Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|020230
Gene name
Locationscaffold_10:1381009..1381698
Strand+
Gene length (bp)689
Transcript length (bp)519
Coding sequence length (bp)519
Protein length (aa) 173

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF12296 HsbA Hydrophobic surface binding protein A 2.5E-28 22 143

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
Yes 1 - 19 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|020230
MQLKSLIFLGSAFTLVFGATTQDVLNDINTLRTRLNTLDSDLHSFSGGILDALAIHNAATSVQSATDDTTSDVQD
VPTPISEADAQSILDAITGIAPIIEDSLTTIVAKKSDFESVPLGGISIARGDLNNLAGSTSNLEDALIASTPADL
LDEANAIRNEIDAAFAAAIAAF*
Coding >AgabiH97|020230
ATGCAACTCAAGTCTCTTATCTTTCTTGGTTCCGCGTTCACTCTTGTCTTCGGAGCAACCACTCAAGATGTTTTG
AACGATATCAATACCCTCAGGACTCGTCTGAACACCTTGGATAGTGACCTCCATAGCTTTTCGGGTGGCATATTA
GATGCCTTGGCCATCCATAACGCTGCTACCAGTGTTCAATCCGCCACTGATGACACGACTAGCGATGTACAGGAT
GTTCCAACTCCCATTTCTGAAGCTGATGCTCAAAGCATTCTTGATGCTATCACTGGGATAGCACCCATTATTGAA
GATTCGCTCACGACAATCGTAGCCAAGAAGTCCGATTTCGAGTCTGTCCCCCTCGGTGGTATCAGCATCGCCAGG
GGTGATCTTAACAATCTTGCCGGGAGTACTTCTAACCTTGAGGATGCTCTTATTGCATCTACTCCTGCTGATTTA
CTTGATGAAGCCAATGCTATCAGGAATGAGATTGATGCTGCCTTTGCTGCTGCTATCGCAGCTTTTTAG
Transcript >AgabiH97|020230
ATGCAACTCAAGTCTCTTATCTTTCTTGGTTCCGCGTTCACTCTTGTCTTCGGAGCAACCACTCAAGATGTTTTG
AACGATATCAATACCCTCAGGACTCGTCTGAACACCTTGGATAGTGACCTCCATAGCTTTTCGGGTGGCATATTA
GATGCCTTGGCCATCCATAACGCTGCTACCAGTGTTCAATCCGCCACTGATGACACGACTAGCGATGTACAGGAT
GTTCCAACTCCCATTTCTGAAGCTGATGCTCAAAGCATTCTTGATGCTATCACTGGGATAGCACCCATTATTGAA
GATTCGCTCACGACAATCGTAGCCAAGAAGTCCGATTTCGAGTCTGTCCCCCTCGGTGGTATCAGCATCGCCAGG
GGTGATCTTAACAATCTTGCCGGGAGTACTTCTAACCTTGAGGATGCTCTTATTGCATCTACTCCTGCTGATTTA
CTTGATGAAGCCAATGCTATCAGGAATGAGATTGATGCTGCCTTTGCTGCTGCTATCGCAGCTTTTTAG
Gene >AgabiH97|020230
ATGCAACTCAAGTCTCTTATCTTTCTTGGTTCCGCGTTCACTCTTGTCTTCGGAGCAACCACTCAAGATGTTTTG
AACGATATCAATACCCTCAGGACTCGTCTGAACACCTTGGATAGTGACCTCCATAGCTTTTCGGGTGGCATATTA
GATGCCTTGGTTAGTTTTCCATTCTGATGAGAAAATCTGTACTTGATTAAGCGATTATTAGGCCATCCATAACGC
TGCTACCAGTGTTCAATCCGCCACTGATGACACGACTAGCGATGTACAGGTGAGCTTGTTTTGCACTATCAGTGT
TATTGCTGTAATCCGTTTCATTGACACGAGCAAGGATGTTCCAACTCCCATTTCTGAAGCTGATGCTCAAAGCAT
TCTTGATGCTATCACTGGGATAGCACCCATTATTGAAGATTCGCTCACGACAATCGTAGCCAAGAAGTCCGATTT
CGAGTCTGTCCCCCTCGGTGGTATCAGCATCGCCAGGGGTGATCTTAACAATCTTGCCGGGAGTACTTCTAACCT
TGAGGATGCTCTTATTGCATCTACTCCTGTAAGTCATCCTGCGCTGCGGTTTCTCAGTCTTTCGCTAAGCATTAC
GTTTTTCCTAGGCTGATTTACTTGATGAAGCCAATGCTATCAGGAATGAGATTGATGCTGCCTTTGCTGCTGCTA
TCGCAGCTTTTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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