Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|021350
Gene name
Locationscaffold_10:1711002..1711363
Strand-
Gene length (bp)361
Transcript length (bp)309
Coding sequence length (bp)309
Protein length (aa) 103

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF19373 DUF5948 Family of unknown function (DUF5948) 3.8E-22 35 101

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

Domain # Start End Length
1 4 23 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|021350
MRSSLTIFALIVSTAVGAFAGAIERDHLFKRGGPEICTANLDGSGEPDAQVTKDCCAAVDHEAYFNEAFKQCWPY
SGPAGNSIDTGAMVDCCSSRDRGSRAV*
Coding >AgabiH97|021350
ATGCGATCCTCTCTCACTATCTTTGCTCTCATCGTTTCCACCGCCGTTGGTGCCTTTGCCGGCGCAATCGAGCGT
GATCATCTTTTTAAGCGAGGAGGGCCAGAAATTTGCACCGCCAACTTGGACGGCAGCGGAGAGCCCGATGCGCAG
GTCACCAAAGATTGCTGCGCTGCCGTTGATCACGAGGCCTATTTCAACGAGGCATTCAAACAGTGCTGGCCTTAC
AGTGGTCCCGCGGGAAACAGCATTGATACGGGAGCGATGGTTGATTGCTGCTCTAGCCGTGACCGCGGAAGCCGT
GCAGTCTAA
Transcript >AgabiH97|021350
ATGCGATCCTCTCTCACTATCTTTGCTCTCATCGTTTCCACCGCCGTTGGTGCCTTTGCCGGCGCAATCGAGCGT
GATCATCTTTTTAAGCGAGGAGGGCCAGAAATTTGCACCGCCAACTTGGACGGCAGCGGAGAGCCCGATGCGCAG
GTCACCAAAGATTGCTGCGCTGCCGTTGATCACGAGGCCTATTTCAACGAGGCATTCAAACAGTGCTGGCCTTAC
AGTGGTCCCGCGGGAAACAGCATTGATACGGGAGCGATGGTTGATTGCTGCTCTAGCCGTGACCGCGGAAGCCGT
GCAGTCTAA
Gene >AgabiH97|021350
ATGCGATCCTCTCTCACTATCTTTGCTCTCATCGTTTCCACCGCCGTTGGTGCCTTTGCCGGCGCAATCGAGCGT
GGTAGGTGAACCTTTGCATCTTGTTCCTACCCCTCCTGACACATGTTCCTTAGATCATCTTTTTAAGCGAGGAGG
GCCAGAAATTTGCACCGCCAACTTGGACGGCAGCGGAGAGCCCGATGCGCAGGTCACCAAAGATTGCTGCGCTGC
CGTTGATCACGAGGCCTATTTCAACGAGGCATTCAAACAGTGCTGGCCTTACAGTGGTCCCGCGGGAAACAGCAT
TGATACGGGAGCGATGGTTGATTGCTGCTCTAGCCGTGACCGCGGAAGCCGTGCAGTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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