Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|020250
Gene name
Locationscaffold_10:1383821..1385904
Strand+
Gene length (bp)2083
Transcript length (bp)1038
Coding sequence length (bp)1038
Protein length (aa) 346

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF20152 DUF6534 Family of unknown function (DUF6534) 2.2E-14 177 263

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cell membrane Transmembrane domain 0.0928 0.1045 0.1388 0.6652 0.0656 0.0007 0.0977 0.3853 0.4086 0.0033

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 28 50 22
2 62 84 22
3 99 121 22
4 134 156 22
5 171 193 22
6 213 235 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup19
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|004100
Agaricus bisporus var bisporus H39 AgabiH39|406100
Agaricus bisporus var bisporus H39 AgabiH39|386300
Agaricus bisporus var bisporus H39 AgabiH39|386200
Agaricus bisporus var bisporus H39 AgabiH39|102060
Agaricus bisporus var bisporus H39 AgabiH39|095970
Agaricus bisporus var bisporus H39 AgabiH39|103490
Agaricus bisporus var bisporus H39 AgabiH39|095720
Agaricus bisporus var bisporus H39 AgabiH39|022930
Agaricus bisporus var bisporus H39 AgabiH39|020260
Agaricus bisporus var bisporus H39 AgabiH39|020250
Agaricus bisporus var bisporus H39 AgabiH39|095960
Agaricus bisporus var bisporus H97 AgabiH97|096260
Agaricus bisporus var bisporus H97 AgabiH97|103490
Agaricus bisporus var bisporus H97 AgabiH97|103480
Agaricus bisporus var bisporus H97 AgabiH97|103470
Agaricus bisporus var bisporus H97 AgabiH97|102060
Agaricus bisporus var bisporus H97 AgabiH97|096250
Agaricus bisporus var bisporus H97 AgabiH97|020260
Agaricus bisporus var bisporus H97 AgabiH97|095960
Agaricus bisporus var bisporus H97 AgabiH97|095720
Agaricus bisporus var bisporus H97 AgabiH97|022930
Agaricus bisporus var bisporus H97 AgabiH97|020250 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|004100
Agaricus bisporus var bisporus H97 AgabiH97|095970
Rhodonia placenta FPRL280 RhoplFPRL280|25_45
Rhodonia placenta FPRL280 RhoplFPRL280|168_9
Rhodonia placenta FPRL280 RhoplFPRL280|227_13
Rhodonia placenta FPRL280 RhoplFPRL280|435_5

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|020250
MSTSVTSAPSPSATFLPPPDVQLSYGPMLLGVFANMILYGILVAQTFSYYQLYKNDARWIKALVVYLFIIETANT
GIDMAMMYQPLILEYGQQLLSFPVMFAAEPVTIVAISMPIQLFFAWRIFRLTKMTVIPVIVSLLSFVSFAGGIWT
TVKIIMIKSFSRKPELHWSALVWFLSACVADVLITLTLVLNLSRRKTGFSATDDVISKIIRMTVQTGFLTALFAI
GDVVFFMTLGKTALNFLWDLALTKIYANCLMSTLNARAALKEMSSSNHSNTRPFSTMVGASRRPHTGTDHIPPSH
MLELARVSYERSRSQIDDPEYGITVTKVVETMQDEESFHPKGAAL*
Coding >AgabiH97|020250
ATGTCTACTTCAGTGACGTCGGCTCCTTCGCCATCTGCAACGTTCCTTCCTCCACCTGATGTGCAACTATCGTAT
GGGCCGATGCTGCTTGGAGTCTTCGCGAATATGATATTATATGGGATTCTAGTAGCTCAGACGTTTTCGTACTAC
CAGCTTTACAAGAATGATGCACGTTGGATCAAGGCTTTGGTCGTCTATCTCTTTATCATCGAGACCGCAAACACG
GGAATAGATATGGCGATGATGTATCAGCCTCTCATATTGGAATATGGGCAACAGCTGCTCTCATTCCCAGTCATG
TTCGCTGCCGAACCGGTTACAATTGTTGCGATCTCTATGCCTATCCAGCTATTTTTCGCCTGGAGAATTTTTCGT
CTCACGAAAATGACGGTCATTCCTGTTATCGTTTCGCTACTATCATTCGTTTCTTTTGCTGGCGGTATATGGACA
ACTGTTAAGATCATAATGATCAAATCTTTCAGCCGCAAACCCGAACTTCACTGGTCGGCTCTTGTATGGTTTCTC
TCAGCATGCGTCGCCGATGTTCTTATCACTTTAACGCTTGTATTAAACTTGTCGAGACGTAAGACAGGATTTTCC
GCGACAGACGACGTTATTTCGAAAATAATCCGAATGACGGTCCAGACTGGATTCTTAACTGCTCTTTTCGCAATC
GGGGATGTTGTATTTTTCATGACTCTCGGAAAAACGGCTTTGAACTTCCTCTGGGATTTAGCTCTCACTAAAATT
TACGCGAATTGCCTAATGTCCACTTTGAATGCCCGGGCTGCTTTGAAGGAAATGTCAAGCAGTAATCATTCAAAC
ACGCGCCCTTTCTCAACTATGGTTGGGGCTAGTAGACGACCTCACACTGGTACAGACCACATTCCACCATCGCAT
ATGTTAGAACTAGCGCGAGTGTCATACGAGAGGTCACGATCACAGATAGATGACCCTGAGTACGGCATCACAGTA
ACAAAGGTCGTGGAAACCATGCAGGATGAGGAGTCATTTCACCCAAAAGGTGCCGCTCTTTAG
Transcript >AgabiH97|020250
ATGTCTACTTCAGTGACGTCGGCTCCTTCGCCATCTGCAACGTTCCTTCCTCCACCTGATGTGCAACTATCGTAT
GGGCCGATGCTGCTTGGAGTCTTCGCGAATATGATATTATATGGGATTCTAGTAGCTCAGACGTTTTCGTACTAC
CAGCTTTACAAGAATGATGCACGTTGGATCAAGGCTTTGGTCGTCTATCTCTTTATCATCGAGACCGCAAACACG
GGAATAGATATGGCGATGATGTATCAGCCTCTCATATTGGAATATGGGCAACAGCTGCTCTCATTCCCAGTCATG
TTCGCTGCCGAACCGGTTACAATTGTTGCGATCTCTATGCCTATCCAGCTATTTTTCGCCTGGAGAATTTTTCGT
CTCACGAAAATGACGGTCATTCCTGTTATCGTTTCGCTACTATCATTCGTTTCTTTTGCTGGCGGTATATGGACA
ACTGTTAAGATCATAATGATCAAATCTTTCAGCCGCAAACCCGAACTTCACTGGTCGGCTCTTGTATGGTTTCTC
TCAGCATGCGTCGCCGATGTTCTTATCACTTTAACGCTTGTATTAAACTTGTCGAGACGTAAGACAGGATTTTCC
GCGACAGACGACGTTATTTCGAAAATAATCCGAATGACGGTCCAGACTGGATTCTTAACTGCTCTTTTCGCAATC
GGGGATGTTGTATTTTTCATGACTCTCGGAAAAACGGCTTTGAACTTCCTCTGGGATTTAGCTCTCACTAAAATT
TACGCGAATTGCCTAATGTCCACTTTGAATGCCCGGGCTGCTTTGAAGGAAATGTCAAGCAGTAATCATTCAAAC
ACGCGCCCTTTCTCAACTATGGTTGGGGCTAGTAGACGACCTCACACTGGTACAGACCACATTCCACCATCGCAT
ATGTTAGAACTAGCGCGAGTGTCATACGAGAGGTCACGATCACAGATAGATGACCCTGAGTACGGCATCACAGTA
ACAAAGGTCGTGGAAACCATGCAGGATGAGGAGTCATTTCACCCAAAAGGTGCCGCTCTTTAG
Gene >AgabiH97|020250
ATGTCTACTTCAGTGACGTCGGCTCCTTCGCCATCTGCAACGTTCCTTCCTCCACCTGATGTGCAACTATCGTAA
GTCTTCTATCGTATGGCTGGGCTATGTCAAACATAGGATTAGGTATGGGCCGATGCTGCTTGGAGTCTTCGCGAA
TATGATATTATATGGGGTGCGTATGATGACTTCCTGGGACAATGGCAGAGATTGACGCTCATTCCTAGATTCTAG
TAGCTCAGGTACTTCGGCAATGTGTTTATGAAATCCAACGCTTATCTAAATCCGCGTTTCAACAGACGTTTTCGT
ACTACCAGCTTTACAAGAAGTATGATGTCTCTGCGAGAATGTTCGAGCAACGACTTAATCATTAAACAGTGATGC
ACGTTGGATCAAGGCTTTGGTGAGCTTCAAGCAAACCCCAAGGGATACTATGGCTCAATATACCTAGGTCGTCTA
TCTCTTTATCATCGAGACCGCAAACACGGGAATAGATATGGCGATGATGTATCAGCCTCTCATATTGGAATATGG
TCCGTCGTTTCATGCTTTCTTTGGCGAATGGATATTTAGGCTCCCAACAGGGCAACAGCTGCTCTCATTCCCAGT
CAGTGAGTAAAGCCTCTTAACTTAATCATATCTTTAATCAATAACCTTTGTTGGATTCAGTGTTCGCTGCCGGTC
TGTATAACCTCATCCTCGTTTGTCAGCGATGAAATGCTTATATCTATTCCACTTGCCTGTAGAACCGGTTACAAT
TGTAAGCCTGGTCTCTCATGGCTGGTGTATTGAGGTCCTGACTGGTGTTAGGTTGCGATCTCTATGCCTATCCAG
CTATTTTTCGCCTGGAGAATTTTTCGTCTCACGAAAATGACGGTCATTCCTGTTATCGTTTCGCTACTATCATTC
GTTTCTTTTGGTACGTCCGCTGAGCTCTTTTCATCTGCAATCGCTAACTTTACCCCTCCTTAAAGCTGGCGGTAT
ATGGACAACTGTTAAGATCATAATGATCAAATCTTTCAGCCGCAAACCCGAACTTCACTGGTCGGCTCTTGTATG
GTTTCTCTCAGCATGCGTCGCCGATGTTCTTATCACTTTAACGCTTGTATTAAACTTGGTGAGTTATCCCGATGC
TATGGACCCTATCCTCGTACCACTGTATTGATCATGGTTTGCACATGATTCGTAGTCGAGACGTAAGACAGGATT
TTCCGCGACAGACGACGTTATTTCGAAAATAATCCGAAGTAGGTTCTTGGTTACATTGCTTCGCAACTGTCACTC
ATCATTCATCCAAGTGACGGTCCAGACTGGATTCTTAACGTAGGTCTTTTGACACGCCCATTATTTTTAGAACTT
CAATTGAGTCTTTCTAACAGTGCTCTTTTCGCAATCGGGGATGTTGTATTTTTCATGAGTGAGCTCTATCCTTTT
TTGTAGAAGTACCCGACGTTGATTTGTTTCATCTAGCTCTCGGAGTACGTCAATTCATGGCGTTGTAGCACATGT
GTGTTCTGAATTTGTTCTTTGACGGACATAGAAAACGGCTTTGTGCGTCCAATCATTCGTTTGACGTCTCTTCGC
ATGGGCTGATTTCCGAGACAGGAACTTCCTCTGGGATTTAGCTCTCACTAAAATTTACGCGAATTGCCTAATGTC
CACTTTGAATGCCCGGGCTGCTTTGAAGGAAATGTCAAGCAGTAATCATTCAAACACGCGCCCTTTCTCAACTAT
GGTTGGGGCTAGTAGACGACCTGTGCGCTCTCACCATATTCTCTGTCCTGTTATCCGCATCTAACTGTTTTCTAG
CACACTGGTACAGACCACATTCCACCAGTAAGTTCAATAGTGATAAAGTCTCACCGGCGCTGATGCAACGTCTTG
TACCCACGTTCAGTCGCATATGTTAGAACTAGCGCGAGTGTCATACGAGAGGTCACGATCACAGATAGATGACCC
TGAGTACGGCATCACAGTAACAAAGGCACGTCTTTGATTTGTCCCGTCATTCAATGAGAATCAACGTATTATATA
GGTCGTGGAAACCATGCAGGATGAGGAGTCATTTCACCCAAAAGGTGCCGCTCTTTAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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