Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|021290
Gene name
Locationscaffold_10:1691819..1692183
Strand+
Gene length (bp)364
Transcript length (bp)312
Coding sequence length (bp)312
Protein length (aa) 104

Your browser does not support drawing a protein figure.

PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF19373 DUF5948 Family of unknown function (DUF5948) 1.9E-20 36 101

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 21 0.45

Transmembrane Domains

Domain # Start End Length
1 5 24 19

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|021290
MRASFTIFVLIVSAAVGAFASPVIERGQLAKRGGPQICTDRTDGSGETDEQVTKDCCAAVDHKAYFNEVFKQCWP
YSGPAGNSVDEGKLAECCSSRGGGSRRV*
Coding >AgabiH97|021290
ATGCGAGCCTCTTTCACTATTTTTGTTCTTATCGTTTCTGCCGCTGTCGGTGCCTTTGCCAGCCCCGTAATCGAG
CGTGGACAACTTGCCAAGCGAGGAGGGCCACAAATTTGCACAGACAGGACGGACGGCAGCGGAGAGACTGACGAG
CAGGTCACTAAAGATTGCTGTGCCGCTGTTGATCATAAGGCCTATTTCAACGAGGTATTCAAACAGTGCTGGCCT
TACAGTGGCCCCGCGGGAAACAGCGTTGATGAGGGGAAGTTGGCTGAATGCTGCTCTAGCCGTGGCGGTGGAAGT
CGTAGAGTCTAA
Transcript >AgabiH97|021290
ATGCGAGCCTCTTTCACTATTTTTGTTCTTATCGTTTCTGCCGCTGTCGGTGCCTTTGCCAGCCCCGTAATCGAG
CGTGGACAACTTGCCAAGCGAGGAGGGCCACAAATTTGCACAGACAGGACGGACGGCAGCGGAGAGACTGACGAG
CAGGTCACTAAAGATTGCTGTGCCGCTGTTGATCATAAGGCCTATTTCAACGAGGTATTCAAACAGTGCTGGCCT
TACAGTGGCCCCGCGGGAAACAGCGTTGATGAGGGGAAGTTGGCTGAATGCTGCTCTAGCCGTGGCGGTGGAAGT
CGTAGAGTCTAA
Gene >AgabiH97|021290
ATGCGAGCCTCTTTCACTATTTTTGTTCTTATCGTTTCTGCCGCTGTCGGTGCCTTTGCCAGCCCCGTAATCGAG
CGTGGTGGGTTAAACTTTGTATCTTGTTCCTACCCCTCCTGACACAAACTCTATAGGACAACTTGCCAAGCGAGG
AGGGCCACAAATTTGCACAGACAGGACGGACGGCAGCGGAGAGACTGACGAGCAGGTCACTAAAGATTGCTGTGC
CGCTGTTGATCATAAGGCCTATTTCAACGAGGTATTCAAACAGTGCTGGCCTTACAGTGGCCCCGCGGGAAACAG
CGTTGATGAGGGGAAGTTGGCTGAATGCTGCTCTAGCCGTGGCGGTGGAAGTCGTAGAGTCTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

Built with Python Django and Wagtail