Fungal Genomics

at Utrecht University

General Properties

Protein IDAgabiH97|017710
Gene name
Locationscaffold_10:746167..746612
Strand+
Gene length (bp)445
Transcript length (bp)336
Coding sequence length (bp)336
Protein length (aa) 112

Overview

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF01679 Pmp3 Proteolipid membrane potential modulator 2.3E-23 6 54

Swissprot hits

[Show all]
Swissprot ID Swissprot Description Start End E-value
sp|P34655|YOT0_CAEEL UPF0057 membrane protein ZK632.10 OS=Caenorhabditis elegans GN=ZK632.10 PE=3 SV=2 7 56 2.0E-11
sp|Q4HXT6|PMP3_GIBZE Plasma membrane proteolipid 3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PMP3 PE=3 SV=2 3 55 2.0E-11
sp|Q4WYA5|PMP3_ASPFU Plasma membrane proteolipid 3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pmp3 PE=3 SV=1 3 55 7.0E-11
sp|Q871V2|PMP3_NEUCR Plasma membrane proteolipid 3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pmp-1 PE=3 SV=1 3 55 1.0E-10
sp|Q9C1W4|PMP3_SCHPO Plasma membrane proteolipid 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmp3 PE=3 SV=2 2 55 7.0E-10
[Show all]
[Show less]
Swissprot ID Swissprot Description Start End E-value
sp|P34655|YOT0_CAEEL UPF0057 membrane protein ZK632.10 OS=Caenorhabditis elegans GN=ZK632.10 PE=3 SV=2 7 56 2.0E-11
sp|Q4HXT6|PMP3_GIBZE Plasma membrane proteolipid 3 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PMP3 PE=3 SV=2 3 55 2.0E-11
sp|Q4WYA5|PMP3_ASPFU Plasma membrane proteolipid 3 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pmp3 PE=3 SV=1 3 55 7.0E-11
sp|Q871V2|PMP3_NEUCR Plasma membrane proteolipid 3 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=pmp-1 PE=3 SV=1 3 55 1.0E-10
sp|Q9C1W4|PMP3_SCHPO Plasma membrane proteolipid 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmp3 PE=3 SV=2 2 55 7.0E-10
sp|P0AE42|YQAE_ECOLI UPF0057 membrane protein YqaE OS=Escherichia coli (strain K12) GN=yqaE PE=3 SV=1 10 52 2.0E-08
sp|P0AE43|YQAE_ECOL6 UPF0057 membrane protein YqaE OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yqaE PE=3 SV=1 10 52 2.0E-08
sp|P0AE44|YQAE_ECO57 UPF0057 membrane protein YqaE OS=Escherichia coli O157:H7 GN=yqaE PE=3 SV=1 10 52 2.0E-08
sp|Q07549|SNA4_YEAST Protein SNA4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SNA4 PE=1 SV=1 5 110 3.0E-07
sp|Q9Y068|RIC1_PHYIN Protein Ric1 OS=Phytophthora infestans GN=RIC1 PE=3 SV=1 2 56 6.0E-07
sp|Q8H5T6|LTI6A_ORYSJ Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1 10 55 3.0E-06
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GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0031224 intrinsic component of membrane No
GO:0005575 cellular_component No
GO:0110165 cellular anatomical entity No

Deeploc

[Help with interpreting the results of Deeploc 2.0]
Localizations Signals Cytoplasm Nucleus Extracellular Cell membrane Mitochondrion Plastid Endoplasmic reticulum Lysosome vacuole Golgi apparatus Peroxisome
Cell membrane|Lysosome/Vacuole Transmembrane domain 0.1598 0.1186 0.1057 0.7827 0.2745 0.055 0.6056 0.6351 0.5086 0.0033

SignalP

(None)

Transmembrane Domains

Domain # Start End Length
1 7 26 19
2 31 53 22

Transcription Factor Class

(None)

CAZymes

(None)

Secondary Metabolism

(None)

Expression data

Analysis 1: Developmental stages of Agaricus bisporus (strain A15). Published in Pelkmans et al, Applied Microbiology and Biotechnology, 2016

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
Casing Casing mycelium 307.81 173.04 442.57
Initials Initials knots 247.30 137.34 357.27
Pileal_Stipeal_center Stage I stipe center 276.73 155.61 397.86
Pileal_Stipeal_shell Stage I stipe shell 307.21 175.58 438.83
DIF_stipe_center Stage II stipe center 284.50 160.88 408.11
DIF_stipe_shell Stage II stipe shell 296.04 166.55 425.52
DIF_stipe_skin Stage II stipe skin 329.29 188.80 469.78
DIF_cap_skin Stage II cap skin 369.30 214.14 524.45
DIF_cap_tissue Stage II cap tissue 315.62 179.40 451.84
DIF_gill_tissue Stage II gill tissue 286.92 161.97 411.86
YFB_stipe_center Young fruiting body stipe center 339.28 195.27 483.29
YFB_stipe_shell Young fruiting body stipe shell 330.03 189.80 470.26
YFB_stipe_skin Young fruiting body stipe skin 297.86 168.60 427.12
YFB_cap_skin Young fruiting body cap skin 553.28 330.24 776.33
YFB_cap_tissue Young fruiting body cap tissue 384.79 224.06 545.52
YFB_gill_tissue Young fruiting body gill tissue 492.64 286.97 698.32
YFB_veil Young fruiting body veil 403.00 235.15 570.84

Differential expression

Label1 Label2 Q-value Significant difference
Casing DIF_gill_tissue 0.900630 no
Casing YFB_stipe_center 0.851128 no
Casing YFB_stipe_shell 0.899464 no
Casing YFB_stipe_skin 0.956799 no
Casing YFB_cap_skin 0.040279 yes
Casing YFB_cap_tissue 0.565694 no
Casing YFB_gill_tissue 0.110863 no
Casing YFB_veil 0.448926 no
Casing Initials 0.591550 no
Casing Pileal_Stipeal_center 0.834420 no
Casing Pileal_Stipeal_shell 0.997161 no
Casing DIF_stipe_center 0.884509 no
Casing DIF_stipe_shell 0.947914 no
Casing DIF_stipe_skin 0.901469 no
Casing DIF_cap_skin 0.660639 no
Casing DIF_cap_tissue 0.965534 no
DIF_gill_tissue YFB_stipe_center 0.702021 no
DIF_gill_tissue YFB_stipe_shell 0.762992 no
DIF_gill_tissue YFB_stipe_skin 0.950785 no
DIF_gill_tissue YFB_cap_skin 0.018344 yes
DIF_gill_tissue YFB_cap_tissue 0.407219 no
DIF_gill_tissue YFB_gill_tissue 0.057747 no
DIF_gill_tissue YFB_veil 0.299835 no
YFB_stipe_center YFB_stipe_shell 0.962818 no
YFB_stipe_center YFB_stipe_skin 0.782403 no
YFB_stipe_center YFB_cap_skin 0.092503 no
YFB_stipe_center YFB_cap_tissue 0.785795 no
YFB_stipe_center YFB_gill_tissue 0.235379 no
YFB_stipe_center YFB_veil 0.677866 no
YFB_stipe_shell YFB_stipe_skin 0.841593 no
YFB_stipe_shell YFB_cap_skin 0.071968 no
YFB_stipe_shell YFB_cap_tissue 0.729675 no
YFB_stipe_shell YFB_gill_tissue 0.192529 no
YFB_stipe_shell YFB_veil 0.617645 no
YFB_stipe_skin YFB_cap_skin 0.027698 yes
YFB_stipe_skin YFB_cap_tissue 0.493659 no
YFB_stipe_skin YFB_gill_tissue 0.087080 no
YFB_stipe_skin YFB_veil 0.381405 no
YFB_cap_skin YFB_cap_tissue 0.247911 no
YFB_cap_skin YFB_gill_tissue 0.803698 no
YFB_cap_skin YFB_veil 0.326586 no
YFB_cap_tissue YFB_gill_tissue 0.492381 no
YFB_cap_tissue YFB_veil 0.932928 no
YFB_gill_tissue YFB_veil 0.603614 no
Initials DIF_gill_tissue 0.756693 no
Initials YFB_stipe_center 0.371399 no
Initials YFB_stipe_shell 0.432045 no
Initials YFB_stipe_skin 0.671216 no
Initials YFB_cap_skin 0.002084 yes
Initials YFB_cap_tissue 0.158909 no
Initials YFB_gill_tissue 0.012880 yes
Initials YFB_veil 0.105864 no
Initials Pileal_Stipeal_center 0.826192 no
Initials Pileal_Stipeal_shell 0.593967 no
Initials DIF_stipe_center 0.773287 no
Initials DIF_stipe_shell 0.686610 no
Initials DIF_stipe_skin 0.439011 no
Initials DIF_cap_skin 0.214014 no
Initials DIF_cap_tissue 0.529589 no
Pileal_Stipeal_center DIF_gill_tissue 0.952033 no
Pileal_Stipeal_center YFB_stipe_center 0.615400 no
Pileal_Stipeal_center YFB_stipe_shell 0.680588 no
Pileal_Stipeal_center YFB_stipe_skin 0.893319 no
Pileal_Stipeal_center YFB_cap_skin 0.009446 yes
Pileal_Stipeal_center YFB_cap_tissue 0.328438 no
Pileal_Stipeal_center YFB_gill_tissue 0.042692 yes
Pileal_Stipeal_center YFB_veil 0.237666 no
Pileal_Stipeal_center Pileal_Stipeal_shell 0.833581 no
Pileal_Stipeal_center DIF_stipe_center 0.964697 no
Pileal_Stipeal_center DIF_stipe_shell 0.904776 no
Pileal_Stipeal_center DIF_stipe_skin 0.683267 no
Pileal_Stipeal_center DIF_cap_skin 0.413420 no
Pileal_Stipeal_center DIF_cap_tissue 0.776020 no
Pileal_Stipeal_shell DIF_gill_tissue 0.899541 no
Pileal_Stipeal_shell YFB_stipe_center 0.841511 no
Pileal_Stipeal_shell YFB_stipe_shell 0.892390 no
Pileal_Stipeal_shell YFB_stipe_skin 0.957054 no
Pileal_Stipeal_shell YFB_cap_skin 0.036911 yes
Pileal_Stipeal_shell YFB_cap_tissue 0.553034 no
Pileal_Stipeal_shell YFB_gill_tissue 0.107767 no
Pileal_Stipeal_shell YFB_veil 0.437934 no
Pileal_Stipeal_shell DIF_stipe_center 0.883138 no
Pileal_Stipeal_shell DIF_stipe_shell 0.948135 no
Pileal_Stipeal_shell DIF_stipe_skin 0.894043 no
Pileal_Stipeal_shell DIF_cap_skin 0.647397 no
Pileal_Stipeal_shell DIF_cap_tissue 0.960039 no
DIF_stipe_center DIF_gill_tissue 0.988371 no
DIF_stipe_center YFB_stipe_center 0.679724 no
DIF_stipe_center YFB_stipe_shell 0.742678 no
DIF_stipe_center YFB_stipe_skin 0.935998 no
DIF_stipe_center YFB_cap_skin 0.015819 yes
DIF_stipe_center YFB_cap_tissue 0.390721 no
DIF_stipe_center YFB_gill_tissue 0.055979 no
DIF_stipe_center YFB_veil 0.291052 no
DIF_stipe_center DIF_stipe_shell 0.946226 no
DIF_stipe_center DIF_stipe_skin 0.746194 no
DIF_stipe_center DIF_cap_skin 0.474750 no
DIF_stipe_center DIF_cap_tissue 0.833512 no
DIF_stipe_shell DIF_gill_tissue 0.958565 no
DIF_stipe_shell YFB_stipe_center 0.771842 no
DIF_stipe_shell YFB_stipe_shell 0.827452 no
DIF_stipe_shell YFB_stipe_skin 0.991294 no
DIF_stipe_shell YFB_cap_skin 0.027451 yes
DIF_stipe_shell YFB_cap_tissue 0.480071 no
DIF_stipe_shell YFB_gill_tissue 0.082277 no
DIF_stipe_shell YFB_veil 0.371897 no
DIF_stipe_shell DIF_stipe_skin 0.831614 no
DIF_stipe_shell DIF_cap_skin 0.574567 no
DIF_stipe_shell DIF_cap_tissue 0.908349 no
DIF_stipe_skin DIF_gill_tissue 0.767520 no
DIF_stipe_skin YFB_stipe_center 0.961312 no
DIF_stipe_skin YFB_stipe_shell 0.996701 no
DIF_stipe_skin YFB_stipe_skin 0.841417 no
DIF_stipe_skin YFB_cap_skin 0.069578 no
DIF_stipe_skin YFB_cap_tissue 0.718454 no
DIF_stipe_skin YFB_gill_tissue 0.190137 no
DIF_stipe_skin YFB_veil 0.607058 no
DIF_stipe_skin DIF_cap_skin 0.808164 no
DIF_stipe_skin DIF_cap_tissue 0.940693 no
DIF_cap_skin DIF_gill_tissue 0.491153 no
DIF_cap_skin YFB_stipe_center 0.867833 no
DIF_cap_skin YFB_stipe_shell 0.812167 no
DIF_cap_skin YFB_stipe_skin 0.583245 no
DIF_cap_skin YFB_cap_skin 0.179208 no
DIF_cap_skin YFB_cap_tissue 0.939795 no
DIF_cap_skin YFB_gill_tissue 0.396350 no
DIF_cap_skin YFB_veil 0.859949 no
DIF_cap_skin DIF_cap_tissue 0.711051 no
DIF_cap_tissue DIF_gill_tissue 0.849847 no
DIF_cap_tissue YFB_stipe_center 0.891375 no
DIF_cap_tissue YFB_stipe_shell 0.936154 no
DIF_cap_tissue YFB_stipe_skin 0.914994 no
DIF_cap_tissue YFB_cap_skin 0.043983 yes
DIF_cap_tissue YFB_cap_tissue 0.614536 no
DIF_cap_tissue YFB_gill_tissue 0.127349 no
DIF_cap_tissue YFB_veil 0.495365 no

Orthologs

Orthofinder run ID1
Orthogroup1866
Change Orthofinder run
Species Protein ID
Agaricus bisporus var bisporus H39 AgabiH39|017710
Agaricus bisporus var bisporus H97 AgabiH97|017710 (this protein)

Sequences

Type of sequenceSequence
Locus Download genbank file of locus Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >AgabiH97|017710
MVKASDVVLILVAIIFPPAAALIITGCSCDFLINVLLTCLGYLPGHIHAFWLIYKKMQAEERFGHDGYRYIGSGH
YEPLYNNAAPPIPYPQQQQQPMPQQAPQYYGSTDNH*
Coding >AgabiH97|017710
ATGGTCAAAGCCTCCGACGTCGTCCTCATCCTCGTCGCCATCATCTTCCCCCCCGCCGCCGCGCTCATCATCACC
GGCTGCAGCTGCGACTTTCTCATCAACGTCCTCCTCACCTGTTTGGGTTATTTGCCCGGTCATATACATGCATTT
TGGTTGATTTACAAGAAAATGCAGGCTGAGGAGAGGTTCGGCCACGATGGATACCGATACATTGGTTCTGGACAT
TACGAGCCTCTCTACAATAATGCGGCACCGCCTATTCCATATCCGCAGCAGCAGCAGCAGCCCATGCCTCAACAG
GCTCCACAATACTATGGGTCCACTGACAACCACTAA
Transcript >AgabiH97|017710
ATGGTCAAAGCCTCCGACGTCGTCCTCATCCTCGTCGCCATCATCTTCCCCCCCGCCGCCGCGCTCATCATCACC
GGCTGCAGCTGCGACTTTCTCATCAACGTCCTCCTCACCTGTTTGGGTTATTTGCCCGGTCATATACATGCATTT
TGGTTGATTTACAAGAAAATGCAGGCTGAGGAGAGGTTCGGCCACGATGGATACCGATACATTGGTTCTGGACAT
TACGAGCCTCTCTACAATAATGCGGCACCGCCTATTCCATATCCGCAGCAGCAGCAGCAGCCCATGCCTCAACAG
GCTCCACAATACTATGGGTCCACTGACAACCACTAA
Gene >AgabiH97|017710
ATGGTCAAAGCCTCCGACGTCGTCCTCATCCTCGTCGCCATCATCTTCCCCCCCGCCGCCGCGCTCATCATCACC
GGCTGCAGCTGCGACTTTCTCATCAACGTCCTCCTCACCTGGTACGTCAGCCAACCCCGCATTCTGTTCGCTTAT
CTGATTCACTGCTTTCCATCACCAGTTTGGGTTATTTGCCCGGTCATATACATGCATTTTGGTTGATTTACAAGA
AAATGCAGGCTGAGGAGAGGTTCGGCCACGATGGATACCGATGTGCGTCCTCACCCTCTCGTCTGTATATATAGC
AGCTAATTTGTTTACAGACATTGGTTCTGGACATTACGAGCCTCTCTACAATAATGCGGCACCGCCTATTCCATA
TCCGCAGCAGCAGCAGCAGCCCATGCCTCAACAGGCTCCACAATACTATGGGTCCACTGACAACCACTAA

© 2023 - Robin Ohm - Utrecht University - The Netherlands

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