAACTCCGGATTCCTAAG
AAATCATCCCTCAGCATCATAGTCATCTGCAACTGTCTTCTTCAAGTTTCTTTCTTCATCATTGTCTCGTCGTCC
AATGACTATGCAAACCGCCTCGGTGGAGACTCGACCTTTTCTGGTATCGTCATCGGTATTCCAACTGCAATCTCA
GCACTCGCATTGATTCCCATCATACGATATGACAAAGGTGGTTATACCCTACCTCTCAACATCAGCTGCGCATCT
ATGATCCTCGGACATATCCTCTACGCCTGCGCCTACCAAACCTCTTGGCTCTACCTCATCCTCATCGGTCGCATC
ATCAACGGTTTCGGTTTCACTATGTGGATGTACTGCAAACGCTATTGTTCCGACGCCCGTATAGTCGGTATCCGT
CGCAGAACCACTCTCGCGAGTTTCCTTGTCGTAGGTCAAGGACTCGGTATGAGTCTAGGTCCCTTTGCCGGAGGT
TTGTTGTATAAGGTTGGGTTTAGGAATACTGTTTTTAATGGATTTACGAGTCCGAGTTGGGTTATGGCTGCGGTA
TGGTGTTGTTTTTGGGTGTGCACCCGATTGTTTTTCGTCGACGTACCCAAAGACGCTAGATACACCTCCCAACCA
CCATCCCAACCACTCACCGAATCCACTCCAACCACCAACACTCCTTCACCCGACGACGACAAAGAAAAAACCTCC
GACCCAACCACCAAAGACACCATCCCCACCTATCCTCCCCCTCCCCCTCCCACCACCAACACCCCCACCCCCAAA
TACAAAATGTCCCTAACCCAAATCGGCGTCCTATCCTGCATGTGCTGGTTCGCCATGACCTGTTTCTTCATCCTC
GGCGCCTGGGAAGCCAACCTCCCCGTCTTCGGTTCCTCCACCCCCCAATTCCACTGGTCCCCAACCGCCTCAGGT
AATTTCATAGCCCTAGGCGGTATATCCTGTTTCCCCTTCCTCATCCTCAACATCTTCCTCACCCGTCGAATCTCC
GACCGTCTCACCCTCCTATTCGGTGCCTCTCTCGGTCTCTCAGCCTCACTCGTCTTCCTCTCTCTCCTTCGTACT
TCCAAACTCAATTACGGTAGCATCTTTATATGTTGGTGGGGTGTAGCTTTGGGTTTTAACATCGCTAGTACCACA
CCTGTGAGTCTATTAAGTAAACAATTACCACCAGAATGGAATGGGTGGGTATCTTTGGCGATTCAGTATAGCATG
TACACGGGTCGTGTGACGGGTGCCATTTGGGGTGGGAGTGGTGTCAAAGTCGGGATGATGAATTATATTGGGTTG
CAGATTGGGTTGGTTGGACTTGGATTGGTTATGTTGATGATATTGTGGGATGGGTTGAAAGCGAAACGAGGGTAG
Transcript >AgabiH97|023220
ATGCAACCACCAGCAGACGACGATGATAGACTCAGTGCCACCTCGATAGACCCAGAGGAACTCCGGATTCCTAAG
AAATCATCCCTCAGCATCATAGTCATCTGCAACTGTCTTCTTCAAGTTTCTTTCTTCATCATTGTCTCGTCGTCC
AATGACTATGCAAACCGCCTCGGTGGAGACTCGACCTTTTCTGGTATCGTCATCGGTATTCCAACTGCAATCTCA
GCACTCGCATTGATTCCCATCATACGATATGACAAAGGTGGTTATACCCTACCTCTCAACATCAGCTGCGCATCT
ATGATCCTCGGACATATCCTCTACGCCTGCGCCTACCAAACCTCTTGGCTCTACCTCATCCTCATCGGTCGCATC
ATCAACGGTTTCGGTTTCACTATGTGGATGTACTGCAAACGCTATTGTTCCGACGCCCGTATAGTCGGTATCCGT
CGCAGAACCACTCTCGCGAGTTTCCTTGTCGTAGGTCAAGGACTCGGTATGAGTCTAGGTCCCTTTGCCGGAGGT
TTGTTGTATAAGGTTGGGTTTAGGAATACTGTTTTTAATGGATTTACGAGTCCGAGTTGGGTTATGGCTGCGGTA
TGGTGTTGTTTTTGGGTGTGCACCCGATTGTTTTTCGTCGACGTACCCAAAGACGCTAGATACACCTCCCAACCA
CCATCCCAACCACTCACCGAATCCACTCCAACCACCAACACTCCTTCACCCGACGACGACAAAGAAAAAACCTCC
GACCCAACCACCAAAGACACCATCCCCACCTATCCTCCCCCTCCCCCTCCCACCACCAACACCCCCACCCCCAAA
TACAAAATGTCCCTAACCCAAATCGGCGTCCTATCCTGCATGTGCTGGTTCGCCATGACCTGTTTCTTCATCCTC
GGCGCCTGGGAAGCCAACCTCCCCGTCTTCGGTTCCTCCACCCCCCAATTCCACTGGTCCCCAACCGCCTCAGGT
AATTTCATAGCCCTAGGCGGTATATCCTGTTTCCCCTTCCTCATCCTCAACATCTTCCTCACCCGTCGAATCTCC
GACCGTCTCACCCTCCTATTCGGTGCCTCTCTCGGTCTCTCAGCCTCACTCGTCTTCCTCTCTCTCCTTCGTACT
TCCAAACTCAATTACGGTAGCATCTTTATATGTTGGTGGGGTGTAGCTTTGGGTTTTAACATCGCTAGTACCACA
CCTGTGAGTCTATTAAGTAAACAATTACCACCAGAATGGAATGGGTGGGTATCTTTGGCGATTCAGTATAGCATG
TACACGGGTCGTGTGACGGGTGCCATTTGGGGTGGGAGTGGTGTCAAAGTCGGGATGATGAATTATATTGGGTTG
CAGATTGGGTTGGTTGGACTTGGATTGGTTATGTTGATGATATTGTGGGATGGGTTGAAAGCGAAACGAGGGTAG
Gene >AgabiH97|023220
ATGCAACCACCAGCAGACGACGATGATAGACTCAGTGCCACCTCGATAGACCCAGAGGAACTCCGGATTCCTAAG
AAATCATCCCTCAGCATCATAGTCATCTGCAACTGTCTTCTTCAAGTTGGCTTTTCCCAAAAATAGCAAATCCAA
TATCTGACATCGATCTTTTTCTATTTAGGTTTCTTTCTTCATCATTGTCTCGTCGTCCAATGACTATGCAAACCG
CCTCGGTGGAGACTCGACCTTTTCTGGTATCGTCATCGGTATTCCAACTGCAATCTCAGCACTCGCATTGATTCC
CATCATACGATATGACAAAGGTAAAATAAAAATATCGCTTCTCCAAGTACTAGTATAACTCAATACTCGCAGGTG
GTTATACCCTACCTCTCAACATCAGCTGCGCATCTATGATCCTCGGACATATCCTCTACGCCTGCGCCTACCAAA
CCTCTTGGCTCTACCTCATCCTCATCGGTCGCATCATCAACGGTTTCGGTTTCACTATGTGGATGTACTGCAAAC
GCTATTGTTCCGACGCCCGTATAGTCGGTATCCGTCGCAGAACCACTCTCGCGAGTTTCCTTGTCGTAGGTCAAG
GACTCGGTATGAGTCTAGGTCCCTTTGCCGGAGGTTTGTTGTATAAGGTTGGGTTTAGGAATACTGTTTTTAATG
GATTTACGAGTCCGAGTTGGGTTATGGCTGCGGTATGGTGTTGTTTTTGGGTGTGCACCCGATTGTTTTTCGTCG
ACGTACCCAAAGACGCTAGATACACCTCCCAACCACCATCCCAACCACTCACCGAATCCACTCCAACCACCAACA
CTCCTTCACCCGACGACGACAAAGAAAAAACCTCCGACCCAACCACCAAAGACACCATCCCCACCTATCCTCCCC
CTCCCCCTCCCACCACCAACACCCCCACCCCCAAATACAAAATGTCCCTAACCCAAATCGGCGTCCTATCCTGCA
TGTGCTGGTTCGCCATGACCTGTTTCTTCATCCTCGGCGCCTGGGAAGCCAACCTCCCCGTCTTCGGTTCCTCCA
CCCCCCAATTCCACTGGTCCCCAACCGCCTCAGGTAATTTCATAGCCCTAGGCGGTATATCCTGTTTCCCCTTCC
TCATCCTCAACATCTTCCTCACCCGTCGAATCTCCGACCGTCTCACCCTCCTATTCGGTGCCTCTCTCGGTCTCT
CAGCCTCACTCGTCTTCCTCTCTCTCCTTCGTACTTCCAAACTCAATTACGGTAGCATCTTTATATGTTGGTGGG
GTGTAGCTTTGGGTTTTAACATCGCTAGTACCACACCTGTGAGTCTATTAAGTAAACAATTACCACCAGAATGGA
ATGGGTGGGTATCTTTGGCGATTCAGTATAGCATGTACACGGGTCGTGTGACGGGTGCCATTTGGGGTGGGAGTG
GTGTCAAAGTCGGGATGATGAATTATATTGGGTTGCAGATTGGGTTGGTTGGACTTGGATTGGTTATGTTGATGA
TATTGTGGGATGGGTTGAAAGCGAAACGAGGGTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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