Fungal Genomics

at Utrecht University

General Properties

Protein ID	AgabiH97\|018120
Gene name
Location	scaffold_10:856954..857716
Strand	-
Gene length (bp)	762
Transcript length (bp)	762
Coding sequence length (bp)	762
Protein length (aa)	254

PFAM Domains

PFAM Domain ID	Short name	Long name	E-value	Start	End
PF14223	Retrotran_gag_2	gag-polypeptide of LTR copia-type	3.3E-13	44	186

Swissprot hits

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]

SignalP signal predicted	Location (based on Ymax)	D score (significance: > 0.45)
No	1 - 25	0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Click here for more information

Sequences

Type of sequence	Sequence
Locus	Download genbank file of locus The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein	>AgabiH97\|018120 MVWRDGGMAESLWALETCLWQAEGSLNLCPVTQAEADALDAFEARLDKAAGWLYLMVEQEQRIHFQGIQDSPVKM WEALEAVHRQKRAGMRFNAYDDLFSIRKLEEESLQSLINRVESSKRKIKELRPSSFTLEQLDDELASMALIRALP DEFSGFTSSLLLMDKLDKTTVHQAFVTEDLQHRKRAQDASGTSQALAARSGSQFATKTCNFCGREGHKFSECKTF ERAKSRAQEDAQKPRTPYKRANMLNVER*
Coding	>AgabiH97\|018120 ATGGTCTGGAGAGATGGAGGCATGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCTGGCAGGCAGAAGGCTCC CTTAACCTCTGCCCTGTTACCCAGGCTGAAGCAGACGCTTTGGACGCGTTTGAGGCTCGCTTGGACAAGGCTGCA GGCTGGCTCTATCTCATGGTGGAGCAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATG TGGGAGGCTCTAGAGGCTGTACATCGACAGAAAAGGGCTGGAATGCGATTCAATGCCTATGATGACCTCTTTTCC ATCCGAAAACTCGAGGAGGAGTCCCTCCAATCCCTTATCAATAGAGTAGAGAGCTCTAAACGAAAAATCAAGGAA CTCCGCCCCTCCTCCTTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCG GACGAGTTTTCCGGCTTCACGTCGTCTCTATTGCTTATGGACAAGCTGGACAAGACTACAGTCCACCAGGCCTTT GTCACAGAGGACTTACAACATCGAAAACGCGCTCAGGACGCCTCTGGGACCTCCCAGGCTCTTGCAGCTCGCTCT GGCTCCCAATTTGCGACGAAAACCTGCAATTTCTGCGGGAGAGAGGGCCACAAGTTCTCTGAATGCAAAACCTTC GAGAGAGCGAAGTCCCGGGCTCAGGAGGACGCACAAAAGCCTAGAACTCCGTACAAGAGGGCTAACATGTTAAAC GTAGAACGATAG
Transcript	>AgabiH97\|018120 ATGGTCTGGAGAGATGGAGGCATGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCTGGCAGGCAGAAGGCTCC CTTAACCTCTGCCCTGTTACCCAGGCTGAAGCAGACGCTTTGGACGCGTTTGAGGCTCGCTTGGACAAGGCTGCA GGCTGGCTCTATCTCATGGTGGAGCAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATG TGGGAGGCTCTAGAGGCTGTACATCGACAGAAAAGGGCTGGAATGCGATTCAATGCCTATGATGACCTCTTTTCC ATCCGAAAACTCGAGGAGGAGTCCCTCCAATCCCTTATCAATAGAGTAGAGAGCTCTAAACGAAAAATCAAGGAA CTCCGCCCCTCCTCCTTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCG GACGAGTTTTCCGGCTTCACGTCGTCTCTATTGCTTATGGACAAGCTGGACAAGACTACAGTCCACCAGGCCTTT GTCACAGAGGACTTACAACATCGAAAACGCGCTCAGGACGCCTCTGGGACCTCCCAGGCTCTTGCAGCTCGCTCT GGCTCCCAATTTGCGACGAAAACCTGCAATTTCTGCGGGAGAGAGGGCCACAAGTTCTCTGAATGCAAAACCTTC GAGAGAGCGAAGTCCCGGGCTCAGGAGGACGCACAAAAGCCTAGAACTCCGTACAAGAGGGCTAACATGTTAAAC GTAGAACGATAG
Gene	>AgabiH97\|018120 ATGGTCTGGAGAGATGGAGGCATGGCTGAGAGCCTCTGGGCTCTGGAGACTTGTCTCTGGCAGGCAGAAGGCTCC CTTAACCTCTGCCCTGTTACCCAGGCTGAAGCAGACGCTTTGGACGCGTTTGAGGCTCGCTTGGACAAGGCTGCA GGCTGGCTCTATCTCATGGTGGAGCAGGAGCAGAGAATTCACTTCCAGGGCATCCAGGACAGTCCTGTGAAGATG TGGGAGGCTCTAGAGGCTGTACATCGACAGAAAAGGGCTGGAATGCGATTCAATGCCTATGATGACCTCTTTTCC ATCCGAAAACTCGAGGAGGAGTCCCTCCAATCCCTTATCAATAGAGTAGAGAGCTCTAAACGAAAAATCAAGGAA CTCCGCCCCTCCTCCTTCACTCTAGAGCAGCTAGATGATGAGCTAGCCTCTATGGCTCTCATCAGAGCGCTCCCG GACGAGTTTTCCGGCTTCACGTCGTCTCTATTGCTTATGGACAAGCTGGACAAGACTACAGTCCACCAGGCCTTT GTCACAGAGGACTTACAACATCGAAAACGCGCTCAGGACGCCTCTGGGACCTCCCAGGCTCTTGCAGCTCGCTCT GGCTCCCAATTTGCGACGAAAACCTGCAATTTCTGCGGGAGAGAGGGCCACAAGTTCTCTGAATGCAAAACCTTC GAGAGAGCGAAGTCCCGGGCTCAGGAGGACGCACAAAAGCCTAGAACTCCGTACAAGAGGGCTAACATGTTAAAC GTAGAACGATAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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