Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|020020
Gene name
Locationscaffold_10:1322345..1323764
Strand+
Gene length (bp)1419
Transcript length (bp)948
Coding sequence length (bp)948
Protein length (aa) 316

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cell membrane Transmembrane domain 0.1363 0.095 0.1233 0.3996 0.1519 0.0021 0.0573 0.171 0.2994 0.0052

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 10 31 21
2 52 74 22
3 94 116 22
4 123 145 22
5 168 190 22
6 222 242 20
7 247 269 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup1245
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|019720
Agaricus bisporus var bisporus H39 AgabiH39|019730
Agaricus bisporus var bisporus H39 AgabiH39|019740
Agaricus bisporus var bisporus H39 AgabiH39|019750
Agaricus bisporus var bisporus H39 AgabiH39|019950
Agaricus bisporus var bisporus H39 AgabiH39|020020
Agaricus bisporus var bisporus H39 AgabiH39|479900
Agaricus bisporus var bisporus H39 AgabiH39|539400
Agaricus bisporus var bisporus H97 AgabiH97|019720
Agaricus bisporus var bisporus H97 AgabiH97|019730
Agaricus bisporus var bisporus H97 AgabiH97|019740
Agaricus bisporus var bisporus H97 AgabiH97|019750
Agaricus bisporus var bisporus H97 AgabiH97|019950
Agaricus bisporus var bisporus H97 AgabiH97|020020 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|020210
Agaricus bisporus var bisporus H97 AgabiH97|034710

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|020020
MGHSFPEGQVLALMIGSILYGLNLVTVWLTLQRLFRERGNWKRGWDINFPMTAVVIVLFMASTTNLALQVALVMR
MLSQSRPEDFRVERSKIIVAQAILLILETIIADGVLLFRCWIVWNKMILIIVLPLVLWVGCVSSSAYASYCLYRI
LLHPTPVAALDLGAKTYAASVAFWTATITVNIYCTGLIVGRICSVQQGWRPPSICSLQNLPQRGRLQLAKRIVIE
SAMMYTVSSLSAFISHICPVSAAINITCIAEAQIIGIAFNLILIRPWSQKQDHESELCKPRTRWLICHNMPSNNI
ALGDGNLRLRLCHDL*
Coding >AgabiH97|020020
ATGGGTCATTCTTTTCCTGAAGGCCAAGTGCTGGCGCTCATGATTGGATCCATATTATATGGCCTGAACTTAGTT
ACGGTTTGGTTAACTCTTCAGCGTCTTTTCAGAGAGAGAGGAAACTGGAAACGCGGTTGGGACATCAATTTCCCT
ATGACGGCGGTCGTTATCGTACTCTTTATGGCGTCGACGACAAACTTGGCACTCCAAGTTGCTCTTGTAATGCGG
ATGTTGTCGCAGTCTCGTCCAGAGGACTTTCGGGTGGAGCGAAGTAAAATCATCGTTGCACAAGCTATCCTGTTG
ATTCTTGAGACGATTATTGCTGATGGTGTACTGCTCTTCAGGTGCTGGATCGTCTGGAATAAGATGATCCTTATT
ATCGTCCTACCCCTGGTTCTTTGGGTGGGATGTGTGTCTTCTAGTGCCTACGCTAGCTACTGTTTATATCGGATC
TTACTGCACCCGACGCCGGTGGCAGCTCTTGATCTTGGGGCAAAGACATATGCAGCCTCCGTGGCATTCTGGACT
GCCACAATCACAGTGAATATCTACTGTACGGGATTGATTGTAGGGAGAATTTGTTCCGTACAACAGGGTTGGAGA
CCGCCCTCCATATGTTCTTTACAGAATTTACCGCAACGAGGTCGATTGCAACTGGCCAAACGCATAGTCATTGAG
TCGGCTATGATGTATACAGTGTCATCTTTGAGTGCCTTTATCAGTCATATTTGTCCAGTGAGCGCCGCAATTAAC
ATTACATGTATAGCAGAAGCTCAAATCATCGGAATTGCCTTTAATCTGATACTTATCAGACCATGGTCTCAGAAG
CAGGACCATGAAAGCGAGTTATGCAAACCACGGACTCGCTGGTTGATATGCCATAATATGCCTTCGAATAATATA
GCGCTCGGCGATGGCAACCTCCGGCTCAGACTATGCCATGATTTATAG
Transcript >AgabiH97|020020
ATGGGTCATTCTTTTCCTGAAGGCCAAGTGCTGGCGCTCATGATTGGATCCATATTATATGGCCTGAACTTAGTT
ACGGTTTGGTTAACTCTTCAGCGTCTTTTCAGAGAGAGAGGAAACTGGAAACGCGGTTGGGACATCAATTTCCCT
ATGACGGCGGTCGTTATCGTACTCTTTATGGCGTCGACGACAAACTTGGCACTCCAAGTTGCTCTTGTAATGCGG
ATGTTGTCGCAGTCTCGTCCAGAGGACTTTCGGGTGGAGCGAAGTAAAATCATCGTTGCACAAGCTATCCTGTTG
ATTCTTGAGACGATTATTGCTGATGGTGTACTGCTCTTCAGGTGCTGGATCGTCTGGAATAAGATGATCCTTATT
ATCGTCCTACCCCTGGTTCTTTGGGTGGGATGTGTGTCTTCTAGTGCCTACGCTAGCTACTGTTTATATCGGATC
TTACTGCACCCGACGCCGGTGGCAGCTCTTGATCTTGGGGCAAAGACATATGCAGCCTCCGTGGCATTCTGGACT
GCCACAATCACAGTGAATATCTACTGTACGGGATTGATTGTAGGGAGAATTTGTTCCGTACAACAGGGTTGGAGA
CCGCCCTCCATATGTTCTTTACAGAATTTACCGCAACGAGGTCGATTGCAACTGGCCAAACGCATAGTCATTGAG
TCGGCTATGATGTATACAGTGTCATCTTTGAGTGCCTTTATCAGTCATATTTGTCCAGTGAGCGCCGCAATTAAC
ATTACATGTATAGCAGAAGCTCAAATCATCGGAATTGCCTTTAATCTGATACTTATCAGACCATGGTCTCAGAAG
CAGGACCATGAAAGCGAGTTATGCAAACCACGGACTCGCTGGTTGATATGCCATAATATGCCTTCGAATAATATA
GCGCTCGGCGATGGCAACCTCCGGCTCAGACTATGCCATGATTTATAG
Gene >AgabiH97|020020
ATGGGTCATTCTTTTCCTGAAGGCCAAGTGCTGGCGCTCATGATTGGATCCATATTATATGGCCTGAACTTAGTT
ACGGTTTGGTTAACTCTTCAGCGTCTTTTCAGAGAGAGAGGAAACTGGAAACGCGGTTGGGACATCAATTTCCCT
ATGACGGCGGTCGTTATCGTACTCTTTATGGCGTCGACGACAAACTTGGCACTCCAAGTTGCTCTTGTAATGCGG
ATGTTGTCGCAGTCTCGTCCAGAGGACTTTCGGGTGGAGCGAAGTAAAATCATCGTTGCACAAGTATGCTCTCCT
GTCCTTTTTTGCGTGGTTGCGAGTGTTAATGTTCGGCCGTTTATAGGCTATCCTGTTGATTCTTGAGACGATTAT
TGCTGATGGTGTACTGGTAAGGCTTTGAAGGAATACCTTTAGAGTTAGAGAAATCTGACGCTCAGGTTGGTGAAT
TATTGAAGCTCTTCAGGTGCTGGATCGTCTGGAATAAGATGATCCTTATTATCGTCCTACCCCTGGTTCTTTGGG
TGGGATGTGTGTCTTCTAGTGCCTACGCTAGCTACTGTTTATATCGGATCTTACTGCACCCGACGCCGGTGGCAG
CTCTTGATCTTGGGGCAAAGACATATGCAGCCTCCGTGGCATTCTGGACTGCCACAATCACAGTGAATATCTACT
GTACGGGTAAGCCACTTATTTTGGAAATATAGCACACACTGCCATGTATAATTGTTTAGGATTGATTGTAGGGAG
AATTTGTTCCGTACAACAGGGTTGGAGACCGCCCTCCATATGTTCTTTACAGAATTTACCGCAACGAGGTCGATT
GCAACTGGCCAAACGCATAGTCATTGAGTCGGCTATGATGTATACAGTGTCATCTTTGAGTGCCTTTATCAGTCA
TATTTGTCCAGTGAGCGCCGCAATTAACATTACATGTATAGCAGTGAGTCACCCGACTTTAAGGCCGATTATTTT
CTTATTAGTATGTTTAACAGGAAGCTCAAATCATCGGAATTGCCTTTAATCTGATACTTATCAGACCATGGTCTC
AGAAGCAGGACCATGAAAGCGAGTTATGCGTCAGAGGTTCTGAACCGAAGACGAAACGCTCGACAGTTAGCGTTG
CGGTAGAAACCACGGACTCGCTGGTTGATATGCCATAATATGCCTTCGAATGTGCGTCGTCGAGCACTAGTGCTT
GGATAACAGATTGGAAAGAATGAACACCATGCCGGATAATAGAATATAGCGGTGCCCGACCTCATACTAGGTTCT
TATTCTATCTTTGAATCACTGGAATCGTCGTAGCTCGGCGATGGCAACCTCCGGTGAGTGAGCTTCGGGCTTTGA
TATACTCTTTGCTGCTTTTTATTGATATCACTGTACGTTAACAGGCTCAGACTATGCCATGATTTATAG

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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