Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|020210
Gene name
Locationscaffold_10:1375620..1376752
Strand+
Gene length (bp)1132
Transcript length (bp)855
Coding sequence length (bp)855
Protein length (aa) 285

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Golgi apparatus Signal peptide|Transmembrane domain 0.104 0.0722 0.1311 0.3735 0.1395 0.003 0.0695 0.215 0.3761 0.0085

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 10 32 22
2 53 72 19
3 92 113 21
4 115 137 22
5 141 163 22
6 195 215 20
7 220 242 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Orthologs

Orthofinder run ID1
Orthogroup1245
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|019720
Agaricus bisporus var bisporus H39 AgabiH39|019730
Agaricus bisporus var bisporus H39 AgabiH39|019740
Agaricus bisporus var bisporus H39 AgabiH39|019750
Agaricus bisporus var bisporus H39 AgabiH39|019950
Agaricus bisporus var bisporus H39 AgabiH39|020020
Agaricus bisporus var bisporus H39 AgabiH39|479900
Agaricus bisporus var bisporus H39 AgabiH39|539400
Agaricus bisporus var bisporus H97 AgabiH97|019720
Agaricus bisporus var bisporus H97 AgabiH97|019730
Agaricus bisporus var bisporus H97 AgabiH97|019740
Agaricus bisporus var bisporus H97 AgabiH97|019750
Agaricus bisporus var bisporus H97 AgabiH97|019950
Agaricus bisporus var bisporus H97 AgabiH97|020020
Agaricus bisporus var bisporus H97 AgabiH97|020210 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|034710

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|020210
MDYAPPGGRSLALVIGSILYGLNSVTVWLSLERLFRERSHWKRSRDINLPMTAVVILLFMASTTYLALQVALEMR
DLPQSRPGDFQMERSRIMVAQALLLVLETIIADSVLLFRCWVIWNKTFFVILLPLVLWVGWGKFYAAIAAFWTCT
IIVNVYCTGSIVGRICSVQQGWRPPSICSLQDLPQRDRMQLAKRIVVESAMMYTVSSLSAFISLICPVSVAIDIT
CLAEAQIIGIAFNLILIRPWSQNQDHESELYVRGEKPKTNRAMVSVAVGTTDSLVDDIP*
Coding >AgabiH97|020210
ATGGATTATGCTCCTCCCGGGGGCCGATCACTGGCGCTCGTGATTGGATCCATATTATATGGTCTGAACTCGGTT
ACGGTTTGGTTAAGTCTCGAGCGTCTTTTCAGAGAGAGAAGCCACTGGAAACGCAGTCGGGACATTAATCTCCCT
ATGACAGCGGTTGTTATCTTACTCTTTATGGCCTCCACGACGTACTTGGCACTTCAAGTTGCTCTTGAAATGCGG
GATTTGCCACAGTCTCGTCCAGGGGACTTTCAGATGGAGCGCAGTAGGATCATGGTTGCACAAGCTCTCCTGTTG
GTGCTTGAGACGATTATTGCTGATAGTGTCTTGCTCTTCAGGTGCTGGGTCATCTGGAATAAGACTTTCTTTGTC
ATACTCTTACCCCTGGTTCTTTGGGTAGGATGGGGAAAGTTTTATGCAGCCATCGCGGCGTTCTGGACTTGCACA
ATCATAGTGAATGTTTACTGTACGGGATCGATTGTAGGGAGAATTTGTTCCGTGCAACAGGGTTGGAGACCGCCC
TCCATATGTTCTTTACAGGATCTACCGCAACGAGATCGAATGCAACTTGCCAAACGTATAGTCGTCGAGTCCGCA
ATGATGTACACCGTGTCATCTTTGAGTGCCTTTATCAGTCTTATCTGCCCAGTGAGCGTCGCAATTGACATTACA
TGTCTAGCAGAAGCTCAAATTATCGGAATTGCCTTTAATTTGATACTTATCAGACCCTGGTCTCAAAACCAGGAC
CATGAAAGCGAGTTATACGTCAGAGGTGAAAAACCGAAGACGAACCGCGCGATGGTTAGCGTGGCGGTAGGAACC
ACGGACTCATTGGTTGATGATATACCGTAA
Transcript >AgabiH97|020210
ATGGATTATGCTCCTCCCGGGGGCCGATCACTGGCGCTCGTGATTGGATCCATATTATATGGTCTGAACTCGGTT
ACGGTTTGGTTAAGTCTCGAGCGTCTTTTCAGAGAGAGAAGCCACTGGAAACGCAGTCGGGACATTAATCTCCCT
ATGACAGCGGTTGTTATCTTACTCTTTATGGCCTCCACGACGTACTTGGCACTTCAAGTTGCTCTTGAAATGCGG
GATTTGCCACAGTCTCGTCCAGGGGACTTTCAGATGGAGCGCAGTAGGATCATGGTTGCACAAGCTCTCCTGTTG
GTGCTTGAGACGATTATTGCTGATAGTGTCTTGCTCTTCAGGTGCTGGGTCATCTGGAATAAGACTTTCTTTGTC
ATACTCTTACCCCTGGTTCTTTGGGTAGGATGGGGAAAGTTTTATGCAGCCATCGCGGCGTTCTGGACTTGCACA
ATCATAGTGAATGTTTACTGTACGGGATCGATTGTAGGGAGAATTTGTTCCGTGCAACAGGGTTGGAGACCGCCC
TCCATATGTTCTTTACAGGATCTACCGCAACGAGATCGAATGCAACTTGCCAAACGTATAGTCGTCGAGTCCGCA
ATGATGTACACCGTGTCATCTTTGAGTGCCTTTATCAGTCTTATCTGCCCAGTGAGCGTCGCAATTGACATTACA
TGTCTAGCAGAAGCTCAAATTATCGGAATTGCCTTTAATTTGATACTTATCAGACCCTGGTCTCAAAACCAGGAC
CATGAAAGCGAGTTATACGTCAGAGGTGAAAAACCGAAGACGAACCGCGCGATGGTTAGCGTGGCGGTAGGAACC
ACGGACTCATTGGTTGATGATATACCGTAA
Gene >AgabiH97|020210
ATGGATTATGCTCCTCCCGGGGGCCGATCACTGGCGCTCGTGATTGGATCCATATTATATGGTCTGAACTCGGTT
ACGGTTTGGTTAAGTCTCGAGCGTCTTTTCAGAGAGAGAAGCCACTGGAAACGCAGTCGGGACATTAATCTCCCT
ATGACAGCGGTTGTTATCTTACTCTTTATGGCCTCCACGACGTACTTGGCACTTCAAGTTGCTCTTGAAATGCGG
GATTTGCCACAGTCTCGTCCAGGGGACTTTCAGATGGAGCGCAGTAGGATCATGGTTGCACAAGTATGCCCTCCT
ATATTCTTTTTTCCCCGGCTGTGAGCATTAATGTCCGGTCGTTCGTAGGCTCTCCTGTTGGTGCTTGAGACGATT
ATTGCTGATAGTGTCTTGGTAAGATGTTGAAGGAATGCGTTTAGGGAAAATCTGACAATTGGGCTGGTGAATCAA
GCTCTTCAGGTGCTGGGTCATCTGGAATAAGACTTTCTTTGTCATACTCTTACCCCTGGTTCTTTGGGTAGGATG
TCTGTGTTCTAGTGGCTACGCTAGCTATTGTTTATATCGGACCTTACTGGACCCAGGGGGAAAGTTTTATGCAGC
CATCGCGGCGTTCTGGACTTGCACAATCATAGTGAATGTTTACTGTACGGGTAAGCCACTTATTTCGGAAATATA
CCATTCAAAGCCATATACAATTTTTCAGGATCGATTGTAGGGAGAATTTGTTCCGTGCAACAGGGTTGGAGACCG
CCCTCCATATGTTCTTTACAGGATCTACCGCAACGAGATCGAATGCAACTTGCCAAACGTATAGTCGTCGAGTCC
GCAATGATGTACACCGTGTCATCTTTGAGTGCCTTTATCAGTCTTATCTGCCCAGTGAGCGTCGCAATTGACATT
ACATGTCTAGCAGTAAGTCACTCGACTTTAGGACCGATTACTTTCTTATTATGTTAAGCAGGAAGCTCAAATTAT
CGGAATTGCCTTTAATTTGATACTTATCAGACCCTGGTCTCAAAACCAGGACCATGAAAGCGAGTTATACGTCAG
AGGTGAAAAACCGAAGACGAACCGCGCGATGGTTAGCGTGGCGGTAGGAACCACGGACTCATTGGTTGATGATAT
ACCGTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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