Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|020990
Gene name
Location	scaffold_10:1605859..1607059
Strand	-
Gene length (bp)	1200
Transcript length (bp)	1200
Coding sequence length (bp)	1200
Protein length (aa)	400

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	9.4E-08	60	149

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 51	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|020990 MQHKDSSLTAWDVSGSSQPLPPLPTAPSELAKENAIRMTLSLQATALIESTLPDYMIREDFNGPGDLWDKMKLNY GVRGPTFVYERLQALINFKVQDTQDPSGQIAEFVAICSQITATGATLHDSLQTMMLLSALPARMESTIGIILAPA TKVADLTIEKARGIITAAWRNPQNLAAARFKPSGQAPRWQNATPGTSGQNQQQQQRPHGQQQQRPQGQQQRQQAP QGAKPDDDKKRKRTRGKGKGKGKGKAAAVEASPPDYTAASVIAFPTIAIPPGIETQPYDPRSPSLSAPTTRSLVH RIRNEKAAITPPTPLIGELSHSTSQSSPNEISVHSPLHMEIIMLNIHDGNKWIDDWRHDVDYQNSIESNPNDLES VDPSADGTWLDDGSREQSISVDCD*
Coding	>AgabiH97\|020990 ATGCAACATAAGGACTCCTCCCTGACCGCATGGGATGTTAGCGGTAGCTCTCAGCCGCTCCCCCCCTTGCCTACA GCTCCTTCTGAGCTAGCTAAGGAAAATGCTATCAGGATGACTCTCAGCCTGCAGGCAACTGCATTGATCGAGTCC ACTCTCCCGGATTACATGATCCGAGAGGATTTCAACGGCCCTGGAGATCTCTGGGACAAAATGAAGTTGAATTAC GGAGTCCGAGGACCGACTTTCGTCTACGAAAGGCTCCAGGCCCTCATAAATTTTAAGGTTCAGGACACCCAGGAT CCATCTGGACAAATCGCTGAGTTCGTCGCGATCTGTTCACAGATCACTGCCACTGGGGCGACTCTTCATGACTCG CTCCAGACCATGATGCTCCTTTCCGCTCTTCCGGCTCGTATGGAATCTACGATCGGAATCATCCTCGCTCCAGCC ACGAAGGTAGCTGATCTCACTATTGAGAAAGCGAGAGGTATTATCACCGCGGCTTGGCGAAACCCTCAGAATCTC GCCGCCGCCAGGTTTAAGCCGTCCGGACAGGCTCCGCGATGGCAGAATGCCACGCCTGGAACATCCGGGCAAAAT CAGCAGCAGCAGCAGCGTCCTCATGGACAGCAGCAGCAACGGCCGCAAGGCCAGCAGCAGAGGCAGCAAGCTCCG CAAGGGGCTAAACCTGATGATGATAAGAAGCGTAAGAGGACTCGTGGCAAAGGCAAGGGCAAGGGAAAAGGAAAA GCCGCAGCGGTCGAGGCCTCGCCTCCCGATTACACTGCAGCTTCTGTGATTGCGTTCCCTACGATCGCGATTCCT CCGGGTATTGAAACCCAACCCTACGACCCTCGCTCACCTTCTCTCTCTGCACCGACCACACGGTCTTTGGTGCAT CGTATCCGAAATGAGAAAGCAGCTATCACGCCGCCGACTCCCTTGATTGGTGAGTTGTCTCATTCTACATCACAA TCATCTCCTAACGAAATTTCTGTGCACTCTCCCCTTCACATGGAAATCATCATGTTAAACATTCATGATGGAAAC AAATGGATTGATGATTGGCGTCACGACGTCGATTACCAAAACTCGATCGAATCTAACCCGAATGATCTCGAATCG GTTGATCCATCTGCTGATGGAACCTGGCTCGATGATGGATCTCGGGAACAATCAATCTCGGTTGATTGCGATTGA
Transcript	>AgabiH97\|020990 ATGCAACATAAGGACTCCTCCCTGACCGCATGGGATGTTAGCGGTAGCTCTCAGCCGCTCCCCCCCTTGCCTACA GCTCCTTCTGAGCTAGCTAAGGAAAATGCTATCAGGATGACTCTCAGCCTGCAGGCAACTGCATTGATCGAGTCC ACTCTCCCGGATTACATGATCCGAGAGGATTTCAACGGCCCTGGAGATCTCTGGGACAAAATGAAGTTGAATTAC GGAGTCCGAGGACCGACTTTCGTCTACGAAAGGCTCCAGGCCCTCATAAATTTTAAGGTTCAGGACACCCAGGAT CCATCTGGACAAATCGCTGAGTTCGTCGCGATCTGTTCACAGATCACTGCCACTGGGGCGACTCTTCATGACTCG CTCCAGACCATGATGCTCCTTTCCGCTCTTCCGGCTCGTATGGAATCTACGATCGGAATCATCCTCGCTCCAGCC ACGAAGGTAGCTGATCTCACTATTGAGAAAGCGAGAGGTATTATCACCGCGGCTTGGCGAAACCCTCAGAATCTC GCCGCCGCCAGGTTTAAGCCGTCCGGACAGGCTCCGCGATGGCAGAATGCCACGCCTGGAACATCCGGGCAAAAT CAGCAGCAGCAGCAGCGTCCTCATGGACAGCAGCAGCAACGGCCGCAAGGCCAGCAGCAGAGGCAGCAAGCTCCG CAAGGGGCTAAACCTGATGATGATAAGAAGCGTAAGAGGACTCGTGGCAAAGGCAAGGGCAAGGGAAAAGGAAAA GCCGCAGCGGTCGAGGCCTCGCCTCCCGATTACACTGCAGCTTCTGTGATTGCGTTCCCTACGATCGCGATTCCT CCGGGTATTGAAACCCAACCCTACGACCCTCGCTCACCTTCTCTCTCTGCACCGACCACACGGTCTTTGGTGCAT CGTATCCGAAATGAGAAAGCAGCTATCACGCCGCCGACTCCCTTGATTGGTGAGTTGTCTCATTCTACATCACAA TCATCTCCTAACGAAATTTCTGTGCACTCTCCCCTTCACATGGAAATCATCATGTTAAACATTCATGATGGAAAC AAATGGATTGATGATTGGCGTCACGACGTCGATTACCAAAACTCGATCGAATCTAACCCGAATGATCTCGAATCG GTTGATCCATCTGCTGATGGAACCTGGCTCGATGATGGATCTCGGGAACAATCAATCTCGGTTGATTGCGATTGA
Gene	>AgabiH97\|020990 ATGCAACATAAGGACTCCTCCCTGACCGCATGGGATGTTAGCGGTAGCTCTCAGCCGCTCCCCCCCTTGCCTACA GCTCCTTCTGAGCTAGCTAAGGAAAATGCTATCAGGATGACTCTCAGCCTGCAGGCAACTGCATTGATCGAGTCC ACTCTCCCGGATTACATGATCCGAGAGGATTTCAACGGCCCTGGAGATCTCTGGGACAAAATGAAGTTGAATTAC GGAGTCCGAGGACCGACTTTCGTCTACGAAAGGCTCCAGGCCCTCATAAATTTTAAGGTTCAGGACACCCAGGAT CCATCTGGACAAATCGCTGAGTTCGTCGCGATCTGTTCACAGATCACTGCCACTGGGGCGACTCTTCATGACTCG CTCCAGACCATGATGCTCCTTTCCGCTCTTCCGGCTCGTATGGAATCTACGATCGGAATCATCCTCGCTCCAGCC ACGAAGGTAGCTGATCTCACTATTGAGAAAGCGAGAGGTATTATCACCGCGGCTTGGCGAAACCCTCAGAATCTC GCCGCCGCCAGGTTTAAGCCGTCCGGACAGGCTCCGCGATGGCAGAATGCCACGCCTGGAACATCCGGGCAAAAT CAGCAGCAGCAGCAGCGTCCTCATGGACAGCAGCAGCAACGGCCGCAAGGCCAGCAGCAGAGGCAGCAAGCTCCG CAAGGGGCTAAACCTGATGATGATAAGAAGCGTAAGAGGACTCGTGGCAAAGGCAAGGGCAAGGGAAAAGGAAAA GCCGCAGCGGTCGAGGCCTCGCCTCCCGATTACACTGCAGCTTCTGTGATTGCGTTCCCTACGATCGCGATTCCT CCGGGTATTGAAACCCAACCCTACGACCCTCGCTCACCTTCTCTCTCTGCACCGACCACACGGTCTTTGGTGCAT CGTATCCGAAATGAGAAAGCAGCTATCACGCCGCCGACTCCCTTGATTGGTGAGTTGTCTCATTCTACATCACAA TCATCTCCTAACGAAATTTCTGTGCACTCTCCCCTTCACATGGAAATCATCATGTTAAACATTCATGATGGAAAC AAATGGATTGATGATTGGCGTCACGACGTCGATTACCAAAACTCGATCGAATCTAACCCGAATGATCTCGAATCG GTTGATCCATCTGCTGATGGAACCTGGCTCGATGATGGATCTCGGGAACAATCAATCTCGGTTGATTGCGATTGA

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