Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|022620
Gene name
Locationscaffold_11:297775..299070
Strand+
Gene length (bp)1295
Transcript length (bp)1083
Coding sequence length (bp)1083
Protein length (aa) 361

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00646 F-box F-box domain 7.2E-06 2 28

Swissprot hits

(None)

GO

GO Term Description Terminal node
GO:0005515 protein binding Yes
GO:0005488 binding No
GO:0003674 molecular_function No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cytoplasm 0.6552 0.3988 0.0619 0.0792 0.1458 0.0143 0.1318 0.2924 0.2289 0.0085

SignalP

(None)

Transmembrane Domains

(None)

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup1119
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|022780
Agaricus bisporus var bisporus H39 AgabiH39|022890
Agaricus bisporus var bisporus H39 AgabiH39|022920
Agaricus bisporus var bisporus H39 AgabiH39|492900
Agaricus bisporus var bisporus H39 AgabiH39|493200
Agaricus bisporus var bisporus H39 AgabiH39|493500
Agaricus bisporus var bisporus H39 AgabiH39|493600
Agaricus bisporus var bisporus H97 AgabiH97|022890
Agaricus bisporus var bisporus H97 AgabiH97|022820
Agaricus bisporus var bisporus H97 AgabiH97|022810
Agaricus bisporus var bisporus H97 AgabiH97|022780
Agaricus bisporus var bisporus H97 AgabiH97|022620 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|022750
Agaricus bisporus var bisporus H97 AgabiH97|022640
Agaricus bisporus var bisporus H97 AgabiH97|022910
Agaricus bisporus var bisporus H97 AgabiH97|022610
Agaricus bisporus var bisporus H97 AgabiH97|022760
Agaricus bisporus var bisporus H97 AgabiH97|022920

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|022620
MLSDLPPEIVSEIVSHLPYKDILVLRQVFICGDFRHATKAHAVWLNLAKQYLAENTHSHFSSIQTLSSLTTDQLR
ERFERRLMGLKGLSSPIPTTCIAPGGRWLFAGTNKCSLYYWDLDSDNPEPVLLVPCDGIANIPGRNNTVAEIDFL
VEHDDPLSGFIVAFIGMDGNIGKKSSEWLHIWDVIPQDDGVLIAKRLKSLPMPYYGFYPKFSFNDHLVACTMNER
VDVYWWRECTDTRLVRCTLGFKRSILVSNLYVVGSDKLLVFTSFADKYKARLYALESGYSEVEELAKVVSHATKI
WSFRFSSEYHSRGISRLYFDGANYQQIIVMHGGICNLTMPALQADKATLTKVADFDLHQE*
Coding >AgabiH97|022620
ATGCTGAGCGACCTACCTCCCGAAATTGTTTCGGAAATTGTTTCGCATCTTCCGTATAAAGACATTCTTGTCCTT
CGCCAGGTCTTCATATGCGGGGACTTCCGCCACGCCACCAAGGCCCATGCTGTATGGCTCAACCTCGCAAAGCAA
TATCTAGCAGAAAACACTCATAGCCATTTTTCAAGTATACAAACTCTATCCTCTCTCACCACCGACCAGCTCCGT
GAACGGTTCGAAAGACGACTTATGGGCCTAAAAGGGCTTTCCTCCCCGATTCCAACTACATGCATTGCTCCGGGT
GGACGATGGTTGTTTGCTGGTACCAACAAATGCTCGTTATATTACTGGGATCTCGATTCCGACAACCCGGAGCCT
GTACTCCTGGTACCCTGTGATGGCATTGCCAATATTCCCGGGAGGAACAATACAGTCGCTGAAATAGACTTTCTC
GTTGAGCACGATGACCCCTTATCCGGGTTCATTGTTGCGTTCATTGGGATGGATGGTAACATTGGTAAGAAGTCA
TCAGAATGGCTTCATATTTGGGACGTCATACCACAAGATGATGGTGTTCTCATAGCCAAACGTTTAAAGAGTCTA
CCAATGCCGTACTATGGGTTTTATCCCAAATTTTCATTTAATGACCACCTTGTTGCATGTACCATGAACGAGAGG
GTGGATGTATACTGGTGGAGGGAGTGCACAGATACACGCTTAGTTAGGTGTACATTGGGATTTAAAAGGAGTATC
CTTGTGTCTAATTTATATGTTGTCGGCAGCGACAAACTTCTTGTCTTCACAAGTTTTGCGGACAAATATAAAGCA
CGCTTGTACGCCCTGGAATCAGGATATTCTGAAGTCGAAGAACTTGCGAAGGTAGTATCGCATGCGACAAAAATC
TGGTCATTTCGTTTCAGTTCCGAGTACCACAGTCGTGGGATATCACGATTATATTTCGATGGAGCAAACTATCAA
CAGATCATTGTTATGCATGGTGGCATCTGTAATCTCACTATGCCAGCATTGCAAGCCGACAAAGCGACTTTAACA
AAGGTTGCAGATTTTGACCTTCATCAAGAATGA
Transcript >AgabiH97|022620
ATGCTGAGCGACCTACCTCCCGAAATTGTTTCGGAAATTGTTTCGCATCTTCCGTATAAAGACATTCTTGTCCTT
CGCCAGGTCTTCATATGCGGGGACTTCCGCCACGCCACCAAGGCCCATGCTGTATGGCTCAACCTCGCAAAGCAA
TATCTAGCAGAAAACACTCATAGCCATTTTTCAAGTATACAAACTCTATCCTCTCTCACCACCGACCAGCTCCGT
GAACGGTTCGAAAGACGACTTATGGGCCTAAAAGGGCTTTCCTCCCCGATTCCAACTACATGCATTGCTCCGGGT
GGACGATGGTTGTTTGCTGGTACCAACAAATGCTCGTTATATTACTGGGATCTCGATTCCGACAACCCGGAGCCT
GTACTCCTGGTACCCTGTGATGGCATTGCCAATATTCCCGGGAGGAACAATACAGTCGCTGAAATAGACTTTCTC
GTTGAGCACGATGACCCCTTATCCGGGTTCATTGTTGCGTTCATTGGGATGGATGGTAACATTGGTAAGAAGTCA
TCAGAATGGCTTCATATTTGGGACGTCATACCACAAGATGATGGTGTTCTCATAGCCAAACGTTTAAAGAGTCTA
CCAATGCCGTACTATGGGTTTTATCCCAAATTTTCATTTAATGACCACCTTGTTGCATGTACCATGAACGAGAGG
GTGGATGTATACTGGTGGAGGGAGTGCACAGATACACGCTTAGTTAGGTGTACATTGGGATTTAAAAGGAGTATC
CTTGTGTCTAATTTATATGTTGTCGGCAGCGACAAACTTCTTGTCTTCACAAGTTTTGCGGACAAATATAAAGCA
CGCTTGTACGCCCTGGAATCAGGATATTCTGAAGTCGAAGAACTTGCGAAGGTAGTATCGCATGCGACAAAAATC
TGGTCATTTCGTTTCAGTTCCGAGTACCACAGTCGTGGGATATCACGATTATATTTCGATGGAGCAAACTATCAA
CAGATCATTGTTATGCATGGTGGCATCTGTAATCTCACTATGCCAGCATTGCAAGCCGACAAAGCGACTTTAACA
AAGGTTGCAGATTTTGACCTTCATCAAGAATGA
Gene >AgabiH97|022620
ATGCTGAGCGACCTACCTCCCGAAATTGTTTCGGAAATTGTTTCGCATCTTCCGTATAAAGACATTCTTGTCCTT
CGCCAGGTGACTTGTTTCATCCTTTCTTCCTACTCGATCCGAGGCAGCATTAAAACATTTATCCAGGTCTTCATA
TGCGGGGACTTCCGCCACGCCACCAAGGCCCATGCTGTATGGCTCAACCTCGCAAAGCAATATCTAGCAGAAAAC
ACTCATAGCCATTTTTCAAGTATACAAACTCTATCCTCTCTCACCACCGACCAGCTCCGTGAACGGTTCGAAAGA
CGACTTATGGTAAATGACCTCTGGCAACTATCAAAAGAAATTTATCCTTCTGTAAAGGGCCTAAAAGGGCTTTCC
TCCCCGATTCCAACTACATGCATTGCTCCGGGTGGACGATGGTTGTTTGCTGGTACCAACAAATGCTCGTTATAT
TACTGGGATCTCGATTCCGACAACCCGGAGCCTGTACTCCTGGTACCCTGTGATGGCATTGCCAATATTCCCGGG
AGGAACAATACAGTCGCTGAAATAGACTTTCTCGTTGAGCACGATGACCCCTTATCCGGGTTCATTGTTGCGTTC
ATTGGGATGGATGGTAAGTCTCTGATTACATCGTATATGGAAAGAACTGATAGACGGCAATTTCAGGTAACATTG
GTAAGAAGTCATCAGAATGGCTTCATATTTGGGACGTCATACCACAAGATGATGGTGTTCTCATAGCCAAACGTT
TAAAGAGTCTACCAATGCCGTACTATGGGTTTTATCCCAAATTTTCATTTAATGACCACCTTGTTGCATGTACCA
TGAACGAGAGGGTGGATGTATACTGGTGGAGGGAGTGCACAGATACACGCTTAGTTAGGTGTACATTGGGATTTA
AAAGGAGTATCCTTGTGGTGCGTAATATGTTCTATCCCAATACGACTTCAACGTTGATTATTCCTCAGTCTAATT
TATATGTTGTCGGCAGCGACAAACTTCTTGTCTTCACAAGTTTTGCGGACAAATATAAAGCACGCTTGTACGCCC
TGGAATCAGGATATTCTGAAGTCGAAGAACTTGCGAAGGTAGTATCGCATGCGACAAAAATCTGGTCATTTCGTT
TCAGTTCCGAGTACCACAGTCGTGGGATATCACGATTATATTTCGATGGAGCAAACTATCAACAGATCATTGTTA
TGCATGGTGGCATCTGTAATCTCACTATGCCAGCATTGCAAGCCGACAAAGCGACTTTAACAAAGGTTGCAGATT
TTGACCTTCATCAAGAATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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