© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | AgabiH97|019730 |
| Gene name | |
| Location | scaffold_10:1262702..1263873 |
| Strand | + |
| Gene length (bp) | 1171 |
| Transcript length (bp) | 888 |
| Coding sequence length (bp) | 888 |
| Protein length (aa) | 296 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 18 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 7 | 29 | 22 |
| 2 | 44 | 66 | 22 |
| 3 | 79 | 101 | 22 |
| 4 | 121 | 143 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 58.86 | 33.17 | 84.54 |
| Initials | Initials knots | 51.25 | 28.89 | 73.62 |
| Pileal_Stipeal_center | Stage I stipe center | 26.77 | 13.64 | 39.90 |
| Pileal_Stipeal_shell | Stage I stipe shell | 20.40 | 10.14 | 30.66 |
| DIF_stipe_center | Stage II stipe center | 14.95 | 7.22 | 22.67 |
| DIF_stipe_shell | Stage II stipe shell | 23.48 | 12.03 | 34.93 |
| DIF_stipe_skin | Stage II stipe skin | 32.20 | 17.28 | 47.13 |
| DIF_cap_skin | Stage II cap skin | 25.63 | 13.17 | 38.08 |
| DIF_cap_tissue | Stage II cap tissue | 19.07 | 9.35 | 28.80 |
| DIF_gill_tissue | Stage II gill tissue | 12.94 | 6.05 | 19.82 |
| YFB_stipe_center | Young fruiting body stipe center | 19.79 | 9.91 | 29.67 |
| YFB_stipe_shell | Young fruiting body stipe shell | 19.23 | 9.64 | 28.82 |
| YFB_stipe_skin | Young fruiting body stipe skin | 30.57 | 16.28 | 44.85 |
| YFB_cap_skin | Young fruiting body cap skin | 27.04 | 14.18 | 39.90 |
| YFB_cap_tissue | Young fruiting body cap tissue | 12.36 | 5.81 | 18.91 |
| YFB_gill_tissue | Young fruiting body gill tissue | 21.29 | 10.56 | 32.03 |
| YFB_veil | Young fruiting body veil | 14.03 | 6.72 | 21.33 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.000613 | yes |
| Casing | YFB_stipe_center | 0.000613 | yes |
| Casing | YFB_stipe_shell | 0.000613 | yes |
| Casing | YFB_stipe_skin | 0.031800 | yes |
| Casing | YFB_cap_skin | 0.008791 | yes |
| Casing | YFB_cap_tissue | 0.000613 | yes |
| Casing | YFB_gill_tissue | 0.000613 | yes |
| Casing | YFB_veil | 0.000613 | yes |
| Casing | Initials | 0.775080 | no |
| Casing | Pileal_Stipeal_center | 0.007782 | yes |
| Casing | Pileal_Stipeal_shell | 0.000613 | yes |
| Casing | DIF_stipe_center | 0.000613 | yes |
| Casing | DIF_stipe_shell | 0.002525 | yes |
| Casing | DIF_stipe_skin | 0.043983 | yes |
| Casing | DIF_cap_skin | 0.006032 | yes |
| Casing | DIF_cap_tissue | 0.000613 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.277790 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.328438 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.005671 | yes |
| DIF_gill_tissue | YFB_cap_skin | 0.021846 | yes |
| DIF_gill_tissue | YFB_cap_tissue | 0.948499 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.190859 | no |
| DIF_gill_tissue | YFB_veil | 0.903717 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.965311 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.241478 | no |
| YFB_stipe_center | YFB_cap_skin | 0.445853 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.215044 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.910530 | no |
| YFB_stipe_center | YFB_veil | 0.414707 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.208451 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.394578 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.261654 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.869625 | no |
| YFB_stipe_shell | YFB_veil | 0.475766 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.819833 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.004160 | yes |
| YFB_stipe_skin | YFB_gill_tissue | 0.356963 | no |
| YFB_stipe_skin | YFB_veil | 0.017507 | yes |
| YFB_cap_skin | YFB_cap_tissue | 0.017226 | yes |
| YFB_cap_skin | YFB_gill_tissue | 0.597205 | no |
| YFB_cap_skin | YFB_veil | 0.050706 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.140560 | no |
| YFB_cap_tissue | YFB_veil | 0.831359 | no |
| YFB_gill_tissue | YFB_veil | 0.299255 | no |
| Initials | DIF_gill_tissue | 0.000613 | yes |
| Initials | YFB_stipe_center | 0.002084 | yes |
| Initials | YFB_stipe_shell | 0.001140 | yes |
| Initials | YFB_stipe_skin | 0.102511 | no |
| Initials | YFB_cap_skin | 0.034142 | yes |
| Initials | YFB_cap_tissue | 0.000613 | yes |
| Initials | YFB_gill_tissue | 0.003765 | yes |
| Initials | YFB_veil | 0.000613 | yes |
| Initials | Pileal_Stipeal_center | 0.032742 | yes |
| Initials | Pileal_Stipeal_shell | 0.002084 | yes |
| Initials | DIF_stipe_center | 0.000613 | yes |
| Initials | DIF_stipe_shell | 0.008457 | yes |
| Initials | DIF_stipe_skin | 0.143621 | no |
| Initials | DIF_cap_skin | 0.021583 | yes |
| Initials | DIF_cap_tissue | 0.000613 | yes |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.027943 | yes |
| Pileal_Stipeal_center | YFB_stipe_center | 0.475023 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.421621 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.807825 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.987837 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.022369 | yes |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.627312 | no |
| Pileal_Stipeal_center | YFB_veil | 0.059318 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.543825 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.096785 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.814305 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.697866 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.947723 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.406596 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.234848 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.965257 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.928403 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.290760 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.511183 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.179826 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.950558 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.365159 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.488553 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.802589 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.201152 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.637550 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.919545 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.811015 | no |
| DIF_stipe_center | YFB_stipe_center | 0.540289 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.598702 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.031088 | yes |
| DIF_stipe_center | YFB_cap_skin | 0.085726 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.725366 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.406363 | no |
| DIF_stipe_center | YFB_veil | 0.928160 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.235485 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.018896 | yes |
| DIF_stipe_center | DIF_cap_skin | 0.138008 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.612598 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.083328 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.742098 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.682919 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.537931 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.788051 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.059906 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.872410 | no |
| DIF_stipe_shell | YFB_veil | 0.156253 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.420283 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.884928 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.667435 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.004548 | yes |
| DIF_stipe_skin | YFB_stipe_center | 0.152056 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.126175 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.931244 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.707900 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.001625 | yes |
| DIF_stipe_skin | YFB_gill_tissue | 0.258723 | no |
| DIF_stipe_skin | YFB_veil | 0.011659 | yes |
| DIF_stipe_skin | DIF_cap_skin | 0.608145 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.119615 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.041386 | yes |
| DIF_cap_skin | YFB_stipe_center | 0.569256 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.512411 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.724644 | no |
| DIF_cap_skin | YFB_cap_skin | 0.931882 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.029890 | yes |
| DIF_cap_skin | YFB_gill_tissue | 0.717176 | no |
| DIF_cap_skin | YFB_veil | 0.082983 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.498235 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.333527 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.956934 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.990418 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.187677 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.368886 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.260285 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.853643 | no |
| DIF_cap_tissue | YFB_veil | 0.481359 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|019730 MTMVVILLFICSTTVLGLQLALVMRSYMYLLQSREDDFETERRAFILSQGVLLIFQTIIADGVLLFRCWTIWNKM ILAIVLPLVLWAGCLGSSVYAIYCLYFRIFTGPKPISTEESVYPAFVTFWTCTIIVNIYCTGMIVGRICSVQQGW RPPSICSLRDLPQRTRLHLAKRIVVESAMIYTAASLGAFISHASESRAVDITYLAESQVVGIAFNLILIRRSSPT QDRESELCVRCFNPKTNRSIADATVGTTDSLDIPDVSLSASEEDNRLERMNIIYRARPHTSSTNSLEEIH* |
| Coding | >AgabiH97|019730 ATGACGATGGTCGTTATCCTCCTTTTCATCTGTTCCACAACTGTCTTGGGACTCCAGCTTGCCCTTGTTATGCGG AGTTATATGTACTTGTTGCAGTCTCGTGAAGACGACTTTGAGACGGAACGAAGAGCGTTCATTCTCTCACAAGGG GTCCTGCTGATTTTTCAGACAATCATTGCAGACGGCGTCTTGCTCTTCAGGTGTTGGACTATCTGGAATAAGATG ATTCTTGCTATAGTTCTACCCCTGGTTCTTTGGGCAGGCTGTCTGGGTTCTAGCGTCTACGCTATTTACTGCTTA TATTTTCGGATCTTCACGGGCCCGAAACCAATATCTACTGAGGAAAGTGTTTATCCAGCCTTCGTGACATTCTGG ACTTGCACAATCATCGTGAACATTTACTGCACAGGAATGATTGTGGGGAGAATTTGTTCCGTGCAACAGGGTTGG AGACCGCCCTCCATATGTTCTTTACGGGATCTACCACAACGAACCCGACTGCATCTTGCCAAACGTATAGTCGTC GAGTCGGCTATGATATATACCGCGGCATCATTGGGCGCCTTTATCAGTCATGCTTCTGAGAGCCGCGCAGTTGAC ATCACATATCTAGCCGAATCTCAAGTTGTCGGGATTGCTTTCAATTTGATACTTATCAGACGTTCGTCTCCGACG CAGGACCGGGAAAGCGAATTATGCGTCAGATGTTTTAATCCGAAGACGAATCGCTCGATAGCTGACGCTACGGTC GGAACCACAGACTCGCTTGATATACCAGATGTGTCATTGAGCGCTAGTGAGGAAGATAACAGATTGGAAAGAATG AATATCATATACCGTGCCAGACCTCATACTAGTTCCACCAACTCGCTCGAAGAAATTCATTGA |
| Transcript | >AgabiH97|019730 ATGACGATGGTCGTTATCCTCCTTTTCATCTGTTCCACAACTGTCTTGGGACTCCAGCTTGCCCTTGTTATGCGG AGTTATATGTACTTGTTGCAGTCTCGTGAAGACGACTTTGAGACGGAACGAAGAGCGTTCATTCTCTCACAAGGG GTCCTGCTGATTTTTCAGACAATCATTGCAGACGGCGTCTTGCTCTTCAGGTGTTGGACTATCTGGAATAAGATG ATTCTTGCTATAGTTCTACCCCTGGTTCTTTGGGCAGGCTGTCTGGGTTCTAGCGTCTACGCTATTTACTGCTTA TATTTTCGGATCTTCACGGGCCCGAAACCAATATCTACTGAGGAAAGTGTTTATCCAGCCTTCGTGACATTCTGG ACTTGCACAATCATCGTGAACATTTACTGCACAGGAATGATTGTGGGGAGAATTTGTTCCGTGCAACAGGGTTGG AGACCGCCCTCCATATGTTCTTTACGGGATCTACCACAACGAACCCGACTGCATCTTGCCAAACGTATAGTCGTC GAGTCGGCTATGATATATACCGCGGCATCATTGGGCGCCTTTATCAGTCATGCTTCTGAGAGCCGCGCAGTTGAC ATCACATATCTAGCCGAATCTCAAGTTGTCGGGATTGCTTTCAATTTGATACTTATCAGACGTTCGTCTCCGACG CAGGACCGGGAAAGCGAATTATGCGTCAGATGTTTTAATCCGAAGACGAATCGCTCGATAGCTGACGCTACGGTC GGAACCACAGACTCGCTTGATATACCAGATGTGTCATTGAGCGCTAGTGAGGAAGATAACAGATTGGAAAGAATG AATATCATATACCGTGCCAGACCTCATACTAGTTCCACCAACTCGCTCGAAGAAATTCATTGA |
| Gene | >AgabiH97|019730 ATGACGATGGTCGTTATCCTCCTTTTCATCTGTTCCACAACTGTCTTGGGACTCCAGCTTGCCCTTGTTATGCGG AGTTATATGTACTTGTTGCAGTCTCGTGAAGACGACTTTGAGACGGAACGAAGAGCGTTCATTCTCTCACAAGTA AGCTTTCCCCTTTTTCTTTGGCCCGATTGCGAGCCTGAGTTGTCGCGGACAATGCGTTAACGTCCAGCCATATTA GGGGGTCCTGCTGATTTTTCAGACAATCATTGCAGACGGCGTCTTGGTAAGACTTTGAATTGATACCTGGGGGAA AAACTGACAATTGGGAACTTCAGCTCTTCAGGTGTTGGACTATCTGGAATAAGATGATTCTTGCTATAGTTCTAC CCCTGGTTCTTTGGGCAGGCTGTCTGGGTTCTAGCGTCTACGCTATTTACTGCTTATATTTTCGGATCTTCACGG GCCCGAAACCAATATCTACTGAGGAAAGTGTTTATCCAGCCTTCGTGACATTCTGGACTTGCACAATCATCGTGA ACATTTACTGCACAGGTAAGCCACCTAACCTGGAAAAACGTAACTTTATCATCGACTTACAATTTTGTAGGAATG ATTGTGGGGAGAATTTGTTCCGTGCAACAGGGTTGGAGACCGCCCTCCATATGTTCTTTACGGGATCTACCACAA CGAACCCGACTGCATCTTGCCAAACGTATAGTCGTCGAGTCGGCTATGATATATACCGCGGCATCATTGGGCGCC TTTATCAGTCATGCTTCTGAGAGCCGCGCAGTTGACATCACATATCTAGCCGTAGGTCACCCGGTTGTAGGACCG ATCACTCTCTTATCATGTTGAACAGGAATCTCAAGTTGTCGGGATTGCTTTCAATTTGATACTTATCAGACGTTC GTCTCCGACGCAGGACCGGGAAAGCGAATTATGCGTCAGATGTTTTAATCCGAAGACGAATCGCTCGATAGCTGA CGCTACGGTCGGAACCACAGACTCGCTTGATATACCAGATGTGTCATTGAGCGCTAGTGAGGAAGATAACAGATT GGAAAGAATGAATATCATATACCGTGCCAGACCTCATACTAGGTGTATTGTATCACTTAATCAGAATTGTTCATA GTCCGGTTATTGTAGTTCCACCAACTCGCTCGAAGAAATTCATTGA |