Protein ID | AgabiH97|019800 |
Gene name | |
Location | scaffold_10:1276029..1278002 |
Strand | - |
Gene length (bp) | 1973 |
Transcript length (bp) | 1230 |
Coding sequence length (bp) | 1230 |
Protein length (aa) | 410 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01053 | Cys_Met_Meta_PP | Cys/Met metabolism PLP-dependent enzyme | 2.5E-62 | 34 | 400 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P38716|YHR2_YEAST | Uncharacterized trans-sulfuration enzyme YHR112C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR112C PE=1 SV=1 | 19 | 405 | 3.0E-84 |
sp|O42851|YFHE_SCHPO | Uncharacterized trans-sulfuration enzyme C23A1.14c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23A1.14c PE=2 SV=1 | 13 | 402 | 2.0E-78 |
sp|O05394|MCCB_BACSU | Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1 | 11 | 402 | 2.0E-44 |
sp|Q55DV9|CGL_DICDI | Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=1 SV=1 | 18 | 401 | 3.0E-41 |
sp|P31373|CYS3_YEAST | Cystathionine gamma-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYS3 PE=1 SV=2 | 36 | 401 | 1.0E-38 |
Swissprot ID | Swissprot Description | Start | End | E-value |
---|---|---|---|---|
sp|P38716|YHR2_YEAST | Uncharacterized trans-sulfuration enzyme YHR112C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHR112C PE=1 SV=1 | 19 | 405 | 3.0E-84 |
sp|O42851|YFHE_SCHPO | Uncharacterized trans-sulfuration enzyme C23A1.14c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC23A1.14c PE=2 SV=1 | 13 | 402 | 2.0E-78 |
sp|O05394|MCCB_BACSU | Cystathionine gamma-lyase OS=Bacillus subtilis (strain 168) GN=mccB PE=1 SV=1 | 11 | 402 | 2.0E-44 |
sp|Q55DV9|CGL_DICDI | Cystathionine gamma-lyase OS=Dictyostelium discoideum GN=cysA PE=1 SV=1 | 18 | 401 | 3.0E-41 |
sp|P31373|CYS3_YEAST | Cystathionine gamma-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CYS3 PE=1 SV=2 | 36 | 401 | 1.0E-38 |
sp|P0C2T9|METC_LACLC | Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris GN=metC PE=1 SV=1 | 19 | 401 | 2.0E-38 |
sp|A2RM21|METC_LACLM | Cystathionine beta-lyase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=metC PE=1 SV=1 | 19 | 401 | 2.0E-38 |
sp|P0A4K2|METC_LACLA | Cystathionine beta-lyase OS=Lactococcus lactis subsp. lactis (strain IL1403) GN=metC PE=3 SV=1 | 19 | 401 | 2.0E-38 |
sp|P53780|METC_ARATH | Cystathionine beta-lyase, chloroplastic OS=Arabidopsis thaliana GN=At3g57050 PE=1 SV=1 | 10 | 400 | 6.0E-38 |
sp|P9WGB7|METB_MYCTU | Cystathionine gamma-synthase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=metB PE=1 SV=1 | 141 | 399 | 7.0E-38 |
sp|P9WGB6|METB_MYCTO | Cystathionine gamma-synthase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=metB PE=3 SV=1 | 141 | 399 | 7.0E-38 |
sp|P66876|METB_MYCBO | Cystathionine gamma-synthase OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=metB PE=3 SV=1 | 141 | 399 | 7.0E-38 |
sp|P56069|METB_HELPY | Cystathionine gamma-synthase OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=metB PE=1 SV=1 | 19 | 403 | 4.0E-37 |
sp|Q1M0P5|METB_HELPX | Cystathionine gamma-synthase OS=Helicobacter pylori GN=metB PE=1 SV=1 | 19 | 402 | 1.0E-36 |
sp|O31632|METC_BACSU | Cystathionine beta-lyase MetC OS=Bacillus subtilis (strain 168) GN=metC PE=1 SV=1 | 33 | 403 | 4.0E-36 |
sp|O31631|METI_BACSU | Cystathionine gamma-synthase/O-acetylhomoserine (thiol)-lyase OS=Bacillus subtilis (strain 168) GN=metI PE=1 SV=1 | 36 | 399 | 7.0E-36 |
sp|Q83A83|METC_COXBU | Cystathionine beta-lyase OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=metC PE=1 SV=1 | 36 | 399 | 1.0E-34 |
sp|Q9ZMW7|METB_HELPJ | Cystathionine gamma-synthase OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=metB PE=3 SV=1 | 19 | 402 | 2.0E-34 |
sp|P44502|METB_HAEIN | Cystathionine gamma-synthase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=metB PE=3 SV=1 | 36 | 402 | 1.0E-33 |
sp|P46807|METB_MYCLE | Cystathionine gamma-synthase OS=Mycobacterium leprae (strain TN) GN=metB PE=3 SV=1 | 34 | 400 | 4.0E-33 |
sp|P13254|MEGL_PSEPU | Methionine gamma-lyase OS=Pseudomonas putida GN=mdeA PE=1 SV=2 | 35 | 400 | 1.0E-32 |
sp|P00935|METB_ECOLI | Cystathionine gamma-synthase OS=Escherichia coli (strain K12) GN=metB PE=1 SV=1 | 36 | 400 | 2.0E-32 |
sp|Q60HG7|CGL_MACFA | Cystathionine gamma-lyase OS=Macaca fascicularis GN=CTH PE=2 SV=1 | 38 | 400 | 2.0E-32 |
sp|Q19QT7|CGL_PIG | Cystathionine gamma-lyase OS=Sus scrofa GN=CTH PE=2 SV=1 | 34 | 400 | 1.0E-30 |
sp|P55217|CGS1_ARATH | Cystathionine gamma-synthase 1, chloroplastic OS=Arabidopsis thaliana GN=CGS1 PE=1 SV=3 | 155 | 402 | 7.0E-30 |
sp|P32929|CGL_HUMAN | Cystathionine gamma-lyase OS=Homo sapiens GN=CTH PE=1 SV=3 | 38 | 384 | 6.0E-28 |
sp|Q8VCN5|CGL_MOUSE | Cystathionine gamma-lyase OS=Mus musculus GN=Cth PE=1 SV=1 | 38 | 400 | 9.0E-28 |
sp|Q9C876|CGS2_ARATH | Probable cystathionine gamma-synthase 2 OS=Arabidopsis thaliana GN=CGS2 PE=3 SV=1 | 55 | 402 | 2.0E-27 |
sp|Q59829|CYSA_STRCO | Putative cystathionine gamma-lyase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=cysA PE=3 SV=2 | 130 | 401 | 2.0E-27 |
sp|P55218|METZ_PSEAE | O-succinylhomoserine sulfhydrylase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=metZ PE=1 SV=1 | 71 | 402 | 2.0E-27 |
sp|P18757|CGL_RAT | Cystathionine gamma-lyase OS=Rattus norvegicus GN=Cth PE=1 SV=2 | 38 | 400 | 3.0E-27 |
sp|O94350|CBL_SCHPO | Cystathionine beta-lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=str3 PE=3 SV=4 | 142 | 406 | 3.0E-27 |
sp|Q58DW2|CGL_BOVIN | Cystathionine gamma-lyase OS=Bos taurus GN=CTH PE=2 SV=1 | 38 | 387 | 1.0E-26 |
sp|P55216|CGL2_CAEEL | Putative cystathionine gamma-lyase 2 OS=Caenorhabditis elegans GN=cth-2 PE=3 SV=1 | 38 | 400 | 2.0E-26 |
sp|Q1K8G0|CBL_NEUCR | Cystathionine beta-lyase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=met-2 PE=1 SV=1 | 36 | 404 | 1.0E-25 |
sp|P9WGB5|METZ_MYCTU | O-succinylhomoserine sulfhydrylase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) GN=metZ PE=1 SV=1 | 69 | 399 | 1.0E-24 |
sp|P9WGB4|METZ_MYCTO | O-succinylhomoserine sulfhydrylase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) GN=metZ PE=3 SV=1 | 69 | 399 | 1.0E-24 |
sp|P53101|STR3_YEAST | Cystathionine beta-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STR3 PE=1 SV=1 | 39 | 399 | 2.0E-22 |
sp|P24601|METB_HERAU | Probable cystathionine gamma-synthase (Fragment) OS=Herpetosiphon aurantiacus GN=metB PE=3 SV=1 | 148 | 297 | 8.0E-22 |
sp|Q52811|METC_RHIL3 | Putative cystathionine beta-lyase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=metC PE=3 SV=2 | 155 | 399 | 3.0E-19 |
sp|P44527|METC_HAEIN | Cystathionine beta-lyase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=metC PE=3 SV=1 | 155 | 403 | 5.0E-17 |
sp|P18949|METC_SALTY | Cystathionine beta-lyase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=metC PE=3 SV=2 | 128 | 402 | 7.0E-16 |
sp|P06721|METC_ECOLI | Cystathionine beta-lyase MetC OS=Escherichia coli (strain K12) GN=metC PE=1 SV=1 | 128 | 402 | 1.0E-15 |
sp|P43623|METC_YEAST | Putative cystathionine beta-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=IRC7 PE=1 SV=1 | 145 | 298 | 2.0E-15 |
sp|Q07703|METC_BORAV | Cystathionine beta-lyase OS=Bordetella avium GN=metC PE=1 SV=3 | 155 | 401 | 2.0E-14 |
sp|P06106|MET17_YEAST | Protein MET17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MET17 PE=1 SV=3 | 156 | 406 | 1.0E-11 |
sp|O13326|CYSD_SCHPO | O-acetylhomoserine (thiol)-lyase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC428.11 PE=2 SV=1 | 71 | 400 | 3.0E-11 |
sp|P50125|CYSD_EMENI | O-acetylhomoserine (thiol)-lyase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cysD PE=2 SV=2 | 156 | 399 | 1.0E-10 |
sp|Q9SGU9|MGL_ARATH | Methionine gamma-lyase OS=Arabidopsis thaliana GN=MGL PE=1 SV=1 | 33 | 402 | 7.0E-10 |
sp|Q92441|MET17_KLULA | Protein MET17 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=MET17 PE=3 SV=3 | 34 | 406 | 1.0E-09 |
GO Term | Description | Terminal node |
---|---|---|
GO:0030170 | pyridoxal phosphate binding | Yes |
GO:0019346 | transsulfuration | Yes |
GO:0044281 | small molecule metabolic process | No |
GO:0019842 | vitamin binding | No |
GO:0036094 | small molecule binding | No |
GO:1901605 | alpha-amino acid metabolic process | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0006790 | sulfur compound metabolic process | No |
GO:0005488 | binding | No |
GO:0070279 | vitamin B6 binding | No |
GO:0043167 | ion binding | No |
GO:0006520 | cellular amino acid metabolic process | No |
GO:1901564 | organonitrogen compound metabolic process | No |
GO:0071704 | organic substance metabolic process | No |
GO:0008150 | biological_process | No |
GO:0043168 | anion binding | No |
GO:0009069 | serine family amino acid metabolic process | No |
GO:0044237 | cellular metabolic process | No |
GO:0097159 | organic cyclic compound binding | No |
GO:0009092 | homoserine metabolic process | No |
GO:0008152 | metabolic process | No |
GO:0000096 | sulfur amino acid metabolic process | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0003674 | molecular_function | No |
GO:0043436 | oxoacid metabolic process | No |
GO:0050667 | homocysteine metabolic process | No |
GO:0044238 | primary metabolic process | No |
GO:0019752 | carboxylic acid metabolic process | No |
GO:0006082 | organic acid metabolic process | No |
GO:0006534 | cysteine metabolic process | No |
GO:0009987 | cellular process | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 11 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
Casing | Casing mycelium | 66.31 | 39.35 | 93.28 |
Initials | Initials knots | 43.31 | 25.32 | 61.30 |
Pileal_Stipeal_center | Stage I stipe center | 45.89 | 26.95 | 64.83 |
Pileal_Stipeal_shell | Stage I stipe shell | 126.70 | 74.89 | 178.51 |
DIF_stipe_center | Stage II stipe center | 13.74 | 7.01 | 20.46 |
DIF_stipe_shell | Stage II stipe shell | 13.70 | 6.99 | 20.42 |
DIF_stipe_skin | Stage II stipe skin | 46.95 | 27.21 | 66.68 |
DIF_cap_skin | Stage II cap skin | 106.25 | 62.55 | 149.95 |
DIF_cap_tissue | Stage II cap tissue | 46.83 | 27.37 | 66.29 |
DIF_gill_tissue | Stage II gill tissue | 48.44 | 27.77 | 69.11 |
YFB_stipe_center | Young fruiting body stipe center | 13.89 | 6.98 | 20.80 |
YFB_stipe_shell | Young fruiting body stipe shell | 12.32 | 6.19 | 18.46 |
YFB_stipe_skin | Young fruiting body stipe skin | 27.72 | 15.24 | 40.21 |
YFB_cap_skin | Young fruiting body cap skin | 77.79 | 45.74 | 109.84 |
YFB_cap_tissue | Young fruiting body cap tissue | 7.74 | 3.23 | 12.24 |
YFB_gill_tissue | Young fruiting body gill tissue | 108.50 | 60.96 | 156.03 |
YFB_veil | Young fruiting body veil | 65.64 | 38.86 | 92.41 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
Casing | DIF_gill_tissue | 0.351323 | no |
Casing | YFB_stipe_center | 0.000613 | yes |
Casing | YFB_stipe_shell | 0.000613 | yes |
Casing | YFB_stipe_skin | 0.000613 | yes |
Casing | YFB_cap_skin | 0.694930 | no |
Casing | YFB_cap_tissue | 0.000613 | yes |
Casing | YFB_gill_tissue | 0.093007 | no |
Casing | YFB_veil | 0.984774 | no |
Casing | Initials | 0.145929 | no |
Casing | Pileal_Stipeal_center | 0.226375 | no |
Casing | Pileal_Stipeal_shell | 0.009446 | yes |
Casing | DIF_stipe_center | 0.000613 | yes |
Casing | DIF_stipe_shell | 0.000613 | yes |
Casing | DIF_stipe_skin | 0.279565 | no |
Casing | DIF_cap_skin | 0.091161 | no |
Casing | DIF_cap_tissue | 0.267865 | no |
DIF_gill_tissue | YFB_stipe_center | 0.000613 | yes |
DIF_gill_tissue | YFB_stipe_shell | 0.000613 | yes |
DIF_gill_tissue | YFB_stipe_skin | 0.058926 | no |
DIF_gill_tissue | YFB_cap_skin | 0.103956 | no |
DIF_gill_tissue | YFB_cap_tissue | 0.000613 | yes |
DIF_gill_tissue | YFB_gill_tissue | 0.003765 | yes |
DIF_gill_tissue | YFB_veil | 0.369453 | no |
YFB_stipe_center | YFB_stipe_shell | 0.831290 | no |
YFB_stipe_center | YFB_stipe_skin | 0.022369 | yes |
YFB_stipe_center | YFB_cap_skin | 0.000613 | yes |
YFB_stipe_center | YFB_cap_tissue | 0.118244 | no |
YFB_stipe_center | YFB_gill_tissue | 0.000613 | yes |
YFB_stipe_center | YFB_veil | 0.000613 | yes |
YFB_stipe_shell | YFB_stipe_skin | 0.009773 | yes |
YFB_stipe_shell | YFB_cap_skin | 0.000613 | yes |
YFB_stipe_shell | YFB_cap_tissue | 0.257773 | no |
YFB_stipe_shell | YFB_gill_tissue | 0.000613 | yes |
YFB_stipe_shell | YFB_veil | 0.000613 | yes |
YFB_stipe_skin | YFB_cap_skin | 0.000613 | yes |
YFB_stipe_skin | YFB_cap_tissue | 0.000613 | yes |
YFB_stipe_skin | YFB_gill_tissue | 0.000613 | yes |
YFB_stipe_skin | YFB_veil | 0.002084 | yes |
YFB_cap_skin | YFB_cap_tissue | 0.000613 | yes |
YFB_cap_skin | YFB_gill_tissue | 0.306815 | no |
YFB_cap_skin | YFB_veil | 0.663855 | no |
YFB_cap_tissue | YFB_gill_tissue | 0.000613 | yes |
YFB_cap_tissue | YFB_veil | 0.000613 | yes |
YFB_gill_tissue | YFB_veil | 0.076984 | no |
Initials | DIF_gill_tissue | 0.814453 | no |
Initials | YFB_stipe_center | 0.000613 | yes |
Initials | YFB_stipe_shell | 0.000613 | yes |
Initials | YFB_stipe_skin | 0.145790 | no |
Initials | YFB_cap_skin | 0.030851 | yes |
Initials | YFB_cap_tissue | 0.000613 | yes |
Initials | YFB_gill_tissue | 0.000613 | yes |
Initials | YFB_veil | 0.150844 | no |
Initials | Pileal_Stipeal_center | 0.912975 | no |
Initials | Pileal_Stipeal_shell | 0.000613 | yes |
Initials | DIF_stipe_center | 0.000613 | yes |
Initials | DIF_stipe_shell | 0.000613 | yes |
Initials | DIF_stipe_skin | 0.874132 | no |
Initials | DIF_cap_skin | 0.000613 | yes |
Initials | DIF_cap_tissue | 0.877773 | no |
Pileal_Stipeal_center | DIF_gill_tissue | 0.921595 | no |
Pileal_Stipeal_center | YFB_stipe_center | 0.000613 | yes |
Pileal_Stipeal_center | YFB_stipe_shell | 0.000613 | yes |
Pileal_Stipeal_center | YFB_stipe_skin | 0.092165 | no |
Pileal_Stipeal_center | YFB_cap_skin | 0.059121 | no |
Pileal_Stipeal_center | YFB_cap_tissue | 0.000613 | yes |
Pileal_Stipeal_center | YFB_gill_tissue | 0.000613 | yes |
Pileal_Stipeal_center | YFB_veil | 0.247368 | no |
Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.000613 | yes |
Pileal_Stipeal_center | DIF_stipe_center | 0.000613 | yes |
Pileal_Stipeal_center | DIF_stipe_shell | 0.000613 | yes |
Pileal_Stipeal_center | DIF_stipe_skin | 0.968979 | no |
Pileal_Stipeal_center | DIF_cap_skin | 0.000613 | yes |
Pileal_Stipeal_center | DIF_cap_tissue | 0.971104 | no |
Pileal_Stipeal_shell | DIF_gill_tissue | 0.000613 | yes |
Pileal_Stipeal_shell | YFB_stipe_center | 0.000613 | yes |
Pileal_Stipeal_shell | YFB_stipe_shell | 0.000613 | yes |
Pileal_Stipeal_shell | YFB_stipe_skin | 0.000613 | yes |
Pileal_Stipeal_shell | YFB_cap_skin | 0.073760 | no |
Pileal_Stipeal_shell | YFB_cap_tissue | 0.000613 | yes |
Pileal_Stipeal_shell | YFB_gill_tissue | 0.719565 | no |
Pileal_Stipeal_shell | YFB_veil | 0.008791 | yes |
Pileal_Stipeal_shell | DIF_stipe_center | 0.000613 | yes |
Pileal_Stipeal_shell | DIF_stipe_shell | 0.000613 | yes |
Pileal_Stipeal_shell | DIF_stipe_skin | 0.000613 | yes |
Pileal_Stipeal_shell | DIF_cap_skin | 0.650960 | no |
Pileal_Stipeal_shell | DIF_cap_tissue | 0.000613 | yes |
DIF_stipe_center | DIF_gill_tissue | 0.000613 | yes |
DIF_stipe_center | YFB_stipe_center | 0.986598 | no |
DIF_stipe_center | YFB_stipe_shell | 0.852882 | no |
DIF_stipe_center | YFB_stipe_skin | 0.021056 | yes |
DIF_stipe_center | YFB_cap_skin | 0.000613 | yes |
DIF_stipe_center | YFB_cap_tissue | 0.134423 | no |
DIF_stipe_center | YFB_gill_tissue | 0.000613 | yes |
DIF_stipe_center | YFB_veil | 0.000613 | yes |
DIF_stipe_center | DIF_stipe_shell | 0.996750 | no |
DIF_stipe_center | DIF_stipe_skin | 0.000613 | yes |
DIF_stipe_center | DIF_cap_skin | 0.000613 | yes |
DIF_stipe_center | DIF_cap_tissue | 0.000613 | yes |
DIF_stipe_shell | DIF_gill_tissue | 0.000613 | yes |
DIF_stipe_shell | YFB_stipe_center | 0.983532 | no |
DIF_stipe_shell | YFB_stipe_shell | 0.855516 | no |
DIF_stipe_shell | YFB_stipe_skin | 0.019987 | yes |
DIF_stipe_shell | YFB_cap_skin | 0.000613 | yes |
DIF_stipe_shell | YFB_cap_tissue | 0.130530 | no |
DIF_stipe_shell | YFB_gill_tissue | 0.000613 | yes |
DIF_stipe_shell | YFB_veil | 0.000613 | yes |
DIF_stipe_shell | DIF_stipe_skin | 0.000613 | yes |
DIF_stipe_shell | DIF_cap_skin | 0.000613 | yes |
DIF_stipe_shell | DIF_cap_tissue | 0.000613 | yes |
DIF_stipe_skin | DIF_gill_tissue | 0.957727 | no |
DIF_stipe_skin | YFB_stipe_center | 0.000613 | yes |
DIF_stipe_skin | YFB_stipe_shell | 0.000613 | yes |
DIF_stipe_skin | YFB_stipe_skin | 0.078057 | no |
DIF_stipe_skin | YFB_cap_skin | 0.075016 | no |
DIF_stipe_skin | YFB_cap_tissue | 0.000613 | yes |
DIF_stipe_skin | YFB_gill_tissue | 0.001625 | yes |
DIF_stipe_skin | YFB_veil | 0.300595 | no |
DIF_stipe_skin | DIF_cap_skin | 0.001625 | yes |
DIF_stipe_skin | DIF_cap_tissue | 0.995917 | no |
DIF_cap_skin | DIF_gill_tissue | 0.004160 | yes |
DIF_cap_skin | YFB_stipe_center | 0.000613 | yes |
DIF_cap_skin | YFB_stipe_shell | 0.000613 | yes |
DIF_cap_skin | YFB_stipe_skin | 0.000613 | yes |
DIF_cap_skin | YFB_cap_skin | 0.317243 | no |
DIF_cap_skin | YFB_cap_tissue | 0.000613 | yes |
DIF_cap_skin | YFB_gill_tissue | 0.971030 | no |
DIF_cap_skin | YFB_veil | 0.077517 | no |
DIF_cap_skin | DIF_cap_tissue | 0.001140 | yes |
DIF_cap_tissue | DIF_gill_tissue | 0.954270 | no |
DIF_cap_tissue | YFB_stipe_center | 0.000613 | yes |
DIF_cap_tissue | YFB_stipe_shell | 0.000613 | yes |
DIF_cap_tissue | YFB_stipe_skin | 0.081756 | no |
DIF_cap_tissue | YFB_cap_skin | 0.076626 | no |
DIF_cap_tissue | YFB_cap_tissue | 0.000613 | yes |
DIF_cap_tissue | YFB_gill_tissue | 0.000613 | yes |
DIF_cap_tissue | YFB_veil | 0.289287 | no |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >AgabiH97|019800 MKEKLFLSPSMKKTQLSGTDLIHGDHTFSYYKGAGGPVAPPISVSATFRSPHPDENATHYTKMNNRNPERHLYSR YTQDVSTRAEHILSKILNGYAITYTSGVNAAFAALMQYHPKRIAFREIYLGCLVGIEIYRKSRPEVELVDLDADF KPGDLCWVETPSNPEGESKDIQYYADKVHKAGGKLIVDSTFGPPPLQDPFQFGADCVMHSGTKYLGGHSDLLCGV LVVKTAEEWNELHHTRTYTGNVMGSLESWLLLRSLKTLHLRVARQSESATALAQWLRNLSKTPKDQVFDGVPGGV VTKVWHSSLQEADARGFHPKNQMTGGFNATFSIEVANTKIASKLPHELKYFVPATSLGAVESLVEYRADTDSRVN PKLVRFSIGVEELEDLKADLRQAFQKLGSAQAKL* |
Coding | >AgabiH97|019800 ATGAAGGAGAAACTCTTTCTCTCACCATCAATGAAGAAAACTCAGCTGAGCGGAACGGACCTTATTCATGGGGAC CACACATTCTCCTACTACAAGGGCGCGGGCGGCCCTGTTGCTCCACCTATCTCAGTCTCTGCCACTTTCAGGTCA CCACATCCAGATGAAAACGCTACTCATTATACGAAAATGAACAATCGGAATCCTGAAAGACATTTGTATTCTCGT TATACTCAAGATGTTTCCACTAGAGCGGAGCATATCTTGAGCAAAATCTTGAATGGTTACGCAATAACATACACA TCGGGTGTAAACGCCGCGTTCGCCGCTTTGATGCAATATCATCCAAAGCGCATTGCTTTCCGAGAAATTTATTTG GGTTGCCTCGTTGGGATCGAGATTTATCGAAAGTCGAGACCAGAAGTCGAGCTCGTTGACTTGGATGCTGATTTC AAGCCTGGAGATCTTTGCTGGGTTGAAACTCCAAGTAACCCTGAGGGGGAATCCAAAGATATTCAATACTATGCC GACAAGGTTCATAAAGCTGGCGGAAAACTGATCGTAGATTCGACATTTGGTCCTCCCCCTCTCCAAGATCCATTC CAATTTGGAGCCGACTGTGTCATGCACTCTGGTACAAAATATCTCGGCGGCCATTCTGATTTACTCTGCGGAGTT CTGGTCGTGAAGACTGCTGAAGAATGGAATGAGTTACATCACACTCGTACATACACAGGAAATGTCATGGGTTCA TTAGAATCATGGCTTCTTTTGCGTTCTCTCAAGACTTTGCATTTACGCGTCGCTCGCCAATCCGAGAGTGCTACA GCTCTCGCGCAATGGCTACGAAACCTGTCGAAGACACCGAAAGATCAGGTCTTTGACGGTGTTCCTGGAGGTGTA GTGACCAAAGTATGGCATTCTTCTCTTCAAGAAGCCGATGCCCGTGGTTTCCATCCCAAAAACCAAATGACTGGT GGATTCAATGCGACATTTTCTATTGAAGTTGCGAATACTAAGATCGCTTCAAAACTGCCCCATGAACTCAAATAT TTCGTGCCAGCGACAAGTCTCGGCGCCGTTGAGTCGCTCGTGGAGTACAGGGCGGACACAGACTCGAGGGTAAAT CCTAAACTCGTTAGGTTCAGTATTGGTGTCGAGGAACTAGAGGATTTGAAAGCAGATTTACGTCAAGCTTTCCAG AAGTTGGGAAGTGCACAAGCCAAACTATGA |
Transcript | >AgabiH97|019800 ATGAAGGAGAAACTCTTTCTCTCACCATCAATGAAGAAAACTCAGCTGAGCGGAACGGACCTTATTCATGGGGAC CACACATTCTCCTACTACAAGGGCGCGGGCGGCCCTGTTGCTCCACCTATCTCAGTCTCTGCCACTTTCAGGTCA CCACATCCAGATGAAAACGCTACTCATTATACGAAAATGAACAATCGGAATCCTGAAAGACATTTGTATTCTCGT TATACTCAAGATGTTTCCACTAGAGCGGAGCATATCTTGAGCAAAATCTTGAATGGTTACGCAATAACATACACA TCGGGTGTAAACGCCGCGTTCGCCGCTTTGATGCAATATCATCCAAAGCGCATTGCTTTCCGAGAAATTTATTTG GGTTGCCTCGTTGGGATCGAGATTTATCGAAAGTCGAGACCAGAAGTCGAGCTCGTTGACTTGGATGCTGATTTC AAGCCTGGAGATCTTTGCTGGGTTGAAACTCCAAGTAACCCTGAGGGGGAATCCAAAGATATTCAATACTATGCC GACAAGGTTCATAAAGCTGGCGGAAAACTGATCGTAGATTCGACATTTGGTCCTCCCCCTCTCCAAGATCCATTC CAATTTGGAGCCGACTGTGTCATGCACTCTGGTACAAAATATCTCGGCGGCCATTCTGATTTACTCTGCGGAGTT CTGGTCGTGAAGACTGCTGAAGAATGGAATGAGTTACATCACACTCGTACATACACAGGAAATGTCATGGGTTCA TTAGAATCATGGCTTCTTTTGCGTTCTCTCAAGACTTTGCATTTACGCGTCGCTCGCCAATCCGAGAGTGCTACA GCTCTCGCGCAATGGCTACGAAACCTGTCGAAGACACCGAAAGATCAGGTCTTTGACGGTGTTCCTGGAGGTGTA GTGACCAAAGTATGGCATTCTTCTCTTCAAGAAGCCGATGCCCGTGGTTTCCATCCCAAAAACCAAATGACTGGT GGATTCAATGCGACATTTTCTATTGAAGTTGCGAATACTAAGATCGCTTCAAAACTGCCCCATGAACTCAAATAT TTCGTGCCAGCGACAAGTCTCGGCGCCGTTGAGTCGCTCGTGGAGTACAGGGCGGACACAGACTCGAGGGTAAAT CCTAAACTCGTTAGGTTCAGTATTGGTGTCGAGGAACTAGAGGATTTGAAAGCAGATTTACGTCAAGCTTTCCAG AAGTTGGGAAGTGCACAAGCCAAACTATGA |
Gene | >AgabiH97|019800 ATGAAGGAGAAACTCTTTCTCTCACCATCAGTAAGAATCGTGCTCGCACTTTTGTTTCTTCTTGAAAAGCTCTGC TTTTACTGAATAAGTGCTCTTAGATGAAGAAAACTCAGCTGAGCGGAACGGACCTTATTCATGGGGACCACACAT TCTCCTACTACAAGGGCGCGGGCGGCCCTGTTGCTCCACCTATCTCAGTCTCTGCCAGTGAGTTTCTTAGAGCCT GGCATTGATTAGAGCTATTAACGATTCTTGTTTCATGCAGCTTTCAGGTCACCACATCCAGATGAAAACGCTACT CATTATACGAAAATGAACAATCGGAATCCTGAAAGACATTTGTATTCTCGTTATACTCAAGATGTTTCCACTAGA GCGGAGCATATCTTGAGCAAAATCTTGGTACAGTTTCTAAGCTTGCCCAACGTCGTAATTCTCATCAGTATTTTG CCCTGAAGAATGGTTACGCAATAACATACACATCGGGTGTAAACGCCGCGTTCGCCGTAAGTTTTTGTGTGCTTT CCAACCATCGCAATTAACAACTAGCTCTTTATTTACCAGGCTTTGATGCAATATCATCCAAAGCGCATTGCTTTC CGAGAAATTTATTTGGGTTGCCTCGTTGGGATCGAGATTTATCGAAAGTCGAGACCAGAAGTCGAGCTCGTTGAC TTGGATGCTGATTTCAAGCCTGGAGATCTTTGCTGGGTTGAAACTCCAAGTAACCCTGAGGGGGAATCCAAGTAT GCTTGCTTGTTGTTTATAGACTGATCTAACGATACTGAATTAGAGATATTCAATACTATGCCGACAAGGTTTGTT GTAGAAAACTACTCTACATCTCAGCCGCTTATCGATCTTCGGGTGCAGGTTCATAAAGCTGGCGGAAAACTGATC GTAGATTCGACATTTGGTCCTCCCCCTCTCCAAGATCCATTCCAATTTGGAGCCGACTGGTAAGTTACTAATTTC ATACGTTCATAAGACACTATCTAAAATCGTTCCAGTGTCATGCACTCTGGTAAGTTAAACGAATTGAAGTGCTGC CCATACTTGTATTTAGACGGACAAAGGTACAAAATATCTCGGCGGCCATTCTGATTTACTCTGCGGAGTTCTGGT CGTGAAGACTGCTGAAGAATGGAATGAGGTAAACCATTTTCGGTCTCTCAATGCATAGCCGTTTCAAATAACACG ACACAGTTACATCACACTCGTACATACACAGGAAATGTCATGGGTTCATTAGAATCATGGCTTCTTTTGCGTTCT CTCAAGACTTTGCATTTACGCGTCGCTCGCCAATCCGAGAGTGCTACAGCTCTCGCGCAATGGCTACGAAACCTG TCGAAGACACCGAAAGATCAGGTCTTTGACGGTGTTCCTGGAGGTGTAGTGACCAAAGTATGGCATTCTTCTCTT CAAGAAGCCGATGCCCGTGGTTTCCATCCCAAAAACCAAATGACTGGTGGATTCAATGCGACATTTTCTATTGAA GTTCGTCGATATCACTCTTTCTTGAGTTTTTATGAATCCATCCTCTCATTGTCAGGTTGCGAATACTAAGATCGC TTCAAAACTGCCCCATGAACTCAAATATTTCGTGGTCAGTGGCAGTCTTCTCAATAGCCCTTTGCGGATTGAATA ACCTGACCCGTTGCCTCTGCAGCCAGCGACAAGTCTCGGCGCCGTTGAGTCGCTCGTGGAGTACAGGGCGGACAC AGACTCGAGGGTAAATCCTAAACTCGTTAGGTTCAGTATTGGTGTCGAGGAACTAGAGGTTAGTTGATTGACCGC AGCTGCTTCATTCATGGACTCTGCTGATTACCCGCGCAATTGACACTGTTAGGATTTGAAAGCAGATTTACGTCA AGCTTTCCAGAAGTTGGGAAGTGTAAGTTTATTGACAAATTATGCATTGTGATGTGTCCGAATCACTGACTCTCT CCTAGGCACAAGCCAAACTATGA |