© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | AgabiH97|019330 |
| Gene name | |
| Location | scaffold_10:1165098..1166217 |
| Strand | + |
| Gene length (bp) | 1119 |
| Transcript length (bp) | 768 |
| Coding sequence length (bp) | 768 |
| Protein length (aa) | 256 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00722 | Glyco_hydro_16 | Glycosyl hydrolases family 16 | 1.7E-05 | 120 | 162 |
| Swissprot ID | Swissprot Description | Start | End | E-value |
|---|---|---|---|---|
| sp|F7J1C8|E3GAL_FLAVE | Galactan endo-beta-1,3-galactanase OS=Flammulina velutipes GN=EN3GAL PE=1 SV=1 | 18 | 254 | 7.0E-112 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0008150 | biological_process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| Casing | Casing mycelium | 39.94 | 19.36 | 60.52 |
| Initials | Initials knots | 11.70 | 5.32 | 18.07 |
| Pileal_Stipeal_center | Stage I stipe center | 14.12 | 6.60 | 21.65 |
| Pileal_Stipeal_shell | Stage I stipe shell | 15.37 | 7.27 | 23.46 |
| DIF_stipe_center | Stage II stipe center | 10.62 | 4.75 | 16.49 |
| DIF_stipe_shell | Stage II stipe shell | 14.74 | 6.94 | 22.54 |
| DIF_stipe_skin | Stage II stipe skin | 15.49 | 7.35 | 23.63 |
| DIF_cap_skin | Stage II cap skin | 17.43 | 8.41 | 26.46 |
| DIF_cap_tissue | Stage II cap tissue | 15.87 | 7.53 | 24.21 |
| DIF_gill_tissue | Stage II gill tissue | 15.59 | 7.37 | 23.81 |
| YFB_stipe_center | Young fruiting body stipe center | 10.54 | 4.70 | 16.38 |
| YFB_stipe_shell | Young fruiting body stipe shell | 13.21 | 6.07 | 20.35 |
| YFB_stipe_skin | Young fruiting body stipe skin | 16.05 | 7.66 | 24.44 |
| YFB_cap_skin | Young fruiting body cap skin | 14.83 | 6.98 | 22.69 |
| YFB_cap_tissue | Young fruiting body cap tissue | 17.02 | 8.12 | 25.92 |
| YFB_gill_tissue | Young fruiting body gill tissue | 13.74 | 6.42 | 21.06 |
| YFB_veil | Young fruiting body veil | 15.15 | 7.17 | 23.13 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| Casing | DIF_gill_tissue | 0.003365 | yes |
| Casing | YFB_stipe_center | 0.000613 | yes |
| Casing | YFB_stipe_shell | 0.000613 | yes |
| Casing | YFB_stipe_skin | 0.004928 | yes |
| Casing | YFB_cap_skin | 0.002084 | yes |
| Casing | YFB_cap_tissue | 0.009773 | yes |
| Casing | YFB_gill_tissue | 0.000613 | yes |
| Casing | YFB_veil | 0.002084 | yes |
| Casing | Initials | 0.000613 | yes |
| Casing | Pileal_Stipeal_center | 0.000613 | yes |
| Casing | Pileal_Stipeal_shell | 0.003365 | yes |
| Casing | DIF_stipe_center | 0.000613 | yes |
| Casing | DIF_stipe_shell | 0.001140 | yes |
| Casing | DIF_stipe_skin | 0.004548 | yes |
| Casing | DIF_cap_skin | 0.014668 | yes |
| Casing | DIF_cap_tissue | 0.004548 | yes |
| DIF_gill_tissue | YFB_stipe_center | 0.363455 | no |
| DIF_gill_tissue | YFB_stipe_shell | 0.777811 | no |
| DIF_gill_tissue | YFB_stipe_skin | 0.965601 | no |
| DIF_gill_tissue | YFB_cap_skin | 0.944165 | no |
| DIF_gill_tissue | YFB_cap_tissue | 0.892349 | no |
| DIF_gill_tissue | YFB_gill_tissue | 0.837042 | no |
| DIF_gill_tissue | YFB_veil | 0.967645 | no |
| YFB_stipe_center | YFB_stipe_shell | 0.676781 | no |
| YFB_stipe_center | YFB_stipe_skin | 0.319049 | no |
| YFB_stipe_center | YFB_cap_skin | 0.447487 | no |
| YFB_stipe_center | YFB_cap_tissue | 0.235278 | no |
| YFB_stipe_center | YFB_gill_tissue | 0.583920 | no |
| YFB_stipe_center | YFB_veil | 0.407303 | no |
| YFB_stipe_shell | YFB_stipe_skin | 0.725446 | no |
| YFB_stipe_shell | YFB_cap_skin | 0.853996 | no |
| YFB_stipe_shell | YFB_cap_tissue | 0.614639 | no |
| YFB_stipe_shell | YFB_gill_tissue | 0.957106 | no |
| YFB_stipe_shell | YFB_veil | 0.821168 | no |
| YFB_stipe_skin | YFB_cap_skin | 0.906826 | no |
| YFB_stipe_skin | YFB_cap_tissue | 0.932902 | no |
| YFB_stipe_skin | YFB_gill_tissue | 0.785448 | no |
| YFB_stipe_skin | YFB_veil | 0.933372 | no |
| YFB_cap_skin | YFB_cap_tissue | 0.814805 | no |
| YFB_cap_skin | YFB_gill_tissue | 0.907846 | no |
| YFB_cap_skin | YFB_veil | 0.976350 | no |
| YFB_cap_tissue | YFB_gill_tissue | 0.674636 | no |
| YFB_cap_tissue | YFB_veil | 0.848355 | no |
| YFB_gill_tissue | YFB_veil | 0.878078 | no |
| Initials | DIF_gill_tissue | 0.553272 | no |
| Initials | YFB_stipe_center | 0.874634 | no |
| Initials | YFB_stipe_shell | 0.851128 | no |
| Initials | YFB_stipe_skin | 0.499546 | no |
| Initials | YFB_cap_skin | 0.645826 | no |
| Initials | YFB_cap_tissue | 0.389457 | no |
| Initials | YFB_gill_tissue | 0.781586 | no |
| Initials | YFB_veil | 0.604968 | no |
| Initials | Pileal_Stipeal_center | 0.732490 | no |
| Initials | Pileal_Stipeal_shell | 0.579097 | no |
| Initials | DIF_stipe_center | 0.883873 | no |
| Initials | DIF_stipe_shell | 0.654284 | no |
| Initials | DIF_stipe_skin | 0.564856 | no |
| Initials | DIF_cap_skin | 0.358317 | no |
| Initials | DIF_cap_tissue | 0.519646 | no |
| Pileal_Stipeal_center | DIF_gill_tissue | 0.876871 | no |
| Pileal_Stipeal_center | YFB_stipe_center | 0.533464 | no |
| Pileal_Stipeal_center | YFB_stipe_shell | 0.925513 | no |
| Pileal_Stipeal_center | YFB_stipe_skin | 0.831541 | no |
| Pileal_Stipeal_center | YFB_cap_skin | 0.945206 | no |
| Pileal_Stipeal_center | YFB_cap_tissue | 0.726289 | no |
| Pileal_Stipeal_center | YFB_gill_tissue | 0.969973 | no |
| Pileal_Stipeal_center | YFB_veil | 0.919104 | no |
| Pileal_Stipeal_center | Pileal_Stipeal_shell | 0.895824 | no |
| Pileal_Stipeal_center | DIF_stipe_center | 0.550251 | no |
| Pileal_Stipeal_center | DIF_stipe_shell | 0.951788 | no |
| Pileal_Stipeal_center | DIF_stipe_skin | 0.885026 | no |
| Pileal_Stipeal_center | DIF_cap_skin | 0.680223 | no |
| Pileal_Stipeal_center | DIF_cap_tissue | 0.847555 | no |
| Pileal_Stipeal_shell | DIF_gill_tissue | 0.983523 | no |
| Pileal_Stipeal_shell | YFB_stipe_center | 0.382982 | no |
| Pileal_Stipeal_shell | YFB_stipe_shell | 0.794489 | no |
| Pileal_Stipeal_shell | YFB_stipe_skin | 0.948846 | no |
| Pileal_Stipeal_shell | YFB_cap_skin | 0.958744 | no |
| Pileal_Stipeal_shell | YFB_cap_tissue | 0.868518 | no |
| Pileal_Stipeal_shell | YFB_gill_tissue | 0.854494 | no |
| Pileal_Stipeal_shell | YFB_veil | 0.982888 | no |
| Pileal_Stipeal_shell | DIF_stipe_center | 0.396897 | no |
| Pileal_Stipeal_shell | DIF_stipe_shell | 0.951182 | no |
| Pileal_Stipeal_shell | DIF_stipe_skin | 0.990332 | no |
| Pileal_Stipeal_shell | DIF_cap_skin | 0.832250 | no |
| Pileal_Stipeal_shell | DIF_cap_tissue | 0.962620 | no |
| DIF_stipe_center | DIF_gill_tissue | 0.365801 | no |
| DIF_stipe_center | YFB_stipe_center | 0.991294 | no |
| DIF_stipe_center | YFB_stipe_shell | 0.686379 | no |
| DIF_stipe_center | YFB_stipe_skin | 0.322151 | no |
| DIF_stipe_center | YFB_cap_skin | 0.456864 | no |
| DIF_stipe_center | YFB_cap_tissue | 0.236682 | no |
| DIF_stipe_center | YFB_gill_tissue | 0.596449 | no |
| DIF_stipe_center | YFB_veil | 0.413186 | no |
| DIF_stipe_center | DIF_stipe_shell | 0.462688 | no |
| DIF_stipe_center | DIF_stipe_skin | 0.375368 | no |
| DIF_stipe_center | DIF_cap_skin | 0.206339 | no |
| DIF_stipe_center | DIF_cap_tissue | 0.337866 | no |
| DIF_stipe_shell | DIF_gill_tissue | 0.933861 | no |
| DIF_stipe_shell | YFB_stipe_center | 0.454137 | no |
| DIF_stipe_shell | YFB_stipe_shell | 0.862025 | no |
| DIF_stipe_shell | YFB_stipe_skin | 0.893715 | no |
| DIF_stipe_shell | YFB_cap_skin | 0.992322 | no |
| DIF_stipe_shell | YFB_cap_tissue | 0.800113 | no |
| DIF_stipe_shell | YFB_gill_tissue | 0.916413 | no |
| DIF_stipe_shell | YFB_veil | 0.969096 | no |
| DIF_stipe_shell | DIF_stipe_skin | 0.941300 | no |
| DIF_stipe_shell | DIF_cap_skin | 0.762306 | no |
| DIF_stipe_shell | DIF_cap_tissue | 0.909379 | no |
| DIF_stipe_skin | DIF_gill_tissue | 0.992245 | no |
| DIF_stipe_skin | YFB_stipe_center | 0.369699 | no |
| DIF_stipe_skin | YFB_stipe_shell | 0.785863 | no |
| DIF_stipe_skin | YFB_stipe_skin | 0.959159 | no |
| DIF_stipe_skin | YFB_cap_skin | 0.949998 | no |
| DIF_stipe_skin | YFB_cap_tissue | 0.883687 | no |
| DIF_stipe_skin | YFB_gill_tissue | 0.844925 | no |
| DIF_stipe_skin | YFB_veil | 0.974267 | no |
| DIF_stipe_skin | DIF_cap_skin | 0.850158 | no |
| DIF_stipe_skin | DIF_cap_tissue | 0.972633 | no |
| DIF_cap_skin | DIF_gill_tissue | 0.858347 | no |
| DIF_cap_skin | YFB_stipe_center | 0.200323 | no |
| DIF_cap_skin | YFB_stipe_shell | 0.573210 | no |
| DIF_cap_skin | YFB_stipe_skin | 0.900393 | no |
| DIF_cap_skin | YFB_cap_skin | 0.778398 | no |
| DIF_cap_skin | YFB_cap_tissue | 0.973184 | no |
| DIF_cap_skin | YFB_gill_tissue | 0.636616 | no |
| DIF_cap_skin | YFB_veil | 0.813681 | no |
| DIF_cap_skin | DIF_cap_tissue | 0.882336 | no |
| DIF_cap_tissue | DIF_gill_tissue | 0.979951 | no |
| DIF_cap_tissue | YFB_stipe_center | 0.330826 | no |
| DIF_cap_tissue | YFB_stipe_shell | 0.739518 | no |
| DIF_cap_tissue | YFB_stipe_skin | 0.987173 | no |
| DIF_cap_tissue | YFB_cap_skin | 0.920446 | no |
| DIF_cap_tissue | YFB_cap_tissue | 0.916321 | no |
| DIF_cap_tissue | YFB_gill_tissue | 0.802367 | no |
| DIF_cap_tissue | YFB_veil | 0.946622 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >AgabiH97|019330 MFLPTTAAFLFFAASTGVQAATVIPSNSFSSVSTFQTYWNYLYPWGSDHNGSARMRGSSSDHSHINPASGTLSLI ATPTSNPSPPTSGSDPHPAIHYASGAVHAKSQITVTRSTGYTISGEFSAPTARGTWPAFWLTAVNSWPPEVDIGE WKGTNQNWFNTFNTSSSVKSNLVNWPGDLSFHSLKAVLSAESNGADVKIDFYMDNTLRTTQFGKGFVGKPLWLII NLQMEGSAGSPGPSGTTTYKIRNVQVTNTA* |
| Coding | >AgabiH97|019330 ATGTTCTTACCGACTACTGCTGCGTTCCTTTTCTTCGCTGCTTCTACAGGAGTTCAGGCTGCGACGGTCATACCG TCCAACTCTTTCTCCTCGGTCTCAACCTTCCAGACCTATTGGAACTATCTCTATCCATGGGGTTCAGACCACAAT GGCAGTGCAAGGATGAGGGGGAGCTCATCTGACCATAGTCATATCAACCCAGCGTCGGGAACTCTTAGTTTGATA GCTACACCAACATCAAACCCCTCGCCCCCAACGAGTGGTTCTGACCCTCACCCGGCAATACACTACGCTAGTGGC GCAGTCCATGCAAAAAGTCAGATCACGGTGACCAGATCAACCGGATATACTATCTCCGGTGAATTTAGTGCCCCA ACAGCCAGAGGCACCTGGCCCGCATTCTGGTTAACTGCTGTAAATAGCTGGCCTCCTGAAGTCGATATCGGTGAA TGGAAAGGCACAAATCAAAACTGGTTCAACACCTTCAATACCTCTTCTAGCGTCAAATCCAACTTAGTCAACTGG CCCGGTGACCTCTCCTTCCATTCACTCAAAGCAGTGCTCTCAGCAGAGTCAAATGGAGCCGATGTCAAGATTGAC TTTTACATGGACAACACCCTTCGCACGACTCAATTTGGTAAAGGATTCGTCGGAAAACCCCTCTGGTTGATTATT AACTTGCAGATGGAGGGATCCGCGGGCTCTCCCGGCCCGTCGGGTACGACGACGTACAAAATTCGCAACGTGCAA GTCACTAACACTGCATGA |
| Transcript | >AgabiH97|019330 ATGTTCTTACCGACTACTGCTGCGTTCCTTTTCTTCGCTGCTTCTACAGGAGTTCAGGCTGCGACGGTCATACCG TCCAACTCTTTCTCCTCGGTCTCAACCTTCCAGACCTATTGGAACTATCTCTATCCATGGGGTTCAGACCACAAT GGCAGTGCAAGGATGAGGGGGAGCTCATCTGACCATAGTCATATCAACCCAGCGTCGGGAACTCTTAGTTTGATA GCTACACCAACATCAAACCCCTCGCCCCCAACGAGTGGTTCTGACCCTCACCCGGCAATACACTACGCTAGTGGC GCAGTCCATGCAAAAAGTCAGATCACGGTGACCAGATCAACCGGATATACTATCTCCGGTGAATTTAGTGCCCCA ACAGCCAGAGGCACCTGGCCCGCATTCTGGTTAACTGCTGTAAATAGCTGGCCTCCTGAAGTCGATATCGGTGAA TGGAAAGGCACAAATCAAAACTGGTTCAACACCTTCAATACCTCTTCTAGCGTCAAATCCAACTTAGTCAACTGG CCCGGTGACCTCTCCTTCCATTCACTCAAAGCAGTGCTCTCAGCAGAGTCAAATGGAGCCGATGTCAAGATTGAC TTTTACATGGACAACACCCTTCGCACGACTCAATTTGGTAAAGGATTCGTCGGAAAACCCCTCTGGTTGATTATT AACTTGCAGATGGAGGGATCCGCGGGCTCTCCCGGCCCGTCGGGTACGACGACGTACAAAATTCGCAACGTGCAA GTCACTAACACTGCATGA |
| Gene | >AgabiH97|019330 ATGTTCTTACCGACTACTGCTGCGTTCCTTTTCTTCGCTGCTTCTACAGGAGTTCAGGCTGCGACGGTCATACCG TCCAACTCTTTCTCCTCGGTCTCAACCTTCCAGACCTATTGGAACTATCTCTATCCATGGGGTTCAGACCACAAT GGCAGTACGTCTGTTATTGCTTTGCCATTATACATCATTCATCTGTATCATAAGGTGCAAGGATGAGGGGGAGCT CATCTGACCATAGTCATATCAACCCAGCGTCGGGAACTCTTAGTTTGATAGCTACACCAACATCAAACCCCTCGC CCCCAACGAGTGGTTCTGACCCTCACCCGGCAATACACTACGCTAGGTAATATCAGAGAGAGAAATAATATCGTC GACCGAATTTAACGCTGACGATCACCCTTAGTGGCGCAGTCCATGCAAAAAGTCAGATCACGGTGACCAGATCAA CCGGATATACTATCTCCGGTGAATTTAGTGCCCCAACAGCCAGAGGCACCTGGCCCGCATTCTGGTGAATAAACA CGCAAGACTTGCTTTTTTGACATCATGCTCACATGGCTATGTCCCGAATTGCAGGTTAACTGTAAGTTCGACTGT CATTTCTGATATATCCTTTCCGCGTCTTACAAGTTACGATGTTTCACTAGGCTGTAAATAGCTGGCCTCCTGAAG TCGATATCGGTGAATGGAAAGGCACAAATCAAAACTGGTTCAACACCTTCAATACCTCTTCTAGCGTCAAATCCA ACTTAGTCAACTGGCCCGGTGACCTCTCCTTCCATTCACTCAAAGCAGTGCTCTCAGCAGAGTCAAATGGAGCCG ATGTCAAGATTGACTTTTACATGGACAACACCCTTCGCACGACTCAATTTGGTAAAGGATTCGTCGGAAAACCCC TCTGGTTGTATGTGATCTTTCGCTACTTTTTATTGTAAAATGGTGGGCTGATGTTCTTAATGATAGGATTATTAA CTTGCAGGTATGCACGGCCTATTCCATATATTCGCGCCAGCAGATTGAATGTTGCATTAGATGGAGGGATCCGCG GGCTCTCCCGGCCCGTCGGGTACGACGACGTACAAAATTCGCAACGTGCAAGTCACTAACACTGCATGA |