Protein ID | AgabiH97|020120 |
Gene name | |
Location | scaffold_10:1351974..1353422 |
Strand | + |
Gene length (bp) | 1448 |
Transcript length (bp) | 1332 |
Coding sequence length (bp) | 1332 |
Protein length (aa) | 444 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01053 | Cys_Met_Meta_PP | Cys/Met metabolism PLP-dependent enzyme | 2.8E-88 | 32 | 327 |
PF01053 | Cys_Met_Meta_PP | Cys/Met metabolism PLP-dependent enzyme | 4.3E-29 | 352 | 437 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q60HG7|CGL_MACFA | Cystathionine gamma-lyase OS=Macaca fascicularis GN=CTH PE=2 SV=1 | 26 | 439 | 4.0E-130 |
sp|Q19QT7|CGL_PIG | Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=2 SV=1 | 28 | 439 | 1.0E-126 |
sp|P31373|CYS3_YEAST | Cystathionine gamma-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYS3 PE=1 SV=2 | 27 | 439 | 1.0E-123 |
sp|Q55DV9|CGL_DICDI | Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=1 SV=1 | 32 | 439 | 2.0E-123 |
sp|Q8VCN5|CGL_MOUSE | Cystathionine gamma-lyase OS=Mus musculus GN=Cth PE=1 SV=1 | 30 | 439 | 8.0E-123 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|Q60HG7|CGL_MACFA | Cystathionine gamma-lyase OS=Macaca fascicularis GN=CTH PE=2 SV=1 | 26 | 439 | 4.0E-130 |
sp|Q19QT7|CGL_PIG | Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=2 SV=1 | 28 | 439 | 1.0E-126 |
sp|P31373|CYS3_YEAST | Cystathionine gamma-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYS3 PE=1 SV=2 | 27 | 439 | 1.0E-123 |
sp|Q55DV9|CGL_DICDI | Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=1 SV=1 | 32 | 439 | 2.0E-123 |
sp|Q8VCN5|CGL_MOUSE | Cystathionine gamma-lyase OS=Mus musculus GN=Cth PE=1 SV=1 | 30 | 439 | 8.0E-123 |
sp|P18757|CGL_RAT | Cystathionine gamma-lyase OS=Rattus norvegicus GN=Cth PE=1 SV=2 | 30 | 439 | 3.0E-121 |
sp|Q58DW2|CGL_BOVIN | Cystathionine gamma-lyase OS=Bos taurus GN=CTH PE=2 SV=1 | 30 | 421 | 1.0E-120 |
sp|P32929|CGL_HUMAN | Cystathionine gamma-lyase OS=Homo sapiens GN=CTH PE=1 SV=3 | 26 | 439 | 4.0E-120 |
sp|P55216|CGL2_CAEEL | Putative cystathionine gamma-lyase 2 OS=Caenorhabditis elegans GN=cth-2 PE=3 SV=1 | 30 | 443 | 4.0E-119 |
sp|Q83A83|METC_COXBU | Cystathionine beta-lyase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=metC PE=1 SV=1 | 23 | 436 | 2.0E-116 |
sp|Q1M0P5|METB_HELPX | Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1 | 30 | 438 | 4.0E-111 |
sp|A2RM21|METC_LACLM | Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1 | 32 | 438 | 1.0E-110 |
sp|P0A4K2|METC_LACLA | Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1 | 32 | 438 | 1.0E-110 |
sp|P56069|METB_HELPY | Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=1 SV=1 | 30 | 438 | 2.0E-110 |
sp|Q9ZMW7|METB_HELPJ | Cystathionine gamma-synthase OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=metB PE=3 SV=1 | 30 | 438 | 3.0E-108 |
sp|P0C2T9|METC_LACLC | Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1 | 30 | 438 | 7.0E-107 |
sp|O05394|MCCB_BACSU | Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1 | 32 | 437 | 5.0E-103 |
sp|P46807|METB_MYCLE | Cystathionine gamma-synthase OS=Mycobacterium leprae (strain TN) GN=metB PE=3 SV=1 | 29 | 436 | 8.0E-94 |
sp|P9WGB7|METB_MYCTU | Cystathionine gamma-synthase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=metB PE=1 SV=1 | 29 | 436 | 5.0E-93 |
sp|P9WGB6|METB_MYCTO | Cystathionine gamma-synthase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=metB PE=3 SV=1 | 29 | 436 | 5.0E-93 |
sp|P66876|METB_MYCBO | Cystathionine gamma-synthase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=metB PE=3 SV=1 | 29 | 436 | 5.0E-93 |
sp|P24601|METB_HERAU | Probable cystathionine gamma-synthase (Fragment) OS=Herpetosiphon aurantiacus GN=metB PE=3 SV=1 | 29 | 376 | 6.0E-91 |
sp|O31632|METC_BACSU | Cystathionine beta-lyase MetC OS=Bacillus subtilis (strain 168) GN=metC PE=1 SV=1 | 26 | 440 | 1.0E-83 |
sp|P13254|MEGL_PSEPU | Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2 | 29 | 440 | 3.0E-79 |
sp|P44502|METB_HAEIN | Cystathionine gamma-synthase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=metB PE=3 SV=1 | 36 | 436 | 5.0E-79 |
sp|O31631|METI_BACSU | Cystathionine gamma-synthase/O-acetylhomoserine (thiol)-lyase OS=Bacillus subtilis (strain 168) GN=metI PE=1 SV=1 | 27 | 436 | 2.0E-77 |
sp|P00935|METB_ECOLI | Cystathionine gamma-synthase OS=Escherichia coli (strain K12) GN=metB PE=1 SV=1 | 31 | 432 | 1.0E-74 |
sp|P53780|METC_ARATH | Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1 | 3 | 432 | 2.0E-67 |
sp|Q1K8G0|CBL_NEUCR | Cystathionine beta-lyase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=met-2 PE=1 SV=1 | 37 | 439 | 3.0E-57 |
sp|P55217|CGS1_ARATH | Cystathionine gamma-synthase 1, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=1 SV=3 | 69 | 437 | 1.0E-56 |
sp|O94350|CBL_SCHPO | Cystathionine beta-lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=str3 PE=3 SV=4 | 32 | 442 | 4.0E-52 |
sp|Q9C876|CGS2_ARATH | Probable cystathionine gamma-synthase 2 OS=Arabidopsis thaliana GN=CGS2 PE=3 SV=1 | 69 | 437 | 4.0E-51 |
sp|P55218|METZ_PSEAE | O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=metZ PE=1 SV=1 | 68 | 436 | 4.0E-49 |
sp|P53101|STR3_YEAST | Cystathionine beta-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STR3 PE=1 SV=1 | 30 | 439 | 3.0E-48 |
sp|O13326|CYSD_SCHPO | O-acetylhomoserine (thiol)-lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC428.11 PE=2 SV=1 | 27 | 439 | 3.0E-43 |
sp|Q59829|CYSA_STRCO | Putative cystathionine gamma-lyase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=cysA PE=3 SV=2 | 19 | 438 | 3.0E-40 |
sp|P9WGB5|METZ_MYCTU | O-succinylhomoserine sulfhydrylase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=metZ PE=1 SV=1 | 69 | 436 | 4.0E-39 |
sp|P9WGB4|METZ_MYCTO | O-succinylhomoserine sulfhydrylase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=metZ PE=3 SV=1 | 69 | 436 | 4.0E-39 |
sp|Q07703|METC_BORAV | Cystathionine beta-lyase OS=Bordetella avium GN=metC PE=1 SV=3 | 36 | 440 | 6.0E-39 |
sp|Q92441|MET17_KLULA | Protein MET17 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MET17 PE=3 SV=3 | 30 | 431 | 2.0E-38 |
sp|P50125|CYSD_EMENI | O-acetylhomoserine (thiol)-lyase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cysD PE=2 SV=2 | 30 | 436 | 3.0E-34 |
sp|Q52811|METC_RHIL3 | Putative cystathionine beta-lyase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=metC PE=3 SV=2 | 29 | 440 | 5.0E-34 |
sp|P06106|MET17_YEAST | Protein MET17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MET17 PE=1 SV=3 | 30 | 437 | 1.0E-32 |
sp|P06721|METC_ECOLI | Cystathionine beta-lyase MetC OS=Escherichia coli (strain K12) GN=metC PE=1 SV=1 | 30 | 432 | 1.0E-31 |
sp|P44527|METC_HAEIN | Cystathionine beta-lyase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=metC PE=3 SV=1 | 30 | 440 | 3.0E-31 |
sp|Q9SGU9|MGL_ARATH | Methionine gamma-lyase OS=Arabidopsis thaliana GN=MGL PE=1 SV=1 | 69 | 421 | 9.0E-31 |
sp|P18949|METC_SALTY | Cystathionine beta-lyase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=metC PE=3 SV=2 | 71 | 432 | 9.0E-28 |
sp|P43623|METC_YEAST | Putative cystathionine beta-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRC7 PE=1 SV=1 | 29 | 385 | 4.0E-25 |
sp|P38716|YHR2_YEAST | Uncharacterized trans-sulfuration enzyme YHR112C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR112C PE=1 SV=1 | 30 | 438 | 6.0E-22 |
sp|O42851|YFHE_SCHPO | Uncharacterized trans-sulfuration enzyme C23A1.14c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23A1.14c PE=2 SV=1 | 30 | 432 | 3.0E-19 |
sp|P47164|MET7_YEAST | Cystathionine gamma-synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STR2 PE=1 SV=1 | 141 | 442 | 1.0E-11 |
sp|O74314|MET7_SCHPO | Probable cystathionine gamma-synthase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15D4.09c PE=3 SV=1 | 97 | 436 | 8.0E-07 |
sp|Q04533|METX_YEAST | Putative cystathionine gamma-synthase YML082W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YML082W PE=1 SV=1 | 141 | 440 | 8.0E-06 |
GO Term | Description | Terminal node |
---|---|---|
GO:0030170 | pyridoxal phosphate binding | Yes |
GO:0019346 | transsulfuration | Yes |
GO:0044281 | small molecule metabolic process | No |
GO:0019842 | vitamin binding | No |
GO:0036094 | small molecule binding | No |
GO:1901605 | alpha-amino acid metabolic process | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0006790 | sulfur compound metabolic process | No |
GO:0005488 | binding | No |
GO:0070279 | vitamin B6 binding | No |
GO:0043167 | ion binding | No |
GO:0006520 | cellular amino acid metabolic process | No |
GO:1901564 | organonitrogen compound metabolic process | No |
GO:0071704 | organic substance metabolic process | No |
GO:0008150 | biological_process | No |
GO:0043168 | anion binding | No |
GO:0009069 | serine family amino acid metabolic process | No |
GO:0044237 | cellular metabolic process | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0009092 | homoserine metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0000096 | sulfur amino acid metabolic process | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0003674 | molecular_function | No |
GO:0043436 | oxoacid metabolic process | No |
GO:0050667 | homocysteine metabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:0019752 | carboxylic acid metabolic process | No |
GO:0006082 | organic acid metabolic process | No |
GO:0006534 | cysteine metabolic process | No |
GO:0009987 | cellular process | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 70 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Casing | Casing mycelium | 92.72 | 51.80 | 133.65 |
Initials | Initials knots | 96.03 | 56.02 | 136.03 |
Pileal_Stipeal_center | Stage I stipe center | 40.63 | 21.86 | 59.41 |
Pileal_Stipeal_shell | Stage I stipe shell | 16.43 | 8.62 | 24.24 |
DIF_stipe_center | Stage II stipe center | 12.75 | 6.44 | 19.06 |
DIF_stipe_shell | Stage II stipe shell | 12.62 | 6.41 | 18.84 |
DIF_stipe_skin | Stage II stipe skin | 23.76 | 12.75 | 34.77 |
DIF_cap_skin | Stage II cap skin | 14.27 | 7.34 | 21.19 |
DIF_cap_tissue | Stage II cap tissue | 11.55 | 5.79 | 17.32 |
DIF_gill_tissue | Stage II gill tissue | 12.52 | 6.27 | 18.77 |
YFB_stipe_center | Young fruiting body stipe center | 22.69 | 11.25 | 34.13 |
YFB_stipe_shell | Young fruiting body stipe shell | 9.76 | 4.76 | 14.76 |
YFB_stipe_skin | Young fruiting body stipe skin | 16.39 | 8.46 | 24.31 |
YFB_cap_skin | Young fruiting body cap skin | 20.56 | 11.11 | 30.01 |
YFB_cap_tissue | Young fruiting body cap tissue | 8.77 | 4.23 | 13.31 |
YFB_gill_tissue | Young fruiting body gill tissue | 21.99 | 11.19 | 32.78 |
YFB_veil | Young fruiting body veil | 8.92 | 4.30 | 13.54 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Casing | DIF_gill_tissue | 0.000613 | yes |
Casing | YFB_stipe_center | 0.000613 | yes |
Casing | YFB_stipe_shell | 0.000613 | yes |
Casing | YFB_stipe_skin | 0.000613 | yes |
Casing | YFB_cap_skin | 0.000613 | yes |
Casing | YFB_cap_tissue | 0.000613 | yes |
Casing | YFB_gill_tissue | 0.000613 | yes |
Casing | YFB_veil | 0.000613 | yes |
Casing | Initials | 0.952205 | no |
Casing | Pileal_Stipeal_center | 0.002525 | yes |
Casing | Pileal_Stipeal_shell | 0.000613 | yes |
Casing | DIF_stipe_center | 0.000613 | yes |
Casing | DIF_stipe_shell | 0.000613 | yes |
Casing | DIF_stipe_skin | 0.000613 | yes |
Casing | DIF_cap_skin | 0.000613 | yes |
Casing | DIF_cap_tissue | 0.000613 | yes |
DIF_gill_tissue | YFB_stipe_center | 0.092330 | no |
DIF_gill_tissue | YFB_stipe_shell | 0.604699 | no |
DIF_gill_tissue | YFB_stipe_skin | 0.556928 | no |
DIF_gill_tissue | YFB_cap_skin | 0.150574 | no |
DIF_gill_tissue | YFB_cap_tissue | 0.406919 | no |
DIF_gill_tissue | YFB_gill_tissue | 0.103634 | no |
DIF_gill_tissue | YFB_veil | 0.435788 | no |
YFB_stipe_center | YFB_stipe_shell | 0.011041 | yes |
YFB_stipe_center | YFB_stipe_skin | 0.440393 | no |
YFB_stipe_center | YFB_cap_skin | 0.865676 | no |
YFB_stipe_center | YFB_cap_tissue | 0.002951 | yes |
YFB_stipe_center | YFB_gill_tissue | 0.963655 | no |
YFB_stipe_center | YFB_veil | 0.003765 | yes |
YFB_stipe_shell | YFB_stipe_skin | 0.159459 | no |
YFB_stipe_shell | YFB_cap_skin | 0.019169 | yes |
YFB_stipe_shell | YFB_cap_tissue | 0.866473 | no |
YFB_stipe_shell | YFB_gill_tissue | 0.013782 | yes |
YFB_stipe_shell | YFB_veil | 0.888534 | no |
YFB_stipe_skin | YFB_cap_skin | 0.620938 | no |
YFB_stipe_skin | YFB_cap_tissue | 0.071041 | no |
YFB_stipe_skin | YFB_gill_tissue | 0.494303 | no |
YFB_stipe_skin | YFB_veil | 0.082455 | no |
YFB_cap_skin | YFB_cap_tissue | 0.007092 | yes |
YFB_cap_skin | YFB_gill_tissue | 0.912615 | no |
YFB_cap_skin | YFB_veil | 0.008121 | yes |
YFB_cap_tissue | YFB_gill_tissue | 0.004928 | yes |
YFB_cap_tissue | YFB_veil | 0.981247 | no |
YFB_gill_tissue | YFB_veil | 0.003765 | yes |
Initials | DIF_gill_tissue | 0.000613 | yes |
Initials | YFB_stipe_center | 0.000613 | yes |
Initials | YFB_stipe_shell | 0.000613 | yes |
Initials | YFB_stipe_skin | 0.000613 | yes |
Initials | YFB_cap_skin | 0.000613 | yes |
Initials | YFB_cap_tissue | 0.000613 | yes |
Initials | YFB_gill_tissue | 0.000613 | yes |
Initials | YFB_veil | 0.000613 | yes |
Initials | Pileal_Stipeal_center | 0.001625 | yes |
Initials | Pileal_Stipeal_shell | 0.000613 | yes |
Initials | DIF_stipe_center | 0.000613 | yes |
Initials | DIF_stipe_shell | 0.000613 | yes |
Initials | DIF_stipe_skin | 0.000613 | yes |
Initials | DIF_cap_skin | 0.000613 | yes |
Initials | DIF_cap_tissue | 0.000613 | yes |
Pileal_Stipeal_center | DIF_gill_tissue | 0.000613 | yes |
Pileal_Stipeal_center | YFB_stipe_center | 0.086750 | no |
Pileal_Stipeal_center | YFB_stipe_shell | 0.000613 | yes |
Pileal_Stipeal_center | YFB_stipe_skin | 0.003365 | yes |
Pileal_Stipeal_center | YFB_cap_skin | 0.022111 | yes |
Pileal_Stipeal_center | YFB_cap_tissue | 0.000613 | yes |
Pileal_Stipeal_center | YFB_gill_tissue | 0.054375 | no |
Pileal_Stipeal_center | YFB_veil | 0.000613 | yes |
Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.000613 | yes |
Pileal_Stipeal_center | DIF_stipe_center | 0.000613 | yes |
Pileal_Stipeal_center | DIF_stipe_shell | 0.000613 | yes |
Pileal_Stipeal_center | DIF_stipe_skin | 0.092330 | no |
Pileal_Stipeal_center | DIF_cap_skin | 0.000613 | yes |
Pileal_Stipeal_center | DIF_cap_tissue | 0.000613 | yes |
Pileal_Stipeal_shell | DIF_gill_tissue | 0.534557 | no |
Pileal_Stipeal_shell | YFB_stipe_center | 0.435221 | no |
Pileal_Stipeal_shell | YFB_stipe_shell | 0.140276 | no |
Pileal_Stipeal_shell | YFB_stipe_skin | 0.996384 | no |
Pileal_Stipeal_shell | YFB_cap_skin | 0.608546 | no |
Pileal_Stipeal_shell | YFB_cap_tissue | 0.062995 | no |
Pileal_Stipeal_shell | YFB_gill_tissue | 0.482998 | no |
Pileal_Stipeal_shell | YFB_veil | 0.073401 | no |
Pileal_Stipeal_shell | DIF_stipe_center | 0.572868 | no |
Pileal_Stipeal_shell | DIF_stipe_shell | 0.537876 | no |
Pileal_Stipeal_shell | DIF_stipe_skin | 0.316421 | no |
Pileal_Stipeal_shell | DIF_cap_skin | 0.788165 | no |
Pileal_Stipeal_shell | DIF_cap_tissue | 0.373427 | no |
DIF_stipe_center | DIF_gill_tissue | 0.978769 | no |
DIF_stipe_center | YFB_stipe_center | 0.105226 | no |
DIF_stipe_center | YFB_stipe_shell | 0.559836 | no |
DIF_stipe_center | YFB_stipe_skin | 0.581702 | no |
DIF_stipe_center | YFB_cap_skin | 0.171403 | no |
DIF_stipe_center | YFB_cap_tissue | 0.364430 | no |
DIF_stipe_center | YFB_gill_tissue | 0.117477 | no |
DIF_stipe_center | YFB_veil | 0.394653 | no |
DIF_stipe_center | DIF_stipe_shell | 0.987140 | no |
DIF_stipe_center | DIF_stipe_skin | 0.052745 | no |
DIF_stipe_center | DIF_cap_skin | 0.847649 | no |
DIF_stipe_center | DIF_cap_tissue | 0.873485 | no |
DIF_stipe_shell | DIF_gill_tissue | 0.989882 | no |
DIF_stipe_shell | YFB_stipe_center | 0.090997 | no |
DIF_stipe_shell | YFB_stipe_shell | 0.574135 | no |
DIF_stipe_shell | YFB_stipe_skin | 0.556357 | no |
DIF_stipe_shell | YFB_cap_skin | 0.148373 | no |
DIF_stipe_shell | YFB_cap_tissue | 0.367818 | no |
DIF_stipe_shell | YFB_gill_tissue | 0.102511 | no |
DIF_stipe_shell | YFB_veil | 0.400686 | no |
DIF_stipe_shell | DIF_stipe_skin | 0.043339 | yes |
DIF_stipe_shell | DIF_cap_skin | 0.824881 | no |
DIF_stipe_shell | DIF_cap_tissue | 0.885026 | no |
DIF_stipe_skin | DIF_gill_tissue | 0.055779 | no |
DIF_stipe_skin | YFB_stipe_center | 0.946120 | no |
DIF_stipe_skin | YFB_stipe_shell | 0.005302 | yes |
DIF_stipe_skin | YFB_stipe_skin | 0.329316 | no |
DIF_stipe_skin | YFB_cap_skin | 0.777121 | no |
DIF_stipe_skin | YFB_cap_tissue | 0.001140 | yes |
DIF_stipe_skin | YFB_gill_tissue | 0.901743 | no |
DIF_stipe_skin | YFB_veil | 0.001625 | yes |
DIF_stipe_skin | DIF_cap_skin | 0.138008 | no |
DIF_stipe_skin | DIF_cap_tissue | 0.023153 | yes |
DIF_cap_skin | DIF_gill_tissue | 0.819146 | no |
DIF_cap_skin | YFB_stipe_center | 0.215847 | no |
DIF_cap_skin | YFB_stipe_shell | 0.344220 | no |
DIF_cap_skin | YFB_stipe_skin | 0.801029 | no |
DIF_cap_skin | YFB_cap_skin | 0.332191 | no |
DIF_cap_skin | YFB_cap_tissue | 0.195079 | no |
DIF_cap_skin | YFB_gill_tissue | 0.242768 | no |
DIF_cap_skin | YFB_veil | 0.212706 | no |
DIF_cap_skin | DIF_cap_tissue | 0.665936 | no |
DIF_cap_tissue | DIF_gill_tissue | 0.900270 | no |
DIF_cap_tissue | YFB_stipe_center | 0.051932 | no |
DIF_cap_tissue | YFB_stipe_shell | 0.755490 | no |
DIF_cap_tissue | YFB_stipe_skin | 0.390170 | no |
DIF_cap_tissue | YFB_cap_skin | 0.081756 | no |
DIF_cap_tissue | YFB_cap_tissue | 0.557090 | no |
DIF_cap_tissue | YFB_gill_tissue | 0.049467 | yes |
DIF_cap_tissue | YFB_veil | 0.588047 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|020120 MSPGLDVHQFSNSNGLRVNGSVKKSHSEGFSTRAIHVGSEPNAETGAVIPAISLSTTYKQDAVGVHKGYEYSRSS NPNRDALERTLASLEVGGGHGLAFASGSATTATVLQLFGTGAHIISVNDVYGGTFRYMSRVATENQGLETTFLDL ETLSEDGHELLDKIRDNTKLIWIESPTNPTLRLISVESIRAHISKLTNPPLILVDNTFLSPFYSSPLLLGADIVM HSLTKYVNGHSDVVMGALILPNTPFHTELANKLRFLQNAIGAIPSSYDSWLAQRGAKTLALRMKAHGTNALSVAR ALKSSPLVEDVIYPGLASHRRHDIAWESLSPHARKWIQSLPGNLSEQTDFPYSGMISFRIKGGFEAAEKFLTSTK LFTLAESLGGVESLAEHPAKMTHGSIPPDEREKLGISDGLIRLSVGVEEEEDLVEDVLQALEKAAGKL* |
Coding | >AgabiH97|020120 ATGTCTCCAGGACTCGACGTACACCAGTTTTCAAACTCTAACGGCCTCCGCGTTAATGGTTCGGTCAAGAAAAGT CATTCGGAAGGATTCAGTACACGAGCAATCCATGTTGGTTCGGAACCCAATGCCGAAACTGGTGCTGTTATTCCT GCTATCTCGTTGAGTACTACATATAAGCAAGACGCCGTTGGTGTACACAAGGGCTACGAATATTCTCGCTCGTCA AATCCCAATAGGGATGCTCTTGAACGTACCCTTGCTTCGTTAGAAGTTGGCGGCGGTCATGGCTTGGCGTTTGCA TCAGGATCTGCGACGACTGCTACCGTGCTACAGCTCTTTGGAACTGGAGCGCATATCATCAGTGTTAATGATGTT TATGGCGGAACGTTCCGGTACATGTCGAGAGTGGCAACTGAAAACCAAGGATTAGAAACGACTTTTCTTGATTTG GAGACTCTAAGCGAGGATGGCCATGAACTCCTTGATAAAATACGAGATAACACAAAACTCATTTGGATCGAATCC CCAACTAATCCCACACTTCGATTAATATCCGTAGAGTCTATTCGCGCGCATATCTCAAAATTAACCAACCCTCCT CTAATTCTCGTGGACAACACCTTCCTCTCACCGTTCTACTCTTCTCCTCTCCTCCTCGGAGCCGACATTGTCATG CACTCTCTTACTAAATACGTCAATGGTCATTCCGACGTCGTCATGGGAGCTCTCATCCTCCCCAATACCCCCTTC CACACCGAACTCGCCAATAAATTACGATTCCTACAGAACGCTATTGGTGCTATTCCCTCATCTTATGATTCTTGG CTCGCTCAGAGAGGTGCCAAGACTTTGGCTTTGCGTATGAAAGCACACGGAACAAACGCTCTTTCTGTGGCACGT GCATTAAAATCCAGTCCTTTGGTTGAAGATGTTATATACCCCGGTCTTGCTAGTCATAGAAGACACGACATTGCA TGGGAATCATTATCCCCCCACGCCCGTAAATGGATCCAATCACTTCCTGGTAATTTATCCGAACAAACGGATTTC CCGTATTCTGGAATGATATCTTTCCGTATTAAAGGTGGATTTGAGGCTGCGGAGAAGTTTTTGACTTCGACAAAG TTGTTTACTTTGGCGGAGAGTTTGGGCGGTGTGGAGAGTTTGGCGGAACATCCGGCGAAGATGACGCATGGGAGT ATTCCACCGGATGAGAGGGAGAAATTGGGTATTAGTGATGGGTTGATTAGGTTGAGTGTTGGTGTGGAAGAGGAG GAGGATTTGGTTGAGGATGTTTTGCAAGCGTTAGAGAAGGCTGCGGGAAAACTCTAA |
Transcript | >AgabiH97|020120 ATGTCTCCAGGACTCGACGTACACCAGTTTTCAAACTCTAACGGCCTCCGCGTTAATGGTTCGGTCAAGAAAAGT CATTCGGAAGGATTCAGTACACGAGCAATCCATGTTGGTTCGGAACCCAATGCCGAAACTGGTGCTGTTATTCCT GCTATCTCGTTGAGTACTACATATAAGCAAGACGCCGTTGGTGTACACAAGGGCTACGAATATTCTCGCTCGTCA AATCCCAATAGGGATGCTCTTGAACGTACCCTTGCTTCGTTAGAAGTTGGCGGCGGTCATGGCTTGGCGTTTGCA TCAGGATCTGCGACGACTGCTACCGTGCTACAGCTCTTTGGAACTGGAGCGCATATCATCAGTGTTAATGATGTT TATGGCGGAACGTTCCGGTACATGTCGAGAGTGGCAACTGAAAACCAAGGATTAGAAACGACTTTTCTTGATTTG GAGACTCTAAGCGAGGATGGCCATGAACTCCTTGATAAAATACGAGATAACACAAAACTCATTTGGATCGAATCC CCAACTAATCCCACACTTCGATTAATATCCGTAGAGTCTATTCGCGCGCATATCTCAAAATTAACCAACCCTCCT CTAATTCTCGTGGACAACACCTTCCTCTCACCGTTCTACTCTTCTCCTCTCCTCCTCGGAGCCGACATTGTCATG CACTCTCTTACTAAATACGTCAATGGTCATTCCGACGTCGTCATGGGAGCTCTCATCCTCCCCAATACCCCCTTC CACACCGAACTCGCCAATAAATTACGATTCCTACAGAACGCTATTGGTGCTATTCCCTCATCTTATGATTCTTGG CTCGCTCAGAGAGGTGCCAAGACTTTGGCTTTGCGTATGAAAGCACACGGAACAAACGCTCTTTCTGTGGCACGT GCATTAAAATCCAGTCCTTTGGTTGAAGATGTTATATACCCCGGTCTTGCTAGTCATAGAAGACACGACATTGCA TGGGAATCATTATCCCCCCACGCCCGTAAATGGATCCAATCACTTCCTGGTAATTTATCCGAACAAACGGATTTC CCGTATTCTGGAATGATATCTTTCCGTATTAAAGGTGGATTTGAGGCTGCGGAGAAGTTTTTGACTTCGACAAAG TTGTTTACTTTGGCGGAGAGTTTGGGCGGTGTGGAGAGTTTGGCGGAACATCCGGCGAAGATGACGCATGGGAGT ATTCCACCGGATGAGAGGGAGAAATTGGGTATTAGTGATGGGTTGATTAGGTTGAGTGTTGGTGTGGAAGAGGAG GAGGATTTGGTTGAGGATGTTTTGCAAGCGTTAGAGAAGGCTGCGGGAAAACTCTAA |
Gene | >AgabiH97|020120 ATGTCTCCAGGACTCGACGTACACCAGTTTTCAAACTCTAACGGCCTCCGCGTTAATGGTTCGGTCAAGAAAAGT CATTCGGAAGGATTCAGTACACGAGCAATCCATGTTGGTTCGGAACCCAATGCCGAAACTGGTGCTGTTATTCCT GCTATCTCGTTGAGTACTACATATAAGCAAGACGCCGTTGGTGTACACAAGGTGCGTGTCAATAGCCAAAACAAA CTTCCTGACATCGATTACTGATTGATGGTATAAATAGGGCTACGAATATTCTCGCTCGTCAAATCCCAATAGGGA TGCTCTTGAACGTACCCTTGCTTCGTTAGAAGTTGGCGGCGGTCATGGCTTGGCGTTTGCATCAGGATCTGCGAC GACTGCTACCGTGCTACAGCTCTTTGGAACTGGAGCGCATATCATCAGTGTTAATGATGTTTATGGCGGAACGTT CCGGTACATGTCGAGAGTGGCAACTGAAAACCAAGGATTAGAAACGACTTTTCTTGATTTGGAGACTCTAAGCGA GGATGGCCATGAACTCCTTGATAAAATACGAGATAACACAAAAGTGAGAGAATCGTCTTTTTGATCTAGTCTCCC GAAATCTAAACTCGATATGATAGCTCATTTGGATCGAATCCCCAACTAATCCCACACTTCGATTAATATCCGTAG AGTCTATTCGCGCGCATATCTCAAAATTAACCAACCCTCCTCTAATTCTCGTGGACAACACCTTCCTCTCACCGT TCTACTCTTCTCCTCTCCTCCTCGGAGCCGACATTGTCATGCACTCTCTTACTAAATACGTCAATGGTCATTCCG ACGTCGTCATGGGAGCTCTCATCCTCCCCAATACCCCCTTCCACACCGAACTCGCCAATAAATTACGATTCCTAC AGAACGCTATTGGTGCTATTCCCTCATCTTATGATTCTTGGCTCGCTCAGAGAGGTGCCAAGACTTTGGCTTTGC GTATGAAAGCACACGGAACAAACGCTCTTTCTGTGGCACGTGCATTAAAATCCAGTCCTTTGGTTGAAGATGTTA TATACCCCGGTCTTGCTAGTCATAGAAGACACGACATTGCATGGGAATCATTATCCCCCCACGCCCGTAAATGGA TCCAATCACTTCCTGGTAATTTATCCGAACAAACGGATTTCCCGTATTCTGGAATGATATCTTTCCGTATTAAAG GTGGATTTGAGGCTGCGGAGAAGTTTTTGACTTCGACAAAGTTGTTTACTTTGGCGGAGAGTTTGGGCGGTGTGG AGAGTTTGGCGGAACATCCGGCGAAGATGACGCATGGGAGTATTCCACCGGATGAGAGGGAGAAATTGGGTATTA GTGATGGGTTGATTAGGTTGAGTGTTGGTGTGGAAGAGGAGGAGGATTTGGTTGAGGATGTTTTGCAAGCGTTAG AGAAGGCTGCGGGAAAACTCTAA |