Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|019810
Gene name
Locationscaffold_10:1279024..1280850
Strand-
Gene length (bp)1826
Transcript length (bp)1557
Coding sequence length (bp)1557
Protein length (aa) 519

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03807 F420_oxidored NADP oxidoreductase coenzyme F420-dependent 4.9E-06 22 103

Swissprot hits

Swissprot ID Swissprot Description Start End E-value
sp|O60078|TYR1_SCHPO Probable prephenate dehydrogenase [NADP(+)] OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tyr1 PE=2 SV=1 23 501 2.0E-149
sp|P20049|TYR1_YEAST Prephenate dehydrogenase [NADP(+)] OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TYR1 PE=1 SV=2 22 510 3.0E-141
sp|Q58029|Y612_METJA Probable arogenate/prephenate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0612 PE=3 SV=1 22 271 1.0E-13

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 37 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 38.46 21.15 55.78
Initials Initials knots 32.88 19.11 46.64
Pileal_Stipeal_center Stage I stipe center 19.12 10.36 27.88
Pileal_Stipeal_shell Stage I stipe shell 18.83 10.25 27.40
DIF_stipe_center Stage II stipe center 12.65 6.50 18.79
DIF_stipe_shell Stage II stipe shell 12.47 6.47 18.46
DIF_stipe_skin Stage II stipe skin 16.09 8.61 23.57
DIF_cap_skin Stage II cap skin 21.23 11.79 30.67
DIF_cap_tissue Stage II cap tissue 16.25 8.73 23.78
DIF_gill_tissue Stage II gill tissue 17.11 9.23 25.00
YFB_stipe_center Young fruiting body stipe center 12.86 6.63 19.08
YFB_stipe_shell Young fruiting body stipe shell 10.20 5.11 15.30
YFB_stipe_skin Young fruiting body stipe skin 16.98 9.13 24.82
YFB_cap_skin Young fruiting body cap skin 33.26 19.25 47.26
YFB_cap_tissue Young fruiting body cap tissue 16.95 9.06 24.84
YFB_gill_tissue Young fruiting body gill tissue 27.84 14.83 40.85
YFB_veil Young fruiting body veil 15.65 8.33 22.96

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.002951 yes
Casing YFB_stipe_center 0.000613 yes
Casing YFB_stipe_shell 0.000613 yes
Casing YFB_stipe_skin 0.002525 yes
Casing YFB_cap_skin 0.749518 no
Casing YFB_cap_tissue 0.002951 yes
Casing YFB_gill_tissue 0.373742 no
Casing YFB_veil 0.002084 yes
Casing Initials 0.721106 no
Casing Pileal_Stipeal_center 0.016386 yes
Casing Pileal_Stipeal_shell 0.014374 yes
Casing DIF_stipe_center 0.000613 yes
Casing DIF_stipe_shell 0.000613 yes
Casing DIF_stipe_skin 0.002951 yes
Casing DIF_cap_skin 0.046952 yes
Casing DIF_cap_tissue 0.001140 yes
DIF_gill_tissue YFB_stipe_center 0.495895 no
DIF_gill_tissue YFB_stipe_shell 0.130818 no
DIF_gill_tissue YFB_stipe_skin 0.988742 no
DIF_gill_tissue YFB_cap_skin 0.018344 yes
DIF_gill_tissue YFB_cap_tissue 0.987774 no
DIF_gill_tissue YFB_gill_tissue 0.136034 no
DIF_gill_tissue YFB_veil 0.881349 no
YFB_stipe_center YFB_stipe_shell 0.621333 no
YFB_stipe_center YFB_stipe_skin 0.500175 no
YFB_stipe_center YFB_cap_skin 0.001140 yes
YFB_stipe_center YFB_cap_tissue 0.505497 no
YFB_stipe_center YFB_gill_tissue 0.010728 yes
YFB_stipe_center YFB_veil 0.689049 no
YFB_stipe_shell YFB_stipe_skin 0.135297 no
YFB_stipe_shell YFB_cap_skin 0.000613 yes
YFB_stipe_shell YFB_cap_tissue 0.135743 no
YFB_stipe_shell YFB_gill_tissue 0.001625 yes
YFB_stipe_shell YFB_veil 0.250684 no
YFB_stipe_skin YFB_cap_skin 0.018624 yes
YFB_stipe_skin YFB_cap_tissue 0.998164 no
YFB_stipe_skin YFB_gill_tissue 0.128955 no
YFB_stipe_skin YFB_veil 0.890234 no
YFB_cap_skin YFB_cap_tissue 0.014668 yes
YFB_cap_skin YFB_gill_tissue 0.680086 no
YFB_cap_skin YFB_veil 0.012274 yes
YFB_cap_tissue YFB_gill_tissue 0.125142 no
YFB_cap_tissue YFB_veil 0.892077 no
YFB_gill_tissue YFB_veil 0.070499 no
Initials DIF_gill_tissue 0.020790 yes
Initials YFB_stipe_center 0.002084 yes
Initials YFB_stipe_shell 0.000613 yes
Initials YFB_stipe_skin 0.019715 yes
Initials YFB_cap_skin 0.983119 no
Initials YFB_cap_tissue 0.016386 yes
Initials YFB_gill_tissue 0.706780 no
Initials YFB_veil 0.013782 yes
Initials Pileal_Stipeal_center 0.062610 no
Initials Pileal_Stipeal_shell 0.058926 no
Initials DIF_stipe_center 0.001625 yes
Initials DIF_stipe_shell 0.000613 yes
Initials DIF_stipe_skin 0.013782 yes
Initials DIF_cap_skin 0.161440 no
Initials DIF_cap_tissue 0.010412 yes
Pileal_Stipeal_center DIF_gill_tissue 0.838130 no
Pileal_Stipeal_center YFB_stipe_center 0.279275 no
Pileal_Stipeal_center YFB_stipe_shell 0.054170 no
Pileal_Stipeal_center YFB_stipe_skin 0.820445 no
Pileal_Stipeal_center YFB_cap_skin 0.061086 no
Pileal_Stipeal_center YFB_cap_tissue 0.815664 no
Pileal_Stipeal_center YFB_gill_tissue 0.287292 no
Pileal_Stipeal_center YFB_veil 0.669256 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.980761 no
Pileal_Stipeal_center DIF_stipe_center 0.248876 no
Pileal_Stipeal_center DIF_stipe_shell 0.228037 no
Pileal_Stipeal_center DIF_stipe_skin 0.726627 no
Pileal_Stipeal_center DIF_cap_skin 0.847105 no
Pileal_Stipeal_center DIF_cap_tissue 0.736561 no
Pileal_Stipeal_shell DIF_gill_tissue 0.864784 no
Pileal_Stipeal_shell YFB_stipe_center 0.308255 no
Pileal_Stipeal_shell YFB_stipe_shell 0.059318 no
Pileal_Stipeal_shell YFB_stipe_skin 0.848502 no
Pileal_Stipeal_shell YFB_cap_skin 0.051932 no
Pileal_Stipeal_shell YFB_cap_tissue 0.843512 no
Pileal_Stipeal_shell YFB_gill_tissue 0.263104 no
Pileal_Stipeal_shell YFB_veil 0.701561 no
Pileal_Stipeal_shell DIF_stipe_center 0.276817 no
Pileal_Stipeal_shell DIF_stipe_shell 0.253995 no
Pileal_Stipeal_shell DIF_stipe_skin 0.755783 no
Pileal_Stipeal_shell DIF_cap_skin 0.818610 no
Pileal_Stipeal_shell DIF_cap_tissue 0.765593 no
DIF_stipe_center DIF_gill_tissue 0.459947 no
DIF_stipe_center YFB_stipe_center 0.980135 no
DIF_stipe_center YFB_stipe_shell 0.659145 no
DIF_stipe_center YFB_stipe_skin 0.469557 no
DIF_stipe_center YFB_cap_skin 0.000613 yes
DIF_stipe_center YFB_cap_tissue 0.475436 no
DIF_stipe_center YFB_gill_tissue 0.009446 yes
DIF_stipe_center YFB_veil 0.659008 no
DIF_stipe_center DIF_stipe_shell 0.982231 no
DIF_stipe_center DIF_stipe_skin 0.594956 no
DIF_stipe_center DIF_cap_skin 0.119761 no
DIF_stipe_center DIF_cap_tissue 0.562858 no
DIF_stipe_shell DIF_gill_tissue 0.423173 no
DIF_stipe_shell YFB_stipe_center 0.963153 no
DIF_stipe_shell YFB_stipe_shell 0.686379 no
DIF_stipe_shell YFB_stipe_skin 0.434403 no
DIF_stipe_shell YFB_cap_skin 0.000613 yes
DIF_stipe_shell YFB_cap_tissue 0.437663 no
DIF_stipe_shell YFB_gill_tissue 0.009446 yes
DIF_stipe_shell YFB_veil 0.624182 no
DIF_stipe_shell DIF_stipe_skin 0.559255 no
DIF_stipe_shell DIF_cap_skin 0.099595 no
DIF_stipe_shell DIF_cap_tissue 0.527297 no
DIF_stipe_skin DIF_gill_tissue 0.921341 no
DIF_stipe_skin YFB_stipe_center 0.625258 no
DIF_stipe_skin YFB_stipe_shell 0.205053 no
DIF_stipe_skin YFB_stipe_skin 0.930651 no
DIF_stipe_skin YFB_cap_skin 0.013485 yes
DIF_stipe_skin YFB_cap_tissue 0.931506 no
DIF_stipe_skin YFB_gill_tissue 0.089469 no
DIF_stipe_skin YFB_veil 0.966355 no
DIF_stipe_skin DIF_cap_skin 0.487851 no
DIF_stipe_skin DIF_cap_tissue 0.986433 no
DIF_cap_skin DIF_gill_tissue 0.616287 no
DIF_cap_skin YFB_stipe_center 0.130962 no
DIF_cap_skin YFB_stipe_shell 0.021583 yes
DIF_cap_skin YFB_stipe_skin 0.593299 no
DIF_cap_skin YFB_cap_skin 0.150303 no
DIF_cap_skin YFB_cap_tissue 0.590773 no
DIF_cap_skin YFB_gill_tissue 0.487445 no
DIF_cap_skin YFB_veil 0.432917 no
DIF_cap_skin DIF_cap_tissue 0.499434 no
DIF_cap_tissue DIF_gill_tissue 0.933586 no
DIF_cap_tissue YFB_stipe_center 0.594282 no
DIF_cap_tissue YFB_stipe_shell 0.183309 no
DIF_cap_tissue YFB_stipe_skin 0.942888 no
DIF_cap_tissue YFB_cap_skin 0.008457 yes
DIF_cap_tissue YFB_cap_tissue 0.943786 no
DIF_cap_tissue YFB_gill_tissue 0.086585 no
DIF_cap_tissue YFB_veil 0.952375 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|019810
MELPINVDPNVTPNAPEHDQPTIGLIGMGAMGRMYAKLFSQAGWKKIYVCDLPEKYERLKEEYANTPGVFPQPNG
YAVSRSADYIVYSVEAEYIDRVVAQYGPSTKVNAIVAGQTSVKAPERAAFERHLPADVHILSCHSLHGPTVSPVG
QPLVLIQHRSSKDALTLVENILRSFRSRFVYLSYEEHDSVTANTQAVTHAAFLSMGTAWASAESYPWEQGLYVGG
IETAKVNLALRIYSNAWHVYAGLAILNPSARTQIHQYAKSASELFKLMLSGGSGSLEDRTKFKERVEWARKTVFS
EWGTHNEIFEEDDNHMPTNSSPLSSRPPSPTRRKPILLSASILDKFSMGMPQTSTQNVVPASPTDPSPLQSSLAP
PPNHRPNSHLSLIAMVDCWAHLGINPYTHLQLAATPIFRLFLGVAEHLFQSSTLLKSAIHSAIYDHWHRSDDLEF
VVAARGWSQCVSFGSFEVYRKRFEETRGFFESRFEEAGKLGSEMIKAVMESEVRREKEEEERMRKMAV*
Coding >AgabiH97|019810
ATGGAACTACCCATCAACGTAGATCCCAACGTCACCCCAAATGCCCCTGAACACGATCAGCCAACTATTGGGCTC
ATCGGTATGGGCGCCATGGGTCGTATGTACGCTAAATTATTCAGCCAGGCCGGTTGGAAGAAGATTTACGTGTGT
GATCTACCAGAAAAGTATGAAAGGCTAAAAGAGGAGTATGCTAATACACCTGGAGTCTTTCCTCAGCCAAATGGA
TACGCCGTATCTAGGTCGGCAGACTATATCGTATATTCAGTCGAAGCGGAATATATCGATCGCGTGGTTGCACAG
TATGGTCCTTCTACCAAAGTGAATGCGATTGTCGCTGGTCAAACTTCTGTCAAAGCCCCTGAAAGAGCTGCATTC
GAAAGACATCTTCCTGCAGATGTACATATTCTTTCTTGTCACTCGCTACATGGACCTACAGTCAGTCCAGTCGGT
CAACCTCTTGTTCTTATTCAACATAGATCTAGCAAGGATGCTCTAACACTAGTCGAAAACATCCTCCGTTCATTC
CGCTCTCGCTTCGTTTATCTCTCCTACGAAGAGCACGACTCAGTCACTGCCAATACCCAAGCAGTAACACACGCA
GCCTTTCTCAGTATGGGCACAGCATGGGCATCAGCCGAATCCTATCCATGGGAACAGGGTCTTTACGTCGGTGGA
ATAGAAACAGCAAAAGTCAACCTCGCACTTCGGATTTACTCTAATGCGTGGCATGTTTATGCTGGCCTCGCAATT
CTAAACCCAAGTGCTCGCACTCAAATCCATCAATACGCTAAAAGCGCTTCAGAGTTATTTAAACTCATGTTAAGT
GGTGGTAGCGGTTCTTTAGAAGATCGCACCAAATTCAAAGAACGCGTTGAATGGGCTCGGAAAACCGTGTTTTCC
GAATGGGGAACGCATAACGAGATATTCGAAGAGGACGATAACCATATGCCGACAAATTCTAGTCCACTTTCGTCG
AGACCACCGTCTCCTACAAGACGAAAACCAATCTTACTCTCCGCTTCAATTTTAGATAAGTTTAGTATGGGAATG
CCACAAACTTCAACACAAAACGTCGTACCAGCATCTCCTACCGATCCTTCACCTCTTCAAAGCTCTCTCGCACCA
CCACCCAATCATCGTCCCAATTCTCATCTCTCTCTCATCGCCATGGTTGATTGTTGGGCCCACCTCGGTATAAAC
CCTTACACCCACCTTCAACTCGCCGCAACACCCATATTCCGACTATTCCTCGGTGTAGCCGAACATCTATTTCAA
TCATCGACTTTATTGAAAAGTGCTATCCATTCGGCGATTTACGATCATTGGCATAGGTCTGATGATTTGGAATTT
GTTGTTGCTGCGAGAGGTTGGAGTCAGTGTGTTAGTTTTGGAAGTTTTGAGGTTTATAGGAAGAGGTTTGAGGAG
ACGAGAGGGTTTTTTGAGTCGAGGTTTGAGGAGGCTGGGAAATTGGGGAGTGAGATGATTAAAGCGGTGATGGAG
AGTGAGGTTAGGAGGGAGAAGGAGGAGGAGGAGAGGATGCGTAAGATGGCGGTATGA
Transcript >AgabiH97|019810
ATGGAACTACCCATCAACGTAGATCCCAACGTCACCCCAAATGCCCCTGAACACGATCAGCCAACTATTGGGCTC
ATCGGTATGGGCGCCATGGGTCGTATGTACGCTAAATTATTCAGCCAGGCCGGTTGGAAGAAGATTTACGTGTGT
GATCTACCAGAAAAGTATGAAAGGCTAAAAGAGGAGTATGCTAATACACCTGGAGTCTTTCCTCAGCCAAATGGA
TACGCCGTATCTAGGTCGGCAGACTATATCGTATATTCAGTCGAAGCGGAATATATCGATCGCGTGGTTGCACAG
TATGGTCCTTCTACCAAAGTGAATGCGATTGTCGCTGGTCAAACTTCTGTCAAAGCCCCTGAAAGAGCTGCATTC
GAAAGACATCTTCCTGCAGATGTACATATTCTTTCTTGTCACTCGCTACATGGACCTACAGTCAGTCCAGTCGGT
CAACCTCTTGTTCTTATTCAACATAGATCTAGCAAGGATGCTCTAACACTAGTCGAAAACATCCTCCGTTCATTC
CGCTCTCGCTTCGTTTATCTCTCCTACGAAGAGCACGACTCAGTCACTGCCAATACCCAAGCAGTAACACACGCA
GCCTTTCTCAGTATGGGCACAGCATGGGCATCAGCCGAATCCTATCCATGGGAACAGGGTCTTTACGTCGGTGGA
ATAGAAACAGCAAAAGTCAACCTCGCACTTCGGATTTACTCTAATGCGTGGCATGTTTATGCTGGCCTCGCAATT
CTAAACCCAAGTGCTCGCACTCAAATCCATCAATACGCTAAAAGCGCTTCAGAGTTATTTAAACTCATGTTAAGT
GGTGGTAGCGGTTCTTTAGAAGATCGCACCAAATTCAAAGAACGCGTTGAATGGGCTCGGAAAACCGTGTTTTCC
GAATGGGGAACGCATAACGAGATATTCGAAGAGGACGATAACCATATGCCGACAAATTCTAGTCCACTTTCGTCG
AGACCACCGTCTCCTACAAGACGAAAACCAATCTTACTCTCCGCTTCAATTTTAGATAAGTTTAGTATGGGAATG
CCACAAACTTCAACACAAAACGTCGTACCAGCATCTCCTACCGATCCTTCACCTCTTCAAAGCTCTCTCGCACCA
CCACCCAATCATCGTCCCAATTCTCATCTCTCTCTCATCGCCATGGTTGATTGTTGGGCCCACCTCGGTATAAAC
CCTTACACCCACCTTCAACTCGCCGCAACACCCATATTCCGACTATTCCTCGGTGTAGCCGAACATCTATTTCAA
TCATCGACTTTATTGAAAAGTGCTATCCATTCGGCGATTTACGATCATTGGCATAGGTCTGATGATTTGGAATTT
GTTGTTGCTGCGAGAGGTTGGAGTCAGTGTGTTAGTTTTGGAAGTTTTGAGGTTTATAGGAAGAGGTTTGAGGAG
ACGAGAGGGTTTTTTGAGTCGAGGTTTGAGGAGGCTGGGAAATTGGGGAGTGAGATGATTAAAGCGGTGATGGAG
AGTGAGGTTAGGAGGGAGAAGGAGGAGGAGGAGAGGATGCGTAAGATGGCGGTATGA
Gene >AgabiH97|019810
ATGGAACTACCCATCAACGTAGATCCCAACGTCACCCCAAATGCCCCTGAACACGATCAGCCAACTATTGGGCTC
ATCGGTATGGGCGCCATGGGTCGTATGTACGCTAAATTATTCAGCCAGGCCGGTTGGAAGAAGTGCGTCATTCTC
GTTGTATTCCTGTTGTGATCACCGACGCTGTTTTAGGATTTACGTGTGTGATCTACCAGAAAAGTATGAAAGGCT
AAAAGAGGAGTATGCTAGTGCGCCTTTTATTGCGATCAGGGTCCGCGAGTTCAGGGTCTAACCACTCGTTCGCAG
ATACACCTGGAGTCTTTCCTCAGCCAAATGGATACGCCGTATCTAGGTCGGCAGACTATATCGTATATTCAGTCG
AAGCGGAATATATCGATCGCGTGGTTGCACAGTATGGTCCTTGTGAGTCAATTACTCACTCAATCCCTCAAATTA
AAACTCTCCAATAGCTACCAAAGTGAATGCGATTGTCGCTGGTCAAACTTCTGTCAAAGCCCCTGAAAGAGCTGC
ATTCGAAAGACATCTTCCTGCAGATGTACATATTCTTTCTTGTCACTCGCTACATGGACCTACAGTCAGTCCAGT
CGGTCAACCTCTTGTGAGTTTCCTTCCCTTTTTCCTTCTGCGGGAAGTCCCTGATAGATAGACACTAGGTTCTTA
TTCAACATAGATCTAGCAAGGATGCTCTAACACTAGTCGAAAACATCCTCCGTTCATTCCGCTCTCGCTTCGTTT
ATCTCTCCTACGAAGAGCACGACTCAGTCACTGCCAATACCCAAGCAGTAACACACGCAGCCTTTCTCAGGTGTG
AACGCCAAACTTTCTCTCACAAAGTTTAACACCGTACTGACCTGTAGTCAAACAGTATGGGCACAGCATGGGCAT
CAGCCGAATCCTATCCATGGGAACAGGGTCTTTACGTCGGTGGAATAGAAACAGCAAAAGTCAACCTCGCACTTC
GGATTTACTCTAATGCGTGGCATGTTTATGCTGGCCTCGCAATTCTAAACCCAAGTGCTCGCACTCAAATCCATC
AATACGCTAAAAGCGCTTCAGAGTTATTTAAACTCATGTTAAGTGGTGGTAGCGGTTCTTTAGAAGATCGCACCA
AATTCAAAGAACGCGTTGAATGGGCTCGGAAAACCGTGTTTTCCGAATGGGGAACGCATAACGAGATATTCGAAG
AGGACGATAACCATATGCCGACAAATTCTAGTCCACTTTCGTCGAGACCACCGTCTCCTACAAGACGAAAACCAA
TCTTACTCTCCGCTTCAATTTTAGATAAGTTTAGTATGGGAATGCCACAAACTTCAACACAAAACGTCGTACCAG
CATCTCCTACCGATCCTTCACCTCTTCAAAGCTCTCTCGCACCACCACCCAATCATCGTCCCAATTCTCATCTCT
CTCTCATCGCCATGGTTGATTGTTGGGCCCACCTCGGTATAAACCCTTACACCCACCTTCAACTCGCCGCAACAC
CCATATTCCGACTATTCCTCGGTGTAGCCGAACATCTATTTCAATCATCGACTTTATTGAAAAGTGCTATCCATT
CGGCGATTTACGATCATTGGCATAGGTCTGATGATTTGGAATTTGTTGTTGCTGCGAGAGGTTGGAGTCAGTGTG
TTAGTTTTGGAAGTTTTGAGGTTTATAGGAAGAGGTTTGAGGAGACGAGAGGGTTTTTTGAGTCGAGGTTTGAGG
AGGCTGGGAAATTGGGGAGTGAGATGATTAAAGCGGTGATGGAGAGTGAGGTTAGGAGGGAGAAGGAGGAGGAGG
AGAGGATGCGTAAGATGGCGGTATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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