Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|019720
Gene name
Locationscaffold_10:1260762..1261968
Strand+
Gene length (bp)1206
Transcript length (bp)978
Coding sequence length (bp)978
Protein length (aa) 326

Overview

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PFAM Domains

(None)

Swissprot hits

(None)

GO

(None)

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cell membrane Signal peptide|Transmembrane domain 0.1318 0.0904 0.1613 0.3541 0.1705 0.002 0.0608 0.1705 0.2858 0.006

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 10 31 21
2 52 74 22
3 94 116 22
4 129 151 22
5 171 193 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

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Orthologs

Orthofinder run ID1
Orthogroup1245
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|019720
Agaricus bisporus var bisporus H39 AgabiH39|019730
Agaricus bisporus var bisporus H39 AgabiH39|019740
Agaricus bisporus var bisporus H39 AgabiH39|019750
Agaricus bisporus var bisporus H39 AgabiH39|019950
Agaricus bisporus var bisporus H39 AgabiH39|020020
Agaricus bisporus var bisporus H39 AgabiH39|479900
Agaricus bisporus var bisporus H39 AgabiH39|539400
Agaricus bisporus var bisporus H97 AgabiH97|019720 (this protein)
Agaricus bisporus var bisporus H97 AgabiH97|019730
Agaricus bisporus var bisporus H97 AgabiH97|019740
Agaricus bisporus var bisporus H97 AgabiH97|019750
Agaricus bisporus var bisporus H97 AgabiH97|019950
Agaricus bisporus var bisporus H97 AgabiH97|020020
Agaricus bisporus var bisporus H97 AgabiH97|020210
Agaricus bisporus var bisporus H97 AgabiH97|034710

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|019720
MGLSTSEARLPALMLTSVLYGFNLITFFLSLQRLFRGRDEKRVSRGIHFPMTTIVILLFISSTIILGTQLALVMR
SYMYLSRPRPVDFQTEQRAIMLLQAVLLIFQTIIADSVLLFRCWIIWNKMILVIVLPLVLWTGCLGSSLYAIYCL
YSRMFSHPTPIAAVEGLYPAYVAFWTCTIIVNIYCTGMIVGRICSVQRGWRPPSICSLQDLPQRIRLHLAKRIVV
ESAMMYTAASLSAFITHACESRAVDITYLAESQIVGIAFNLILIRRSPSPKHDRESELCVRCLNPKTNRSIADAT
VGTTDSVDIPDTSSSANEGITDWKE*
Coding >AgabiH97|019720
ATGGGTCTTTCTACCTCCGAGGCTCGACTACCAGCGCTTATGCTTACATCCGTGTTATATGGCTTCAACTTGATT
ACGTTCTTTCTAAGTCTTCAACGACTTTTTAGAGGGAGAGACGAGAAACGTGTCAGTCGGGGCATTCACTTCCCA
ATGACGACGATCGTTATCCTCCTCTTCATCTCTTCTACAATAATATTGGGAACACAGCTCGCTCTTGTTATGCGG
AGTTATATGTACTTGTCGCGGCCTCGTCCAGTCGACTTTCAAACGGAACAAAGAGCGATCATGCTTTTACAAGCG
GTCCTGCTGATTTTTCAGACAATTATTGCAGACAGCGTCCTGCTCTTCAGGTGCTGGATTATCTGGAATAAGATG
ATTCTCGTTATAGTCCTACCCCTGGTTCTTTGGACAGGCTGTCTGGGTTCTAGTCTCTACGCTATCTACTGCTTA
TATTCTCGGATGTTTTCGCACCCGACACCAATAGCTGCTGTAGAAGGGCTTTATCCAGCCTACGTGGCATTCTGG
ACGTGCACAATCATAGTGAACATTTACTGCACAGGAATGATTGTAGGGAGAATTTGTTCTGTGCAACGGGGTTGG
AGACCGCCCTCGATATGTTCTTTACAGGATCTACCGCAACGAATTCGATTGCATCTTGCCAAACGTATAGTCGTC
GAGTCAGCAATGATGTATACCGCGGCATCTTTGAGTGCCTTTATCACTCATGCTTGTGAGAGCCGCGCAGTTGAC
ATCACATATCTAGCTGAATCTCAAATTGTCGGAATTGCCTTCAATTTGATACTTATCAGGCGTTCGCCGTCTCCG
AAGCATGACCGAGAAAGCGAGTTATGCGTCAGGTGCTTAAATCCGAAGACAAACCGCTCGATAGCGGACGCTACG
GTCGGAACCACAGACTCGGTTGATATACCAGATACGTCGTCGAGCGCCAATGAGGGGATAACAGATTGGAAAGAA
TGA
Transcript >AgabiH97|019720
ATGGGTCTTTCTACCTCCGAGGCTCGACTACCAGCGCTTATGCTTACATCCGTGTTATATGGCTTCAACTTGATT
ACGTTCTTTCTAAGTCTTCAACGACTTTTTAGAGGGAGAGACGAGAAACGTGTCAGTCGGGGCATTCACTTCCCA
ATGACGACGATCGTTATCCTCCTCTTCATCTCTTCTACAATAATATTGGGAACACAGCTCGCTCTTGTTATGCGG
AGTTATATGTACTTGTCGCGGCCTCGTCCAGTCGACTTTCAAACGGAACAAAGAGCGATCATGCTTTTACAAGCG
GTCCTGCTGATTTTTCAGACAATTATTGCAGACAGCGTCCTGCTCTTCAGGTGCTGGATTATCTGGAATAAGATG
ATTCTCGTTATAGTCCTACCCCTGGTTCTTTGGACAGGCTGTCTGGGTTCTAGTCTCTACGCTATCTACTGCTTA
TATTCTCGGATGTTTTCGCACCCGACACCAATAGCTGCTGTAGAAGGGCTTTATCCAGCCTACGTGGCATTCTGG
ACGTGCACAATCATAGTGAACATTTACTGCACAGGAATGATTGTAGGGAGAATTTGTTCTGTGCAACGGGGTTGG
AGACCGCCCTCGATATGTTCTTTACAGGATCTACCGCAACGAATTCGATTGCATCTTGCCAAACGTATAGTCGTC
GAGTCAGCAATGATGTATACCGCGGCATCTTTGAGTGCCTTTATCACTCATGCTTGTGAGAGCCGCGCAGTTGAC
ATCACATATCTAGCTGAATCTCAAATTGTCGGAATTGCCTTCAATTTGATACTTATCAGGCGTTCGCCGTCTCCG
AAGCATGACCGAGAAAGCGAGTTATGCGTCAGGTGCTTAAATCCGAAGACAAACCGCTCGATAGCGGACGCTACG
GTCGGAACCACAGACTCGGTTGATATACCAGATACGTCGTCGAGCGCCAATGAGGGGATAACAGATTGGAAAGAA
TGA
Gene >AgabiH97|019720
ATGGGTCTTTCTACCTCCGAGGCTCGACTACCAGCGCTTATGCTTACATCCGTGTTATATGGCTTCAACTTGATT
ACGTTCTTTCTAAGTCTTCAACGACTTTTTAGAGGGAGAGACGAGAAACGTGTCAGTCGGGGCATTCACTTCCCA
ATGACGACGATCGTTATCCTCCTCTTCATCTCTTCTACAATAATATTGGGAACACAGCTCGCTCTTGTTATGCGG
AGTTATATGTACTTGTCGCGGCCTCGTCCAGTCGACTTTCAAACGGAACAAAGAGCGATCATGCTTTTACAAGTA
AGTTTCCCCTTTTTTTTGGCCCGATTGCCGGTGTCACAGTCAATACGTTAACATCTAGCCATATTAGGCGGTCCT
GCTGATTTTTCAGACAATTATTGCAGACAGCGTCCTGGTAAGGTTGTGAAGGAATACCTCGGGAAAACACTGACA
ATTGGGTCCGTAACCTCAGCTCTTCAGGTGCTGGATTATCTGGAATAAGATGATTCTCGTTATAGTCCTACCCCT
GGTTCTTTGGACAGGCTGTCTGGGTTCTAGTCTCTACGCTATCTACTGCTTATATTCTCGGATGTTTTCGCACCC
GACACCAATAGCTGCTGTAGAAGGGCTTTATCCAGCCTACGTGGCATTCTGGACGTGCACAATCATAGTGAACAT
TTACTGCACAGGTAGGTCACCTATTCTGGAAAACGTAACATTATGCGATTTACAATCTTGTAGGAATGATTGTAG
GGAGAATTTGTTCTGTGCAACGGGGTTGGAGACCGCCCTCGATATGTTCTTTACAGGATCTACCGCAACGAATTC
GATTGCATCTTGCCAAACGTATAGTCGTCGAGTCAGCAATGATGTATACCGCGGCATCTTTGAGTGCCTTTATCA
CTCATGCTTGTGAGAGCCGCGCAGTTGACATCACATATCTAGCTGTAGGTCATCCGATTGTAAGACCGATCACGT
TCTTATTATGTTGAACAGGAATCTCAAATTGTCGGAATTGCCTTCAATTTGATACTTATCAGGCGTTCGCCGTCT
CCGAAGCATGACCGAGAAAGCGAGTTATGCGTCAGGTGCTTAAATCCGAAGACAAACCGCTCGATAGCGGACGCT
ACGGTCGGAACCACAGACTCGGTTGATATACCAGATACGTCGTCGAGCGCCAATGAGGGGATAACAGATTGGAAA
GAATGA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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