Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|022330
Gene name
Locationscaffold_11:226810..228654
Strand-
Gene length (bp)1844
Transcript length (bp)1461
Coding sequence length (bp)1461
Protein length (aa) 487

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00092 VWA von Willebrand factor type A domain 4.1E-05 265 413

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)		 D score
(significance: > 0.45)
No 1 - 34 0.5

Transmembrane Domains

Domain # Start End Length
1 20 42 22
2 49 71 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 75.33 33.08 117.58
Initials Initials knots 139.62 79.70 199.53
Pileal_Stipeal_center Stage I stipe center 36.73 21.46 52.01
Pileal_Stipeal_shell Stage I stipe shell 170.99 90.77 251.20
DIF_stipe_center Stage II stipe center 46.27 27.42 65.12
DIF_stipe_shell Stage II stipe shell 13.04 6.70 19.37
DIF_stipe_skin Stage II stipe skin 27.23 13.71 40.75
DIF_cap_skin Stage II cap skin 97.24 57.18 137.30
DIF_cap_tissue Stage II cap tissue 292.08 161.55 422.62
DIF_gill_tissue Stage II gill tissue 316.29 169.61 462.98
YFB_stipe_center Young fruiting body stipe center 5.00 2.14 7.87
YFB_stipe_shell Young fruiting body stipe shell 4.94 2.14 7.74
YFB_stipe_skin Young fruiting body stipe skin 5.86 2.67 9.05
YFB_cap_skin Young fruiting body cap skin 18.62 9.87 27.38
YFB_cap_tissue Young fruiting body cap tissue 56.19 32.69 79.70
YFB_gill_tissue Young fruiting body gill tissue 51.29 27.65 74.92
YFB_veil Young fruiting body veil 79.09 39.98 118.20

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.000613 yes
Casing YFB_stipe_center 0.000613 yes
Casing YFB_stipe_shell 0.000613 yes
Casing YFB_stipe_skin 0.000613 yes
Casing YFB_cap_skin 0.000613 yes
Casing YFB_cap_tissue 0.467414 no
Casing YFB_gill_tissue 0.334080 no
Casing YFB_veil 0.942703 no
Casing Initials 0.062807 no
Casing Pileal_Stipeal_center 0.028437 yes
Casing Pileal_Stipeal_shell 0.010728 yes
Casing DIF_stipe_center 0.159322 no
Casing DIF_stipe_shell 0.000613 yes
Casing DIF_stipe_skin 0.001140 yes
Casing DIF_cap_skin 0.550468 no
Casing DIF_cap_tissue 0.000613 yes
DIF_gill_tissue YFB_stipe_center 0.000613 yes
DIF_gill_tissue YFB_stipe_shell 0.000613 yes
DIF_gill_tissue YFB_stipe_skin 0.000613 yes
DIF_gill_tissue YFB_cap_skin 0.000613 yes
DIF_gill_tissue YFB_cap_tissue 0.000613 yes
DIF_gill_tissue YFB_gill_tissue 0.000613 yes
DIF_gill_tissue YFB_veil 0.000613 yes
YFB_stipe_center YFB_stipe_shell 0.985017 no
YFB_stipe_center YFB_stipe_skin 0.801138 no
YFB_stipe_center YFB_cap_skin 0.000613 yes
YFB_stipe_center YFB_cap_tissue 0.000613 yes
YFB_stipe_center YFB_gill_tissue 0.000613 yes
YFB_stipe_center YFB_veil 0.000613 yes
YFB_stipe_shell YFB_stipe_skin 0.784224 no
YFB_stipe_shell YFB_cap_skin 0.000613 yes
YFB_stipe_shell YFB_cap_tissue 0.000613 yes
YFB_stipe_shell YFB_gill_tissue 0.000613 yes
YFB_stipe_shell YFB_veil 0.000613 yes
YFB_stipe_skin YFB_cap_skin 0.000613 yes
YFB_stipe_skin YFB_cap_tissue 0.000613 yes
YFB_stipe_skin YFB_gill_tissue 0.000613 yes
YFB_stipe_skin YFB_veil 0.000613 yes
YFB_cap_skin YFB_cap_tissue 0.000613 yes
YFB_cap_skin YFB_gill_tissue 0.000613 yes
YFB_cap_skin YFB_veil 0.000613 yes
YFB_cap_tissue YFB_gill_tissue 0.862364 no
YFB_cap_tissue YFB_veil 0.348314 no
YFB_gill_tissue YFB_veil 0.232528 no
Initials DIF_gill_tissue 0.004160 yes
Initials YFB_stipe_center 0.000613 yes
Initials YFB_stipe_shell 0.000613 yes
Initials YFB_stipe_skin 0.000613 yes
Initials YFB_cap_skin 0.000613 yes
Initials YFB_cap_tissue 0.000613 yes
Initials YFB_gill_tissue 0.000613 yes
Initials YFB_veil 0.072862 no
Initials Pileal_Stipeal_center 0.000613 yes
Initials Pileal_Stipeal_shell 0.635348 no
Initials DIF_stipe_center 0.000613 yes
Initials DIF_stipe_shell 0.000613 yes
Initials DIF_stipe_skin 0.000613 yes
Initials DIF_cap_skin 0.260183 no
Initials DIF_cap_tissue 0.005671 yes
Pileal_Stipeal_center DIF_gill_tissue 0.000613 yes
Pileal_Stipeal_center YFB_stipe_center 0.000613 yes
Pileal_Stipeal_center YFB_stipe_shell 0.000613 yes
Pileal_Stipeal_center YFB_stipe_skin 0.000613 yes
Pileal_Stipeal_center YFB_cap_skin 0.019715 yes
Pileal_Stipeal_center YFB_cap_tissue 0.155573 no
Pileal_Stipeal_center YFB_gill_tissue 0.338858 no
Pileal_Stipeal_center YFB_veil 0.010728 yes
Pileal_Stipeal_center Pileal_Stipeal_shell 0.000613 yes
Pileal_Stipeal_center DIF_stipe_center 0.519276 no
Pileal_Stipeal_center DIF_stipe_shell 0.000613 yes
Pileal_Stipeal_center DIF_stipe_skin 0.433300 no
Pileal_Stipeal_center DIF_cap_skin 0.000613 yes
Pileal_Stipeal_center DIF_cap_tissue 0.000613 yes
Pileal_Stipeal_shell DIF_gill_tissue 0.049882 yes
Pileal_Stipeal_shell YFB_stipe_center 0.000613 yes
Pileal_Stipeal_shell YFB_stipe_shell 0.000613 yes
Pileal_Stipeal_shell YFB_stipe_skin 0.000613 yes
Pileal_Stipeal_shell YFB_cap_skin 0.000613 yes
Pileal_Stipeal_shell YFB_cap_tissue 0.000613 yes
Pileal_Stipeal_shell YFB_gill_tissue 0.000613 yes
Pileal_Stipeal_shell YFB_veil 0.013186 yes
Pileal_Stipeal_shell DIF_stipe_center 0.000613 yes
Pileal_Stipeal_shell DIF_stipe_shell 0.000613 yes
Pileal_Stipeal_shell DIF_stipe_skin 0.000613 yes
Pileal_Stipeal_shell DIF_cap_skin 0.059318 no
Pileal_Stipeal_shell DIF_cap_tissue 0.082633 no
DIF_stipe_center DIF_gill_tissue 0.000613 yes
DIF_stipe_center YFB_stipe_center 0.000613 yes
DIF_stipe_center YFB_stipe_shell 0.000613 yes
DIF_stipe_center YFB_stipe_skin 0.000613 yes
DIF_stipe_center YFB_cap_skin 0.002084 yes
DIF_stipe_center YFB_cap_tissue 0.611910 no
DIF_stipe_center YFB_gill_tissue 0.837435 no
DIF_stipe_center YFB_veil 0.088442 no
DIF_stipe_center DIF_stipe_shell 0.000613 yes
DIF_stipe_center DIF_stipe_skin 0.092330 no
DIF_stipe_center DIF_cap_skin 0.004928 yes
DIF_stipe_center DIF_cap_tissue 0.000613 yes
DIF_stipe_shell DIF_gill_tissue 0.000613 yes
DIF_stipe_shell YFB_stipe_center 0.006387 yes
DIF_stipe_shell YFB_stipe_shell 0.006387 yes
DIF_stipe_shell YFB_stipe_skin 0.018896 yes
DIF_stipe_shell YFB_cap_skin 0.356035 no
DIF_stipe_shell YFB_cap_tissue 0.000613 yes
DIF_stipe_shell YFB_gill_tissue 0.000613 yes
DIF_stipe_shell YFB_veil 0.000613 yes
DIF_stipe_shell DIF_stipe_skin 0.021583 yes
DIF_stipe_shell DIF_cap_skin 0.000613 yes
DIF_stipe_shell DIF_cap_tissue 0.000613 yes
DIF_stipe_skin DIF_gill_tissue 0.000613 yes
DIF_stipe_skin YFB_stipe_center 0.000613 yes
DIF_stipe_skin YFB_stipe_shell 0.000613 yes
DIF_stipe_skin YFB_stipe_skin 0.000613 yes
DIF_stipe_skin YFB_cap_skin 0.317882 no
DIF_stipe_skin YFB_cap_tissue 0.016386 yes
DIF_stipe_skin YFB_gill_tissue 0.051318 no
DIF_stipe_skin YFB_veil 0.000613 yes
DIF_stipe_skin DIF_cap_skin 0.000613 yes
DIF_stipe_skin DIF_cap_tissue 0.000613 yes
DIF_cap_skin DIF_gill_tissue 0.000613 yes
DIF_cap_skin YFB_stipe_center 0.000613 yes
DIF_cap_skin YFB_stipe_shell 0.000613 yes
DIF_cap_skin YFB_stipe_skin 0.000613 yes
DIF_cap_skin YFB_cap_skin 0.000613 yes
DIF_cap_skin YFB_cap_tissue 0.049674 yes
DIF_cap_skin YFB_gill_tissue 0.031088 yes
DIF_cap_skin YFB_veil 0.633073 no
DIF_cap_skin DIF_cap_tissue 0.000613 yes
DIF_cap_tissue DIF_gill_tissue 0.884457 no
DIF_cap_tissue YFB_stipe_center 0.000613 yes
DIF_cap_tissue YFB_stipe_shell 0.000613 yes
DIF_cap_tissue YFB_stipe_skin 0.000613 yes
DIF_cap_tissue YFB_cap_skin 0.000613 yes
DIF_cap_tissue YFB_cap_tissue 0.000613 yes
DIF_cap_tissue YFB_gill_tissue 0.000613 yes
DIF_cap_tissue YFB_veil 0.000613 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|022330
MDCSPNTCFTQPPSTAPTSISTLLTSLPVPACGAVISLCMAAHHKLLISVITLSVVVGILLTLSLILLFFWCLRL
RHGREGPIPVEGGSVDTTESILERPKLSDRLGTGSNVTKVEEVAVLPSPLELGPPSSSKPQLDVRDAIQESHILP
LSRVSSATSVHAFSEDDQSQCPCAQSDMVSQCSEHQSTPAPSIGALSIDDFDQGQDDEFHPEVRALVESGKFTKD
AVRNMKPVAPKSGTVIPDYNPILDEVRPKKMDDYIRDYRIFFVIDDSGSMVPHWNETRDALSEIADYALNYHTDT
IDIRFFNSGYSRRGVRGMKEVMGAFRSVSPSNGTPTGPVLKEVLDQQLDRLNAAQSDGTYSSERPLDIIVLTDGV
PNQGPPPATVIEEAAKRFKAAGHHQNWVGIQFVQIGDDENAGPTLLSLIDCANNNHMVDTISYSLYKEQGGGKLT
PQILKRIILGALHPNLRSYWNQFRHKVNERTSQVIY*
Coding >AgabiH97|022330
ATGGACTGTTCACCCAACACCTGCTTTACGCAGCCACCTTCAACTGCCCCCACGTCAATTAGTACTCTTCTAACC
AGCTTACCTGTTCCCGCTTGCGGAGCAGTCATTTCGTTGTGTATGGCTGCCCATCATAAACTGCTTATTTCCGTG
ATCACTCTCAGCGTTGTAGTGGGAATCCTCTTAACTCTGTCTTTGATTCTCCTGTTTTTTTGGTGTCTTAGGCTT
CGGCATGGCAGGGAGGGACCTATTCCGGTCGAGGGCGGTTCAGTTGATACTACCGAGTCGATCCTTGAACGACCT
AAACTGTCTGACCGACTCGGTACTGGCAGTAATGTAACCAAAGTTGAAGAGGTTGCTGTACTGCCTTCTCCACTG
GAATTAGGGCCCCCTTCCTCGTCGAAGCCACAATTAGATGTACGAGACGCTATTCAAGAAAGTCACATTCTTCCT
CTTTCCAGAGTTTCGTCTGCTACCTCTGTACATGCATTTTCAGAAGACGATCAATCGCAATGTCCGTGCGCACAA
TCCGACATGGTTTCCCAGTGTTCGGAGCACCAATCTACCCCAGCCCCCTCCATCGGCGCTCTCTCTATTGACGAT
TTCGATCAAGGACAGGATGATGAATTCCATCCTGAAGTACGCGCACTTGTGGAGTCAGGGAAGTTTACAAAGGAT
GCCGTTCGAAATATGAAGCCCGTCGCGCCCAAGTCTGGTACTGTCATACCCGACTATAATCCCATCCTAGACGAA
GTAAGGCCAAAAAAAATGGATGATTATATCCGTGATTATCGAATTTTCTTCGTCATAGACGATTCGGGATCCATG
GTGCCGCATTGGAATGAAACACGGGACGCTCTTTCAGAGATTGCCGATTATGCCCTCAATTATCACACAGACACG
ATTGATATTCGTTTCTTTAATTCGGGATATTCAAGGCGCGGAGTTCGAGGTATGAAAGAAGTGATGGGCGCGTTC
CGTTCTGTCTCGCCATCTAACGGAACCCCAACTGGTCCAGTACTCAAAGAAGTACTTGATCAACAACTCGATCGT
CTCAATGCTGCCCAAAGCGACGGGACATATTCTTCAGAACGTCCCCTGGACATCATTGTCCTTACAGACGGCGTG
CCGAACCAGGGCCCTCCTCCTGCCACAGTCATAGAAGAAGCTGCCAAGCGATTCAAGGCTGCAGGGCATCACCAA
AATTGGGTTGGCATCCAGTTTGTACAAATCGGGGACGACGAAAACGCGGGCCCGACCCTCTTGTCCCTAATCGAC
TGCGCAAACAATAATCATATGGTTGATACCATCAGTTATAGTTTGTACAAAGAGCAGGGAGGCGGAAAATTGACT
CCTCAGATCTTGAAACGCATTATTTTGGGCGCGTTGCATCCTAATTTGCGCTCGTACTGGAACCAATTCCGCCAT
AAGGTGAATGAGAGAACGTCTCAGGTGATTTATTGA
Transcript >AgabiH97|022330
ATGGACTGTTCACCCAACACCTGCTTTACGCAGCCACCTTCAACTGCCCCCACGTCAATTAGTACTCTTCTAACC
AGCTTACCTGTTCCCGCTTGCGGAGCAGTCATTTCGTTGTGTATGGCTGCCCATCATAAACTGCTTATTTCCGTG
ATCACTCTCAGCGTTGTAGTGGGAATCCTCTTAACTCTGTCTTTGATTCTCCTGTTTTTTTGGTGTCTTAGGCTT
CGGCATGGCAGGGAGGGACCTATTCCGGTCGAGGGCGGTTCAGTTGATACTACCGAGTCGATCCTTGAACGACCT
AAACTGTCTGACCGACTCGGTACTGGCAGTAATGTAACCAAAGTTGAAGAGGTTGCTGTACTGCCTTCTCCACTG
GAATTAGGGCCCCCTTCCTCGTCGAAGCCACAATTAGATGTACGAGACGCTATTCAAGAAAGTCACATTCTTCCT
CTTTCCAGAGTTTCGTCTGCTACCTCTGTACATGCATTTTCAGAAGACGATCAATCGCAATGTCCGTGCGCACAA
TCCGACATGGTTTCCCAGTGTTCGGAGCACCAATCTACCCCAGCCCCCTCCATCGGCGCTCTCTCTATTGACGAT
TTCGATCAAGGACAGGATGATGAATTCCATCCTGAAGTACGCGCACTTGTGGAGTCAGGGAAGTTTACAAAGGAT
GCCGTTCGAAATATGAAGCCCGTCGCGCCCAAGTCTGGTACTGTCATACCCGACTATAATCCCATCCTAGACGAA
GTAAGGCCAAAAAAAATGGATGATTATATCCGTGATTATCGAATTTTCTTCGTCATAGACGATTCGGGATCCATG
GTGCCGCATTGGAATGAAACACGGGACGCTCTTTCAGAGATTGCCGATTATGCCCTCAATTATCACACAGACACG
ATTGATATTCGTTTCTTTAATTCGGGATATTCAAGGCGCGGAGTTCGAGGTATGAAAGAAGTGATGGGCGCGTTC
CGTTCTGTCTCGCCATCTAACGGAACCCCAACTGGTCCAGTACTCAAAGAAGTACTTGATCAACAACTCGATCGT
CTCAATGCTGCCCAAAGCGACGGGACATATTCTTCAGAACGTCCCCTGGACATCATTGTCCTTACAGACGGCGTG
CCGAACCAGGGCCCTCCTCCTGCCACAGTCATAGAAGAAGCTGCCAAGCGATTCAAGGCTGCAGGGCATCACCAA
AATTGGGTTGGCATCCAGTTTGTACAAATCGGGGACGACGAAAACGCGGGCCCGACCCTCTTGTCCCTAATCGAC
TGCGCAAACAATAATCATATGGTTGATACCATCAGTTATAGTTTGTACAAAGAGCAGGGAGGCGGAAAATTGACT
CCTCAGATCTTGAAACGCATTATTTTGGGCGCGTTGCATCCTAATTTGCGCTCGTACTGGAACCAATTCCGCCAT
AAGGTGAATGAGAGAACGTCTCAGGTGATTTATTGA
Gene >AgabiH97|022330
ATGGACTGTTCACCCAACACCTGCTTTACGCAGTGAGTAGTTTCATCCAGTTTCTGATAGTCTCCTTAATTTGAC
GCCACGGGATGGCAGGCCACCTTCAACTGCCCCCACGTCAATTAGTACTCTTCTAACCAGCTTACCTGTTCCCGC
TTGCGGAGCAGTCATTTCGTTGTGTATGGCTGCCCATCATAAACTGCTTATTTCCGTGATCACTCTCAGCGTTGT
AGTGGGAATCCTCTTAACTCTGTCTTTGATTCTCCTGTTTTTTTGGTGTCTTAGGCTTCGGCATGGCAGGGAGGG
ACCTATTCCGGTCGAGGGCGGTTCAGTTGATACTACCGAGTCGATCCTTGAACGACCTAAACTGTCTGACCGACT
CGGTACTGGCAGTAATGTAACCAAAGTTGAAGAGGTTGCTGTACTGCCTTCTCCACTGGAATTAGGGCCCCCTTC
CTCGTCGAAGCCACAATTAGATGTACGAGACGCTATTCAAGAAAGTCACATTCTTCCTCTTTCCAGAGTTTCGTC
TGCTACCTCTGTACATGCATTTTCAGAAGACGATCAATCGCAATGTCCGTGCGCACAATCCGACATGGTTTCCCA
GTGTTCGGAGCACCAATCTACCCCAGCCCCCTCCATCGGCGCTCTCTCTATTGACGATTTCGATCAAGGACAGGA
TGATGAATTCCATCCTGAAGTACGCGCACTTGTGGAGTCAGGGAAGTTTACAAAGGATGCCGTTCGAAATATGAA
GCCCGTCGCGCCCAAGTCTGGTACTGTCATACCCGACTATAATCCCATCCTAGACGAAGTAAGGCCAAAAAAAAT
GGATGATTATATCCGGTGAGTGCTTATTCGACTAATGATCTTTCTAACGTTGACGAGTTTCACAGTGATTATCGA
ATTTTCTTCGTCATAGACGATTCGGGATCCGTAAGTCTGATATTGCATGGTCTGGTAAGCATTAATGAATATGTC
TCGTTGATTGCAGATGGTGCCGCATTGGAATGAAACACGGGACGCTCTTTCAGAGATTGCCGATTATGCCCTCAA
TTATCACACAGACACGATTGATATTCGTTTCTTTAATTCGGGATATTCAAGGCGCGGAGTTCGAGTACGATATTT
GTCTTCCGCTCGCAATCCAGAACATTGTTGTCCTTACTATATCAATGACAGGGTATGAAAGAAGTGATGGGCGCG
TTCCGTTCTGTCTCGCCATCTAGTGAGTCTTACATACATTATCAGTCTGGATAAAGCATAACGAGAAAAAGACGG
AACCCCAACTGGTCCAGTACTCAAAGAAGTACTTGATCAACAACTCGATCGTCTCAATGCTGCCCAAAGCGACGG
GACATATTCTTCAGAACGTCCCCTGGACATCATTGTCCTTACAGACGGCGTGCCGAGTGAGATCTTTCTGCTTTA
CCTCATTGTTCAGATTAATGATTTATCTTGATAGACCAGGGCCCTCCTCCTGCCACAGTCATAGAAGAAGCTGCC
AAGCGATTCAAGGCTGCAGGGCATCACCAAAATTGGGTTGGCATCCAGTTTGTACAAATCGGGGACGACGAAAAC
GCGGGCCCGACCCTCTTGTCCCTAATCGACTGCGCAAACAATAATGTGAGTTGATTTGTAAAAAGTAGAGCTTGA
CTAACCTTCTTTCTACTTGATAGCATATGGTTGATACCATCAGTTATAGTTTGTACAAAGAGCAGGGAGGCGGAA
AATTGACTCCTCAGATCTTGAAACGCATTATTTTGGGCGCGTTGCATCCTAATTTGCGCTCGTACTGGAACCAAT
TCCGCCATAAGGTGAATGAGAGAACGTCTCAGGTGATTTATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail