Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|019750
Gene name
Locationscaffold_10:1267435..1268441
Strand+
Gene length (bp)1006
Transcript length (bp)771
Coding sequence length (bp)771
Protein length (aa) 257

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Golgi apparatus Signal peptide|Transmembrane domain 0.1233 0.0974 0.1561 0.344 0.2157 0.0025 0.0632 0.2271 0.3838 0.0078

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 7 29 22
2 44 66 22
3 79 101 22
4 121 143 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Orthologs

Orthofinder run ID1
Orthogroup1245
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|019720
Agaricus bisporus var bisporus H39 AgabiH39|019730
Agaricus bisporus var bisporus H39 AgabiH39|019740
Agaricus bisporus var bisporus H39 AgabiH39|019750
Agaricus bisporus var bisporus H39 AgabiH39|019950
Agaricus bisporus var bisporus H39 AgabiH39|020020
Agaricus bisporus var bisporus H39 AgabiH39|479900
Agaricus bisporus var bisporus H39 AgabiH39|539400
Agaricus bisporus var bisporus H97 AgabiH97|019720
Agaricus bisporus var bisporus H97 AgabiH97|019730
Agaricus bisporus var bisporus H97 AgabiH97|019740
Agaricus bisporus var bisporus H97 AgabiH97|019750 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|019950
Agaricus bisporus var bisporus H97 AgabiH97|020020
Agaricus bisporus var bisporus H97 AgabiH97|020210
Agaricus bisporus var bisporus H97 AgabiH97|034710

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|019750
MMTVVILLFISSTTILGLQLAIVMRNYMYLLQAREDDFQAERRAFILSQAVLLIFQTIVADSVLLFRCWTIWNKM
ILSIVLPLVLWTGCLGSSIYAIYCLYFRIFSGPKPISAEESVYPAYVTFWTCTIIVNIYCTGMIVGRICSVQRGW
RPPSICSLRDLPQRTRLHLAKRIVVESAMMYTAASLSAFITHVCESPAVNITYLAESQVVGIAFNLILIRRSSPT
QDRENELCVKCFNPKTNRSKVDATVGTTGLG*
Coding >AgabiH97|019750
ATGATGACGGTCGTTATCTTACTCTTCATCTCTTCTACAACAATCTTGGGACTCCAGCTCGCTATTGTTATGCGG
AATTACATGTACTTGTTGCAGGCTCGTGAAGACGACTTTCAGGCGGAACGAAGAGCGTTCATTCTTTCACAAGCG
GTCCTGCTGATTTTTCAGACCATTGTTGCAGACAGCGTCTTGCTCTTCAGGTGTTGGACTATCTGGAATAAGATG
ATTCTTTCTATAGTTCTACCCCTGGTTCTTTGGACAGGCTGTCTGGGTTCTAGCATCTACGCTATCTACTGCTTA
TATTTCAGGATCTTCTCGGGCCCGAAACCAATATCTGCTGAGGAAAGTGTTTATCCTGCCTACGTGACATTCTGG
ACTTGCACAATCATAGTAAACATTTACTGCACAGGAATGATTGTAGGGAGAATTTGTTCTGTGCAACGGGGTTGG
AGACCGCCTTCCATATGCTCTTTACGGGATCTACCACAACGAACCCGCTTGCATCTTGCCAAACGTATAGTCGTC
GAGTCGGCCATGATGTATACTGCGGCATCTTTGAGTGCCTTTATCACTCATGTTTGTGAGAGCCCCGCAGTTAAC
ATTACATATCTAGCCGAATCTCAAGTTGTCGGGATTGCTTTCAATTTGATACTTATCAGACGTTCGTCTCCGACG
CAGGACAGAGAAAACGAGTTATGCGTCAAATGCTTTAATCCGAAGACGAACCGCTCGAAGGTTGACGCTACGGTA
GGAACCACCGGACTCGGTTGA
Transcript >AgabiH97|019750
ATGATGACGGTCGTTATCTTACTCTTCATCTCTTCTACAACAATCTTGGGACTCCAGCTCGCTATTGTTATGCGG
AATTACATGTACTTGTTGCAGGCTCGTGAAGACGACTTTCAGGCGGAACGAAGAGCGTTCATTCTTTCACAAGCG
GTCCTGCTGATTTTTCAGACCATTGTTGCAGACAGCGTCTTGCTCTTCAGGTGTTGGACTATCTGGAATAAGATG
ATTCTTTCTATAGTTCTACCCCTGGTTCTTTGGACAGGCTGTCTGGGTTCTAGCATCTACGCTATCTACTGCTTA
TATTTCAGGATCTTCTCGGGCCCGAAACCAATATCTGCTGAGGAAAGTGTTTATCCTGCCTACGTGACATTCTGG
ACTTGCACAATCATAGTAAACATTTACTGCACAGGAATGATTGTAGGGAGAATTTGTTCTGTGCAACGGGGTTGG
AGACCGCCTTCCATATGCTCTTTACGGGATCTACCACAACGAACCCGCTTGCATCTTGCCAAACGTATAGTCGTC
GAGTCGGCCATGATGTATACTGCGGCATCTTTGAGTGCCTTTATCACTCATGTTTGTGAGAGCCCCGCAGTTAAC
ATTACATATCTAGCCGAATCTCAAGTTGTCGGGATTGCTTTCAATTTGATACTTATCAGACGTTCGTCTCCGACG
CAGGACAGAGAAAACGAGTTATGCGTCAAATGCTTTAATCCGAAGACGAACCGCTCGAAGGTTGACGCTACGGTA
GGAACCACCGGACTCGGTTGA
Gene >AgabiH97|019750
ATGATGACGGTCGTTATCTTACTCTTCATCTCTTCTACAACAATCTTGGGACTCCAGCTCGCTATTGTTATGCGG
AATTACATGTACTTGTTGCAGGCTCGTGAAGACGACTTTCAGGCGGAACGAAGAGCGTTCATTCTTTCACAAGTA
AGTTTCCTTTTTCTTTGGCCCGATTGCGAGTGTCGCAGTCAATGCGTTAACGTTAACATCCGGCTGTATTAGGCG
GTCCTGCTGATTTTTCAGACCATTGTTGCAGACAGCGTCTTGGTAAGATTTTGAAGATAAACCTTGGGGGGAAAC
TGACCATTGGGACCATAACTTCAGCTCTTCAGGTGTTGGACTATCTGGAATAAGATGATTCTTTCTATAGTTCTA
CCCCTGGTTCTTTGGACAGGCTGTCTGGGTTCTAGCATCTACGCTATCTACTGCTTATATTTCAGGATCTTCTCG
GGCCCGAAACCAATATCTGCTGAGGAAAGTGTTTATCCTGCCTACGTGACATTCTGGACTTGCACAATCATAGTA
AACATTTACTGCACAGGTAAGCCACCTAGCCTGGATAACGTAACTTCATCATCGATTCACAACCTTGTAGGAATG
ATTGTAGGGAGAATTTGTTCTGTGCAACGGGGTTGGAGACCGCCTTCCATATGCTCTTTACGGGATCTACCACAA
CGAACCCGCTTGCATCTTGCCAAACGTATAGTCGTCGAGTCGGCCATGATGTATACTGCGGCATCTTTGAGTGCC
TTTATCACTCATGTTTGTGAGAGCCCCGCAGTTAACATTACATATCTAGCCGTAGGTCACCCGATTATAGGACCG
ATCACTTTCTTATCATGTTGAACAGGAATCTCAAGTTGTCGGGATTGCTTTCAATTTGATACTTATCAGACGTTC
GTCTCCGACGCAGGACAGAGAAAACGAGTTATGCGTCAAATGCTTTAATCCGAAGACGAACCGCTCGAAGGTTGA
CGCTACGGTAGGAACCACCGGACTCGGTTGA

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