© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|022370 |
| Gene name | |
| Location | scaffold_11:237319..238501 |
| Strand | + |
| Gene length (bp) | 1182 |
| Transcript length (bp) | 738 |
| Coding sequence length (bp) | 738 |
| Protein length (aa) | 246 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 127.65 | 75.66 | 179.65 |
| Initials | Initials knots | 93.09 | 54.32 | 131.87 |
| Pileal_Stipeal_center | Stage I stipe center | 56.53 | 31.66 | 81.40 |
| Pileal_Stipeal_shell | Stage I stipe shell | 50.52 | 27.88 | 73.17 |
| DIF_stipe_center | Stage II stipe center | 59.14 | 33.16 | 85.11 |
| DIF_stipe_shell | Stage II stipe shell | 70.12 | 40.16 | 100.08 |
| DIF_stipe_skin | Stage II stipe skin | 50.48 | 27.53 | 73.44 |
| DIF_cap_skin | Stage II cap skin | 39.72 | 21.25 | 58.19 |
| DIF_cap_tissue | Stage II cap tissue | 34.55 | 18.18 | 50.93 |
| DIF_gill_tissue | Stage II gill tissue | 48.16 | 26.45 | 69.87 |
| YFB_stipe_center | Young fruiting body stipe center | 63.03 | 34.22 | 91.84 |
| YFB_stipe_shell | Young fruiting body stipe shell | 111.34 | 66.06 | 156.63 |
| YFB_stipe_skin | Young fruiting body stipe skin | 72.21 | 41.36 | 103.06 |
| YFB_cap_skin | Young fruiting body cap skin | 41.78 | 22.53 | 61.02 |
| YFB_cap_tissue | Young fruiting body cap tissue | 38.37 | 20.35 | 56.39 |
| YFB_gill_tissue | Young fruiting body gill tissue | 86.20 | 49.45 | 122.94 |
| YFB_veil | Young fruiting body veil | 67.71 | 36.33 | 99.10 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.000613 | yes |
| Casing | YFB_stipe_center | 0.009773 | yes |
| Casing | YFB_stipe_shell | 0.749575 | no |
| Casing | YFB_stipe_skin | 0.032266 | yes |
| Casing | YFB_cap_skin | 0.000613 | yes |
| Casing | YFB_cap_tissue | 0.000613 | yes |
| Casing | YFB_gill_tissue | 0.190974 | no |
| Casing | YFB_veil | 0.022892 | yes |
| Casing | Initials | 0.318785 | no |
| Casing | Pileal_Stipeal_center | 0.001140 | yes |
| Casing | Pileal_Stipeal_shell | 0.000613 | yes |
| Casing | DIF_stipe_center | 0.002084 | yes |
| Casing | DIF_stipe_shell | 0.024946 | yes |
| Casing | DIF_stipe_skin | 0.001140 | yes |
| Casing | DIF_cap_skin | 0.000613 | yes |
| Casing | DIF_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.482816 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_skin | 0.205647 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.769029 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.586660 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.042041 | yes |
| DIF_gill_tissue | YFB_veil | 0.331609 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.048212 | yes |
| YFB_stipe_center | YFB_stipe_skin | 0.780875 | no |
| YFB_stipe_center | YFB_cap_skin | 0.238543 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.136458 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.387851 | no |
| YFB_stipe_center | YFB_veil | 0.899698 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.141536 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.000613 | yes |
| YFB_stipe_shell | YFB_cap_tissue | 0.000613 | yes |
| YFB_stipe_shell | YFB_gill_tissue | 0.467739 | no |
| YFB_stipe_shell | YFB_veil | 0.092841 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.068081 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.033444 | yes |
| YFB_stipe_skin | YFB_gill_tissue | 0.670953 | no |
| YFB_stipe_skin | YFB_veil | 0.906383 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.884579 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.013485 | yes |
| YFB_cap_skin | YFB_veil | 0.136741 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.006032 | yes |
| YFB_cap_tissue | YFB_veil | 0.075382 | no |
| YFB_gill_tissue | YFB_veil | 0.533406 | no |
| Initials | DIF_gill_tissue | 0.014668 | yes |
| Initials | YFB_stipe_center | 0.227594 | no |
| Initials | YFB_stipe_shell | 0.655730 | no |
| Initials | YFB_stipe_skin | 0.480754 | no |
| Initials | YFB_cap_skin | 0.003765 | yes |
| Initials | YFB_cap_tissue | 0.000613 | yes |
| Initials | YFB_gill_tissue | 0.884007 | no |
| Initials | YFB_veil | 0.357885 | no |
| Initials | Pileal_Stipeal_center | 0.083843 | no |
| Initials | Pileal_Stipeal_shell | 0.027943 | yes |
| Initials | DIF_stipe_center | 0.127489 | no |
| Initials | DIF_stipe_shell | 0.412526 | no |
| Initials | DIF_stipe_skin | 0.031800 | yes |
| Initials | DIF_cap_skin | 0.000613 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.723223 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.835679 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.011968 | yes |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.514796 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.419555 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.263795 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.171663 | no |
| Pileal_Stipeal_center | YFB_veil | 0.681460 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.824078 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.938213 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.589565 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.824701 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.308718 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.116723 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.934353 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.600056 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.002951 | yes |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.287100 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.672072 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.489586 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.069387 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.436004 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.733131 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.340799 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.998365 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.555900 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.283077 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.617784 | no |
| DIF_stipe_center | YFB_stipe_center | 0.911177 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.020790 | yes |
| DIF_stipe_center | YFB_stipe_skin | 0.619299 | no |
| DIF_stipe_center | YFB_cap_skin | 0.329846 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.197111 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.247368 | no |
| DIF_stipe_center | YFB_veil | 0.774765 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.690658 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.730845 | no |
| DIF_stipe_center | DIF_cap_skin | 0.234076 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.083158 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.250478 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.835679 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.112576 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.960236 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.095962 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.042041 | yes |
| DIF_stipe_shell | YFB_gill_tissue | 0.602108 | no |
| DIF_stipe_shell | YFB_veil | 0.951906 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.354742 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.057550 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.011968 | yes |
| DIF_stipe_skin | DIF_gill_tissue | 0.937016 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.606119 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.004160 | yes |
| DIF_stipe_skin | YFB_stipe_skin | 0.297869 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.682175 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.501161 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.074840 | no |
| DIF_stipe_skin | YFB_veil | 0.444640 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.564266 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.297207 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.657845 | no |
| DIF_cap_skin | YFB_stipe_center | 0.154913 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_skin | YFB_stipe_skin | 0.042041 | yes |
| DIF_cap_skin | YFB_cap_skin | 0.934603 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.956458 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.005302 | yes |
| DIF_cap_skin | YFB_veil | 0.090658 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.781076 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.361624 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.055381 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.000613 | yes |
| DIF_cap_tissue | YFB_stipe_skin | 0.011968 | yes |
| DIF_cap_tissue | YFB_cap_skin | 0.683743 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.851237 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.001140 | yes |
| DIF_cap_tissue | YFB_veil | 0.029408 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|022370 MYSSFFTLILAVAGSVVNALPTADAPALVPRDCSAEVAALNMKRAEKRGLDARSVWPGPQNTTCVLAPESPKENY VAGMPARSDIAGGQDGLEFVLDVAVMDVTTCKVLPNTMVELWSPNAMGQYGNFLRGGTTTSSGGIAEFRTIYPGM SKGANHVNIAVHTSSSMSSSTTHVGKLFFVDRWNELILGTSPYTQNSNPKVLDNQDADYRNAVSKGYSPVISITS IHDDWPEGVVGIVTVGVNPH* |
| Coding | >AgabiH97|022370 ATGTACTCCAGTTTCTTCACTCTCATCCTCGCCGTCGCTGGCTCGGTTGTTAATGCCCTCCCAACGGCTGATGCC CCAGCGCTGGTTCCGCGTGATTGCTCTGCTGAAGTAGCTGCGCTCAACATGAAGCGCGCTGAGAAACGTGGTCTC GATGCACGTTCAGTCTGGCCCGGTCCTCAGAACACGACATGCGTTCTTGCCCCCGAATCACCCAAAGAAAATTAC GTCGCTGGAATGCCTGCCAGATCCGACATTGCCGGCGGACAAGATGGACTCGAGTTTGTCCTCGACGTGGCTGTC ATGGATGTCACCACCTGTAAAGTGCTTCCCAACACAATGGTTGAACTCTGGTCCCCTAACGCGATGGGTCAATAC GGAAACTTCCTCCGAGGCGGCACTACCACATCATCGGGCGGTATTGCTGAATTCAGGACCATATACCCTGGAATG TCAAAGGGTGCCAACCACGTTAACATTGCAGTCCACACCTCTTCCAGCATGTCTTCTTCCACCACTCACGTTGGA AAACTTTTCTTCGTGGACAGGTGGAATGAGCTTATCCTTGGTACATCCCCATACACCCAAAATTCTAACCCCAAG GTTTTGGACAATCAAGACGCTGACTACAGGAATGCTGTGAGCAAAGGATATTCCCCCGTTATCTCCATTACTTCT ATCCATGATGACTGGCCAGAGGGTGTTGTCGGGATCGTCACTGTCGGTGTTAACCCTCACTAA |
| Transcript | >AgabiH97|022370 ATGTACTCCAGTTTCTTCACTCTCATCCTCGCCGTCGCTGGCTCGGTTGTTAATGCCCTCCCAACGGCTGATGCC CCAGCGCTGGTTCCGCGTGATTGCTCTGCTGAAGTAGCTGCGCTCAACATGAAGCGCGCTGAGAAACGTGGTCTC GATGCACGTTCAGTCTGGCCCGGTCCTCAGAACACGACATGCGTTCTTGCCCCCGAATCACCCAAAGAAAATTAC GTCGCTGGAATGCCTGCCAGATCCGACATTGCCGGCGGACAAGATGGACTCGAGTTTGTCCTCGACGTGGCTGTC ATGGATGTCACCACCTGTAAAGTGCTTCCCAACACAATGGTTGAACTCTGGTCCCCTAACGCGATGGGTCAATAC GGAAACTTCCTCCGAGGCGGCACTACCACATCATCGGGCGGTATTGCTGAATTCAGGACCATATACCCTGGAATG TCAAAGGGTGCCAACCACGTTAACATTGCAGTCCACACCTCTTCCAGCATGTCTTCTTCCACCACTCACGTTGGA AAACTTTTCTTCGTGGACAGGTGGAATGAGCTTATCCTTGGTACATCCCCATACACCCAAAATTCTAACCCCAAG GTTTTGGACAATCAAGACGCTGACTACAGGAATGCTGTGAGCAAAGGATATTCCCCCGTTATCTCCATTACTTCT ATCCATGATGACTGGCCAGAGGGTGTTGTCGGGATCGTCACTGTCGGTGTTAACCCTCACTAA |
| Gene | >AgabiH97|022370 ATGTACTCCAGTTTCTTCACTCTCATCCTCGCCGTCGCTGGCTCGGTTGTTAATGGCAAGTGCCTCGACATTACG CTCCACGAAGACTAATTGAACGGACTTGCCAGCCCTCCCAACGGCTGATGCCCCAGCGCTGGTTCCGCGTGATTG CTCTGCTGAAGTAGCTGCGCTCAACATGAAGCGCGCTGAGAAACGTGGTCTCGATGCACGTTCAGTCTGGCCCGG TCCTCAGAACGTAAGTCAGACGGCCATAGATATATACGTCTTTCATTGGTCTAACTGTAAACCACAGACGACATG CGTTCTTGCCCCCGAATCACCCAAAGGTACTTTCGCTCAACCGCTACTCCGTAATCAATGCCTCACTGACATTGT GATCCTAGAAAATTACGTCGCTGGAATGGTAAGGGCATTGTCTCACCGGCAATAATTTATTTTGTACTAACTGCT TCATAAGCCTGCCAGATCCGACATTGCCGGCGGACAAGAGTACGTTCCGGTGCTCACAATATATTCCATTGCTTA AGTTCTTAATCTTCTTGTTTTTATACACAGTGGACTCGAGTTTGTCCTCGACGTGGCTGTCATGGATGTCACCAC CTGTAAAGTGCTTCCCAACACAATGGTTGAACTCTGGTCCCGTAAGTGAGCGTTTACAAGGATGAGTGGATTATA CTGATTGATCGCTCAGCTAACGCGATGGGTCAATACGGAAACTTCCTCCGAGGCGGCACTACCACATCATCGGGC GGTATTGCTGAATTCAGGACCATATACCCTGGAATGTCAAAGGGTGCCAACCACGTTAACATTGCAGTCCACACC TCTTCCAGCATGTCTTCTTCCACCACTCACGTTGGAAAACTTTTCTTCGTGGACAGGTGGAATGAGCTTATCCTT GGTACATCCCCATACACCCAAAATTCTAACCCCAAGGTTTTGGACAATCAAGACGCTGACTACAGGAATGCTGTG AGCAAAGGATATTCCCCCGTTATCTCGTAAGCACTTTTTCTTCTAAAAAATTAGCTTTTTTCCCCCACTAAAACT TCTCCAGCATTACTTCTATCCATGATGACTGGCCAGAGGGTGTTGTCGGGATCGTCAGTAAGTGTTGTTGTATCA ATCCATAGATTGTGACTCAGTTAGACTTCCTCAGCTGTCGGTGTTAACCCTCACTAA |